RNA id: XM_026915887.2


Basic Information

Item Value
RNA id XM_026915887.2
length 5745
RNA type mRNA
GC content 0.47
exon number 31
gene id abcc3
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8693259 ~ 8746106 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGAGCTCCGGAGGGTTTCTGGTGCTCCGCGATAGCGGGGAGGCCAAGACTTACCCCTGTGCTGTCCGTCTCTCAGTCGAGTTACACCCTTCTGgtcagtcgtgtgtgtgtgtgagtgtgtgtgagatatatgTTTGGCAGAAGAAGCTGAGCAGACCTGAAGCTGCGTACTTTCTGCCTGAGGAAGAGTGGGCTTGAGGAGCAGCGGCCAGATGGAGGTTTTGTGCGGATCTCAACTTCCCTTCTGGGACCTGAATCTGACCCTATACCATAACAACCCTGATCTCACAGAGTGCTTTCAGCTTTCTGTGCTTCCATGGATCCCCTGCATCTACCTGTGGCTGGTCTTCCCTTTTTACTTCATTTACCTCAAGTTGAACAACAGAGGCTATATTATGATGTCTatattaaacagaataaaaacgGTGTTTGGCTTGATTTTATGGATTGTGTGCTGGACAGACCTCTTTGCCTCGTTCAGTGAAATGGAGCAGGGGATTTTCAGACCTCCAATATACTTTGTTACTCCATTAGTACTTGGCATGACTATGCTATTAGCCACCTTTCTTATCCAGTTTGAGCGTCTGAAAGGGGTGCAGTCCTCTGGAgtgctttttatattttgggtGATCTCCGTACTGTGTGCCATCGTGCCTTTTCGCTCAAAGATCCTTCAGGCCCGCCAAGAGGATGATATTAAAGACAAACTGCGGTTCACAACATTCTACATGTATTTTGGCCTCGTGATGGCAGAACTCATTCTGTCCTGCTTCAGTGAGAAGCCTCCACACTTCTCCAGCGCAGTCACAGATCCTaaTCCATGTCCAGAATCATCTGCTGGCTTCCTCTCAAGAATGACCTTTTGGTGGTTTACAAGCATGGCAATAAAAGGCTACAAATCTCCACTGGAAAACAAAGACCTGTGGTCCCTGAACAAGGATGACAGCTCAGAGGTGGTGGTACCCAAACTCCTCAAGGAGTGGGAAGTGGAAAAGTCTAAAGTACATAGGTCTGCACAGGAAATGAATGGGCAGGCCGTATACTCTAAAGCTGAGTCAGAGAGCAACCACGTGGGTGTAAATCCTGAGGAGGTGGAAGTGCTACTCTCCAAGAAGAAGGAGTCACAGCAACCTTCCTTCCTACGTGCCCTAATCAGAGCCTTTGGGCCCTACTTCCTCATTGGCTCAGCCTTCAAGCTGCTACAGGATATCATCGTCTTCAtcaaccctcagctgctcagGATGCTGATTGCGTTCACCAAAAACAAGAATGTGCCATCGTGGTGGGGCTTCGCTCTGGCCTTCCTCATGTTTGGTTGTGCCCTGCTGCAGACACTCATCCTGCATCAGCACTTTCAGTACTGCTTCGTTACAGGCATGAGGCTGCGCACAGCTATCATCGGTGCCATCTACAGAAAGTCGCTGGTCATTACTAATGAAGCGAAGCGTTCTTCCACTGTGGGAGAGATCGTTAACTTGATGTCCGTGGATGCTCAGCGCTTTATGGACCTCACCACGTTCCTGAACATGCTGTGGTCTGCACCGCTGCAGATCATACTggctctcttcttcctctggcAGACTCTGGGCCCCTCTGTCCTGGCAGGTGTTGCTGTTATGGTTCTCCTAATTCCTTTTAATGCTGTGATTGCCATGAAAACCAGAGCATACCAGGTGGAGCAGATGCAGTACAAAGATGCTCGCATCAAGGTGATGAATGAAATCCTGAACGGGATGAAAGTGCTGAAGCTCTACGCCTGGGAGCTCTCCTTCAAGGAGAAGGTCCTACAAATTCGGCAAAAGGAGCTCGACGTGCTGCGCAAGTCTGGCTACCTTAGTGCCCTGTCTGTCATGGCCTGGACAAGCGCCCCCTTTCTGGTTGCTATGACAACATTTGCCGTGTATGTGACTGTGGACAAAAACAACGTCTTAGATGCAGAGAAGGCCtttgtctcactttctctgttcAACATCTTAAGATTTCCCCTGAACATGCTTCCACAGGTCATAAGCAGCGTCATGCAGGCTAGCGTGTCTCTCAAGCGTATCCAGCAATTCTTGAGTCATGATGAGCTGGACCCAGACAGCGTGGATAGAAAGCCTGCAGCTTCGGAATATGCTGTAACTGTTGTGAACGGGAAATTCTCATGGGCCAAGAAAGATCCGCCTGCTCTTCAAAACATTAATGTGATGGTGCCCCAGGGCTCAGTGTTAGCAGTGGTGGGTCATGTAGGATGTGGGAAAACATCTCTTGTGTCAGCTCTGCTAGGAGAGATGGAGAAGCTAGATGGGGAGATGTCCATAAGGGGTTCCGTGGCTTATGTGCCACAGCAGGCGTGGATCCAGAATGCCACACTGAGAGACAACATCCTGTTCGGCAGACCTTACATAGAGGAGAAGTACCGCCGTGTGCTGGATGCCTGCGCCCTTACCACTGATCTCGAAGTACTTCCTGGAGGTGACCAAACAGAGATAGGAGAGAAGgGAATTAATCTTTCTGGAGGTCAGAGGCAGAGGGTGAGTTTGGCCAGGGCTCTGTACAGTGAAGCAGACGTTTACCTCCTGGATGACCCGCTGTCTGCTGTGGATGCCCATGTCGCCAAGCACATCTTTGACAATGTCATTGGGCCAGAGGGAGCACTCCGTCAAAAGACACGAATCCTGGTGACCCACGGCATCAGCTTCCTGCCCCAGGTGGATAACATCATGGTGCTAGTGGAGGGCAGGGTATCAGAGATGGGATCTTACCAGGACTTGCTCAATGAGAATGGGGCCTTCGCTGAGTTCCTGAGGAACTACTCTGTAGAGGACATAATGGAGGATGACGAAGTGACAGAGGTGCTGATTGATGAGGAAGAGTTATTCCCTGATGATGCTCTCAGTACCCACACTGATATGGTGGACCAGGAACCTGCAGTCAATGAGGCTCGAAGGCAGTTTATGAGGCAAATCAGCATCATGTCTAATGATATGGAGAACACAAGGGCGAAATCAGTACGCAAACGTCGCTTCAGCGAGAGGAGGCATGGAGAGCCACCGCAGGAGAAGAAAGAGTCCAAAGTGGAGAAGCTTATCCAGGCTGAGACTACAGAGACGGGCCGGgtGAAACTCAAGGTTTATTGGGAGTATGTGAAAGCTGTGGGGCCTTTGATGTCCATTTTCATTTGCTTCCTGTATGGCGCTCAGAGTGCAGCAGCTATCGGGGCCAACATTTGGCTCACCGTGTGGACTAATGACACCGAGAAGAGCAACAGAGAAGACGATGTACCAATGAGAGTGGGGGTGTATGCAGCACTGGGCATTACACAAGGCCTCCTGGTCATGTTATCTTCCTTTGCTCTGGTCCTGGGGAAAATCCAGGCTGCCCGCAAGCTGCACCAGGGCCTGCTGGACAACAAATTTCACACCCCACAGTCTTTCTTTGATACTACACCCATAGGGCGCATCATCAACCGCTTCTCCAAAGATATTTACGTGATCGACGAGGCCCTGCCCTCCACTATCCTCATGTTCCTGGGCACCTTTTTTACCTCCCTCTCCACCGTGATCGTTATCGTTTCCAGCACCCCTATCTTTGCTGTGGTCATTGGCCCCTTGGCTATAATTTACTTCTTTGTGCAGAGATTTTATGTAGCCACCTCACGGCAGCTAAAGAGACTGGAGTCGGTCAGTAGATCCCCTATATACTCTCATTTTTCGGAGACCATCACTGGCACTAGCGTGATCCGTGCTTATGGGCTCAGCACTTCTTTTGTGCTCATGAGTGATATGAAAGTGGATGAGAACCAAAAGAGTTACTACCCTGGTATTGTTTCCAACAGGTGGTTGGGGGTACGGATTGAGTTTATTGGAAATTGCATTGTGCTGTTTGCTGCTCTGTTTGCCGTTATCGGGAAGGACAACCTCAGCGAAGGACTTGTGGGGCTCTCTGTCACTTATGCCCTGCAGGTCACCATGTCCTTGAACTGGATGGTGAGAATGACCTCTGACCTTGAGAGCAACATTGTTGCTGTAGAGAGAGTGAAGGAGTACTCAGAGACACCACCTGAGGCACCATGGGAGGTGGAGGACAAAAAGCCTTCATCTGACTGGCCTCCTGAGGGCAATGTGGAGTTTACTGACTACAGTGTGAGGTATCGGGAGGGACTTGACTTGGTGCTGAGGAATATTTCTCTCCAGGTGAAAGGAGGAGAAAAGATTGGCATTGTGGGTAGGACTGGAGCAGGCAAGTCCTCCATGACGCTGTGTCTGTTCCGTCTGCTGGAGGCAGCAGGAGGGGAAATTACCATTGACGGAGTAAAGATTGCTGAGATCGGCCTGCATGACCTAAGAACCAAACTCACCATAATCCCCCAGGAACCAGTTCTGTTCTCAGGGACGTTGAGGATGAACCTTGACCCTTTTGACAAATACAGTGATGATGATATTTGGAACGCTCTGAAACTGTCTCATCTACATAAGTTTGTCAGCAACCAGCAAGCTAAACTCGAGTTGGAGTGCACGGAAGGAGGAGAGAATTTAAGTGTGGGACAGAGGCAACTTGTCTGTTTGGCTCGAGCTTTGCTAAGGAAGACCAGAATCCTCATCCTTGATGAAGCCACAGCTGCTATTGACTTGGAGACAGATGATCTCATCCAGTCCACCATCCGCACACAGTTCGAGGACTGCACAGTCTTCACCATCGCTCACAGACTCAACACCATCATGGACTACACAAGAGTTCTGGTTTTGGACAAGGGACAGATAGCAGAGTTTGACACACCAGCAAACCTTATTGCACAGAAAGGAATATTCCATGGCATGGCAAGAGACGCAGGGTTGGCGTGAGCCGTCAAAGCTGTACAAACACAAAGTGCCTTCATccacagtgagacagtgaaTGTATCTTTGTTTTGTTACTCAGCTGGACCTGTAATTGTTTTtgcattattgttgttttatatgAACTCAGTGCTACTGTTACTTTGGCCACTGAATTTTAATAATGAACCAGTCTATTTTTGTACTGTATTATTTAAGTTACTTTTGAGGCTTTGCCATAGGGAAAATATGCTGTTGAAATAAAGGTGCCATTCCTTTTTGTACAGTACATATTTTATTACCAACGTGGAATTATGTTACTTTTACTGTCTAAAGCAATAGTGCATTGTTTTGTTGTCATCAGGAAGTTCCAAAGTTGTTTTTTTGACCAAATTTTGTGCGTGACAATCAGATTCAGCACGACATGCAAGTCTGAGATGTCTGAAGTGTGTCCAGACTGGACCCATGCTTTAGATTGATTAGACTTCAGCACAGAAGCATTAATATTGTGGCCCtctgtattttaatgttttgagtTAAAGGGATCATATCTATTTCTTCCTTCAGCAGCTACACCTCATATGAGCCAGGCTTGCACTGTTTGCTCCAGGTCCATTTAGATTCAGATATAAAGAACAGCTTTTACTGATTAAGTTGATTAGATTCCTAAGCAACTTTATACTGTGAGCAAATGGCAAACTGTATGCtgtgaacatgtgaaaacaCATGAGGTCTATTTTCTGAATAATGAAACgagatttttatatttcatttgtaaacaaaaatatgattatatGTAAGACTGTAAGAAAAACACTATGagagattttaataaaactgagaAACATTACAGGGTGAATGATCCAAGATATGTTTTACAACTTTATTATGTAATTCACTTCGTGTATAAAtcatattataaattaaaacttAATAATCTTGCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228456 lncRNA downstream 151978 8464309 ~ 8541281 (-) True G192945
TU228465 lncRNA downstream 179789 8480420 ~ 8513470 (-) True G192953
TU228466 lncRNA downstream 208081 8483608 ~ 8485178 (-) True G192954
TU228459 lncRNA downstream 237956 8452197 ~ 8455303 (-) True G192948
TU228447 lncRNA downstream 257175 8429304 ~ 8436084 (-) True G192937
TU228680 lncRNA upstream 181875 8927981 ~ 8928648 (-) True G193138
TU228880 lncRNA upstream 408336 9154442 ~ 9156287 (-) True G193315
TU228886 lncRNA upstream 412085 9158191 ~ 9158569 (-) True G193319
TU228882 lncRNA upstream 413328 9159434 ~ 9184089 (-) True G193316
TU228901 lncRNA upstream 455886 9201992 ~ 9202672 (-) True G193334
XM_026915557.2 mRNA downstream 14863 8674729 ~ 8678396 (-) True wfikkn2b
XM_026914607.2 mRNA downstream 171885 8514561 ~ 8521374 (-) True si:ch1073-272o11.3
XM_026914608.2 mRNA downstream 173461 8514561 ~ 8519798 (-) False si:ch1073-272o11.3
XM_026915448.2 mRNA downstream 242797 8447927 ~ 8450462 (-) True snu13b
XM_026915273.2 mRNA downstream 247580 8440187 ~ 8445679 (-) True crym
XM_026915323.2 mRNA upstream 101556 8847662 ~ 8857748 (-) True si:dkey-94l16.4
XM_026915497.2 mRNA upstream 113098 8859204 ~ 8898061 (-) False mprip
XM_026915499.2 mRNA upstream 113098 8859204 ~ 8898061 (-) False mprip
XM_026915496.2 mRNA upstream 113098 8859204 ~ 8898061 (-) False mprip
XM_026915501.2 mRNA upstream 113098 8859204 ~ 8898061 (-) False mprip
trnal-uag_3 other downstream 217919 8475259 ~ 8475340 (-) True trnal-uag_3
trnap-agg_9 other downstream 234863 8458327 ~ 8458396 (-) True trnap-agg_9
XR_004579320.1 other downstream 2098869 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 2917239 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 3079305 5611120 ~ 5613954 (-) True G191430
XR_004579166.1 other upstream 101556 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 330683 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 331012 9077118 ~ 9077199 (-) True trnal-uag_4
trnaf-aaa other upstream 331460 9077566 ~ 9077647 (-) True trnaf-aaa
trnaa-cgc_2 other upstream 332880 9078986 ~ 9079057 (-) True trnaa-cgc_2

Expression Profile