RNA id: XM_026915891.2


Basic Information

Item Value
RNA id XM_026915891.2
length 2516
RNA type mRNA
GC content 0.48
exon number 2
gene id hs3st3l
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8927805 ~ 8940831 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCTGGCTGCATAACATACTCCACACACTCAGTGCCTTGCCTCTGAATGTTTAAGTAGGCTACAGTGGAGATGAAACACGCCTTCAGCTGCGACCCTCCAATCAAAGGGAGCGTTAAGATGCGCTCGCGTCAAAGGAGTGCAGCACAAGGAGAGTAATTCCCCCGGGAGAGTCACCgcgagaaagacagaaacaaagaTCACTCAGCACGAgcgctgtatttttatttattgtaatgtattctgtttgattttattctggttttttttccacGCTCTTTTTTTTCGCGCGCGAGCGTTGACGCGCTGAGGTAGCGGCTGTCAGACATGGATCCGGAGACACTCGGCTCTTTTCGGTGGCGTTCACTTTCACGGTGCTTTAAAGTTAAACCAGTAACTTCTTGAACACAATGGCGTCCTTCAGTCTCCCTTCAGAGGGATGGCAAGTTCTCGCGCACCTCCGCCGGACCCTTGGAGACTCGCGCGCAAACTTGTAGCCATGCTGTGGTTCGGTGTGGCGTGCGCTTTCCTCCTCTACTTTCTGCGATGCTGCGAATCTGAAGTGACGGAAAGTTTCAGCTTAAGCCGCGACGAGGCGCCGCTCGGAACGGGACGCTACGGTGAGAGGAACGGGACGGTTAGTGTCGGAGCAGacgggaggaagaggaggaagaggaacgCGGGAGACGGCGCGGATGCGGAGGGCTCGATGAAGGAGAAGGACTGGAGGGGCGCGCGCAGGCTGCCGCACGCGCTCATCATCGGCGTGAAGAAAGGCGGCACGCGCGCGCTGCTCGAGTTCCTGAGGCTTCACCCGGACATCCGCGCGCTCGGAGCCGAGCCGCACTTCTTCGACCGGCACTACGCACGCGGCCTCACCTGGTACAGAAGCATGATGCCCAAAGCGCTGGACGGTCAGATTGTGATGGAGAAAACGCCACGATACTTTGTGACAGCCGAGACACCAGCTCGCGTCCACGCCATGTCAAGAGACGTGAAGTTGATCGTGGTGGTGCGTGACCCCGTGACCCGCGCCATCTCCGACTACACTCAGATCGCCTCCAAGACGCCGGGCATCGCCAGCTTTGAAAGCCTGGCTTTTAAGAACAGATCATCAGGTCAGGTGGACTCTCTGTGGAGCCCGCTCTACATTGGCTTGTATGCCCAGCACCTGGAGCGCTGGCTCGCTTATTTCCCACTCTCTCAAATCCACTTTGTCAACGGCGAGCGGCTCGTCAGTGACCCGGCTTTCGAGCTGGGCCGTGTGCAGGACTTCCTGGGTCTGGAGCGTATTATCACAGACAAGCATTTCTACTTCAACAAGACTAAGGGCTTCCCCTGTTTGAAGAAGGCAGAGGGCAGTGCTGAGCCACACTGCTTGGGCAAAACCAAAGGCAGGACACACGTGCATGTTGAACCTGAGGTCATTCACAACCTCAGGGATTTTTACCACCCACACAATCTGCGGTTCTACCAAATGACTGGAATGGATTTTGGGTGGAAGTGATGTTTTTTCCCTCAATCCAGGCACTCAGCCTCACTCATGCAACGTAGCCTAGGAAACTGTGGAGGGTATATTTGCTTTTCTGAGTAAATATTTGATGCAGTTAGTGCTCACATTGGTAACAGAAACTCTGGGTGAGTTATGAGTCATGCAATCTGATCAAGGGTAAAAGATTGCGCAAtcaaatttgcatttggtgatgtttttCTTAAGGCATCAGATGTCAGGTTTCAGGATGACAGCAAAAAAGAAAGCTGAGTATTAATACTTTCAGACCACAGTGGAAAGTGTAGAAGTGTTCAAACACCAGCCATAAACAATAGAGTGGACATCAtttgtaaaatactgtaaaagaAGATGGACTGTAGGATGGCGTGACATTCAAAATGAGGGTTTATGTGACTCTCATTGGCACCATCAAGTGTTAAGACTAATACTTTCCAGAGAAACTGgagctgtgtaaaaaaaaaaaaaagggctggTCCACTGGCTAGTTGAAGCTTTTTCATCAAATGAGCCAAATAgccatttttatattattattatattgcagATTTGTGATATGGACTATCATTAAGAACAGGGAAGTGAGAGAAATCATACTTTCAACATTCTTTGCTATTTGAAAGTGTTTACATTGTTAAGACAACAATTGTAAGTAACTTGACATTGTGTTCATAGATGGAGCTAATAGAAAGCATCATACATTATACATGCATACATTACACATGCGTTCATACATTATGCATAAATCAATAAGTAACATCATTCCCTTTGAAATATGTGAATATCAAAAGAAGTGGCTGGGACATGCTGATCTATTCTTGCATAATGCACTCTCTGTGCAGCCTAAATTCACACACAGTACTAGTTTTTAACTACTAGTGATTGATGATACGGTACACACTCGCAAAGCTGACCTGTGTGTTGCTTGCATGAATTTGCACTAATTTTAAGGAAGcctgttaaattattttcaaatggATGTGTGCATTTGTATGCAATTTCGGAACC

Function

GO:

id name namespace
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K07809 HS3ST3; [heparan sulfate]-glucosamine 3-sulfotransferase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228350 lncRNA upstream 9560 8918040 ~ 8918245 (+) True G192858
XR_004579293.1 lncRNA upstream 326035 8596654 ~ 8601770 (+) True LOC117598667
TU228231 lncRNA upstream 411871 8514382 ~ 8515934 (+) True G192760
TU228197 lncRNA upstream 539688 8310878 ~ 8388117 (+) True G192737
TU228175 lncRNA upstream 657579 8269148 ~ 8270226 (+) True G192716
TU228722 lncRNA downstream 116568 9057399 ~ 9093247 (+) True G193170
TU228721 lncRNA downstream 217328 9158159 ~ 9158568 (+) True G193169
TU228720 lncRNA downstream 218602 9159433 ~ 9184089 (+) True G193168
TU228956 lncRNA downstream 438442 9379273 ~ 9380115 (+) True G193386
TU228960 lncRNA downstream 445312 9386143 ~ 9386394 (+) True G193390
XM_026914717.2 mRNA upstream 21415 8899010 ~ 8906390 (+) True dhrs7cb
XM_026914487.2 mRNA upstream 81124 8836049 ~ 8846681 (+) True bsk146
XM_034309419.1 mRNA upstream 93349 8795009 ~ 8834456 (+) False wu:fj29h11
XM_034309418.1 mRNA upstream 93350 8791190 ~ 8834455 (+) True wu:fj29h11
XM_026914777.2 mRNA downstream 72822 9013653 ~ 9025559 (+) True LOC113527204
XM_026915517.2 mRNA downstream 89421 9030252 ~ 9035170 (+) True pts
XM_026915083.2 mRNA downstream 99993 9040824 ~ 9090546 (+) True LOC113527360
XM_026915082.2 mRNA downstream 106536 9047367 ~ 9090546 (+) False LOC113527360
XM_034309073.1 mRNA downstream 194372 9135203 ~ 9139400 (+) False adprm
TU227843 other upstream 1299694 7605981 ~ 7628111 (+) True G192484
TU227741 other upstream 1491433 7428579 ~ 7436372 (+) True tfam
XR_003402840.2 other upstream 2093548 6822740 ~ 6834257 (+) False asah2
trnap-cgg_7 other upstream 2137860 6789874 ~ 6789945 (+) True trnap-cgg_7
trnap-ugg_20 other upstream 2139039 6788695 ~ 6788766 (+) True trnap-ugg_20
trnaa-ugc_7 other downstream 166855 9107686 ~ 9107757 (+) True trnaa-ugc_7
trnal-aag_6 other downstream 167021 9107852 ~ 9107933 (+) True trnal-aag_6
trnad-guc_4 other downstream 323943 9264774 ~ 9264845 (+) True trnad-guc_4
trnad-guc_5 other downstream 325432 9266263 ~ 9266334 (+) True trnad-guc_5
TU228915 other downstream 327811 9268642 ~ 9271331 (+) False LOC113527534

Expression Profile