RNA id: XM_026915894.2


Basic Information

Item Value
RNA id XM_026915894.2
length 3199
RNA type mRNA
GC content 0.46
exon number 2
gene id socs3b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 13992223 ~ 13996169 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGAAGAGGGGGAAGGGAGGAGTGTGAATACCAGGAATCGTCTCGTAGAAAAAAGGTCACGCTGATTATTTATGGGCAATCCGccaagtgagtgagagaaagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttgcttaCTGGAAGGCAGGGGTGGAGCCGTTCAGAAATATCAGTGGGCTCCCTCTCTGTGAAGAGAGCAAGACTTCCACTACCCCTCATCAGGGGGAGTCATGAGAACGAtatcacacactctacacacactcttctgcCATAAACCCGCTTCCCGACAGCACCACTTTTAACAGCTCATTTCCCAGGGTTTGAAAAGGAGCCCtccagaagagagagagagagggagagggagagggagggagagacgTCCGGTTAAACACCACTACAAGACTGACTCTTTTAAGACTTTCAAGCTGCATCCCATACCCATTGAGCCGTCTTTGATTCTGGATGTTGAGGAGGAGCCGGAGCTGTGGGCATTGTGTTGGTGCTGCGTGGTGCCTGTGCACCCTGGCTGGGACGAGCCCGCGGCCCTGGACCCCCAAGCCGGGACGGGGCACGGGCAGAGCGCCATGGTAACGCACAGCAGGCTCGACAGCGCCATGAGCAGCAGCCCCTTCCAAGGCGGAGTAAGCCTGCCTGCCCACCGCTACAAGACCTTCAGCTCCAGGGCACAGTATCAGATGGTGCTGGCGGCTGTGCGCAAGCTGCAGGAGAGTGGCTTCTACTGGGACGCTGTGAGTGGGAAGGAGGCCAGCGCCCTGCTGAGCACTGAGCCACCCGGCACTTTCCTGGTGCGTGACAGCTCTGACAACCGCCACTTTTTCACCTTAAGCGTCAAGACAGCCACGGGCACCAAGAATCTGCGCATCCAATGTGACGCCTGCTCCTTCTTTTTGCAAACGGACCCGCGCAGCTTGCAAACTGTTCCACGTTTTGATTGTGTGCTGAAACTCATTCATCATTACATGCCCTCTGCCAGAGAAACGGGGGCTGTGGTCTCATCTGGAGTGGACAGTGAAGGTGGCAGCAGTGGAGCAGATGGGAGTACCTACTTCATTTACTCTGGAGGAGAGAAAATCCCACTGGAGCTGCTGCGCCCTCTGGCCTCCAGCATGTCCACACTGCAGCATCTCTGCCGCAAGACACTTAACGGCCACATAGATGTGTCTAGTAAACGGGACCAGCTGCCTCAGTCGCTCCAGGAGTTCCTTGAGGAGTATGATGCACCCATATAACAACCATCACATGGTTCTGGAGCACAGAGACTGAACAAGATATACAGAACTGTATGATGAGCAGTGGTGGAATTGACCAGCAAAAGCCCACAGGAAGATGGAGAGCAGTGCAGTGTTACAAAGCTCTGGAGTTCAATAAGTGTAAGAGTTGTCTGCTCTGAGAAGCTCTCAGCTTCTATCAGTATTGCAGGCCAGCTTTGGCCTACTGTGCCTTCACCCTCTATAGTGTGACCTTTGGCAGGGGGTTGCTGTTTGATGGACAGCACAAAGTATGGACTCGCATGCAATGGGATGAACAGCAGAGCAGCCAGGACCGAAAGCAGATGATCAGAGGCATTCTGCTTTAGCCTCGTATTTTTGGAGTCTGTTCTTGggtctgttttaaaaaaaaaaaaacacaaaccctGTTGAATATTAACACAGTTGATAGGTTATCAGTACAAGGGTTGAATGTGCTGCTATGGCTGAGTTGCAGCCTTTGCTATATGAATATAAAGCTCTCTCACACAGTTTCATCCCCAGTTGACACACTGACTGTTGAAAGAAGAGTTTTGGATGTCTGTGTTTGAGGGAGTGCCTAGTGTCGGCTGTTTGAAATGACATATATATTTCCACTGCGGGCTGCCAAGCATAATTGCCTCATAGGCTGATGTGGGGAAGTAAACGGGGCGGCTACTCACTACTGGCACCGCTGTGTCAACACTGGCAACTGTGCGGGGTCACAACACAGGACTGATGTTTAAAAGTGCATCAATACAAAGGATCAAAGTAGACAAGAGAGGCCTCTGATGTTACAGCAGTCTCAGAAGGAAAGCTTAGTGGACTGTTGTAGCTTTATTTTTGACAGGCAAAGTGTCTCAGTTTTGCTGGGAAATGCCAGATCATTATAGAACATTCAACATGCTGGTGATGATATTACAATACAACACAAACTTCCAAGAGTTGACAGTTCATGTACTGTGAAACAAAGCCAAGCACAGTATGCAAAATCCTTATTTACCAATCCTGGAGTTTGACATGGAGGATCGTGTTCCTCTCAAATCAGAGGCGTTCCTTCTGTATGCGCTAAGAAGTAATCAGTCATGCCTCATATCCCTCATTCAGTAACAATGACGTAGTGTTTCTTCAGCAACACACGCTGTCTACAATTAAATGAATGTATTGTAAGTCAGTGGAAGGGCTTATGGTTCAACTTGTTATTCTTTTCTcgcttttttgtattttgtcaaataGAGACGATGTTTACATGTGTCACCACAAGAGGACAACATGTTTTTTGTACTCTGTCTTTTATAAAGATTTGGCATCTTAAGGTCTAGTCTAATGACCCACAGTGCAAGCTTGAAAATCAGAAAACCTGAAAACAATGGCATTACAACAGAAAATGCAGCAAGGAACTttgcacatatttatatttataaaatatttcgataatttatattaaagagTACTATTTTTACAAAATGGATCTTGTGTGCCTTAACTTTTGTTCAGTCTGTTACTACATTATTacatgcacattttaaaaaagtacttcACATACTTCCCATTTACTACTcatgacacacacaggcacacacagtgataaataTACCACATTACCTCTCTCTATGATACACAAAGGACTGAGGCTCACTTCATTCCTTCATGTTTCACGCCTGTGGATGTCACCTTGTACGTTCTGTTCAGCTCAAAGCAATGAGAATGATAATTTAATGTGAAAAcattcaaatataaatttaacTATTATTATGCATACCATGAAATGAGAGTATGAAATGGGCTTAATTTACTCTTGTGTTTAGAGGCCATAGAGATTCTGTATAGCATTAGATCTAAGCATGAGACTCCAATTCTGGGCTCTTAATGTTTCATTGATTACCAATTCTTTGACTGATTATTTTGCACTGTAAGTAAAAGCTGTTATTAAACCTC

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K04696 SOCS3, CIS3; suppressor of cytokine signaling 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232108 lncRNA upstream 296462 13693715 ~ 13695761 (+) True G195994
TU231960 lncRNA upstream 373284 13618664 ~ 13618939 (+) True G195857
TU231948 lncRNA upstream 474337 13514676 ~ 13517886 (+) True G195847
TU231926 lncRNA upstream 525240 13466765 ~ 13466983 (+) True G195839
XR_003402861.2 lncRNA upstream 925601 13063864 ~ 13066622 (+) True LOC113527319
TU232344 lncRNA downstream 17404 14013573 ~ 14016247 (+) False tha1
TU232348 lncRNA downstream 27418 14023587 ~ 14043932 (+) True G196202
TU232423 lncRNA downstream 130349 14126518 ~ 14127031 (+) True G196265
TU232451 lncRNA downstream 167402 14163571 ~ 14166015 (+) True G196289
TU232454 lncRNA downstream 173139 14169308 ~ 14169812 (+) True G196292
XM_034309193.1 mRNA upstream 17630 13933904 ~ 13974593 (+) True LOC113527468
XM_026915312.2 mRNA upstream 17630 13946147 ~ 13974593 (+) False LOC113527468
XM_034309192.1 mRNA upstream 17630 13949217 ~ 13974593 (+) False LOC113527468
XM_034309191.1 mRNA upstream 17630 13949217 ~ 13974593 (+) False LOC113527468
XM_026915313.2 mRNA upstream 17630 13951793 ~ 13974593 (+) False LOC113527468
XM_034309653.1 mRNA downstream 17443 14013612 ~ 14034143 (+) False tha1
XM_026914595.2 mRNA downstream 26407 14022576 ~ 14034143 (+) True tha1
XM_026915931.2 mRNA downstream 212730 14208899 ~ 14233287 (+) True slc38a10
XM_026915204.2 mRNA downstream 241223 14237392 ~ 14246149 (+) True tepsin
XM_026915135.2 mRNA downstream 254296 14250465 ~ 14253655 (+) True si:dkey-21c1.4
XR_004579176.1 other upstream 433710 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 433794 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 1518484 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 2705955 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 3927597 10064545 ~ 10064626 (+) True trnal-aag_8
TU234137 other downstream 2859601 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 3581114 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 4158982 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 4445717 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 4809916 18806085 ~ 18812262 (+) True si:ch211-221j21.3

Expression Profile