RNA id: XM_034309611.1


Basic Information

Item Value
RNA id XM_034309611.1
length 1457
RNA type mRNA
GC content 0.46
exon number 8
gene id zgc:92313
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5692120 ~ 5709289 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAATGGCGTGTGTAGCTGTGACGCTACAATTGGTCTTGGGCCTGGGCTCAAGCTCAAACGCCTTCCTCTTGAAGATTTAGTGCACTGCTATATGACACAGCCACACCTTATGCAGTGAACCTAAACAGGGAACAGGATGCAGCGTTCTCGCTTTGGTTGGATTTCTGGCTTGTTATTGCTAGGTCTTTGGACAAGTAATGCACAAGAATGCGGTCAGCCACCTCTACAGAGCAGAATAGTTGGAGGATATGATGCAAATGCAGGTCACTGGCCATGGCAAGTTGATATACAGTCCCCTACAGGACATGTATGTGGAGGAACAATCATTGCTGAGAACTGGGTTCTATCTGCAGCTCACTGTTTCCCAAATCCTTCTGACACGTCCCAGTACTTGATCTACGCAGGCCGTCTGCAGCTGAATGGCTGGAACCCATATGAGACGTCTCATCGGATTAGTCGTGTGGTGGTGCCGTATGGCTACACGGACCCGCAGCTGGGCCAGGACATAGCTTTAGTGGAGTTGGCTAGCCCAGTCAAGTGGTCTGATCATGTCCAGCCTGTGTGCCTGCCAAATGCAGATGTTTCGTTTCCTGGAGGAACGCTGTGCACCATCACAGGCTGGGGAGACATTAGAGATGGAATTTCTTTGCAGGGGGTGGGAACTCTGCAGCAGGTGCAGGTGCCAATCATCGATCAGTCTGCCTGCCAGGAGATGTTCCAGATCCAAGCCACAGAGCAGGTTAACATTCGCTATGACATGCTCTGTGCCGGTTTTCAACAGGGGGGCAAAGATTCCTGCCAGGGGGATTCTGGAGGACCGCTGGTGTGCCAAACATCTAGTGGCATCTGGTTACAAGCTGGCATTGTGAGCTTCGGCCTGGGCTGTGCCCAGCCCAACCGGCCGGGTGTCTATGCTAGAGTGTCAGCCTTTTCCAACTTTATTCAGAACAACATTCAGGGACTACAACTGCGTGGTGCAGCGGATCACAACTGGACCGGCTGGCTCATCATACTCACCAGGACTGTAATCGCACTAATTATGGCACATCTGCTGAGATAATGTCAACTTATCTATGCCAAGGGAAGGAAAAATTCACAAACCTCAGGTGACATTAAAAAGAGGCAATGCAGGCAatgattattgtttatatactgtatgttgaatACAATGTTCTGCTTGCCTTTGCATTCAGTGGCTACTCAATGTGCATATTTAGTTTGAATATAGAAAGGTAACACTTTAGTCAGAAGTGATATGCAATTTGCACATTTGAACTGTAAGCAGACtacttttttaatgaaatgtctgTAAACCGCAAGATTTGACAACCATAAATTGAGGAAAATAGGTTTTAACTGTGGGATAGTGTGATCAGGtatttattgatgttttttacgtatcttgctttttttaaatttataactgattgtcataaataaagaactgtgtatagtg

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226656 lncRNA downstream 2552 5688594 ~ 5689568 (-) True G191468
TU226652 lncRNA downstream 22367 5667884 ~ 5669753 (-) True G191464
TU226650 lncRNA downstream 24274 5666173 ~ 5667846 (-) True G191463
TU226605 lncRNA downstream 203009 5488817 ~ 5489111 (-) False gdpd3b
TU226604 lncRNA downstream 207453 5482620 ~ 5484667 (-) True G191424
TU226688 lncRNA upstream 32099 5739978 ~ 5740199 (-) True G191490
TU226700 lncRNA upstream 60649 5768528 ~ 5776020 (-) False LOC113527291
TU226871 lncRNA upstream 227660 5935539 ~ 5938163 (-) True LOC113527731
TU226870 lncRNA upstream 227774 5935653 ~ 5938163 (-) False LOC113527731
TU226872 lncRNA upstream 227774 5935653 ~ 5938213 (-) False LOC113527731
XM_026915461.2 mRNA downstream 14159 5674724 ~ 5677961 (-) True vkorc1
XM_026915836.2 mRNA downstream 73130 5614430 ~ 5618990 (-) True aldoab
XM_026915644.2 mRNA downstream 119231 5555957 ~ 5572889 (-) True si:ch211-180a12.2
XM_034309295.1 mRNA downstream 137215 5545841 ~ 5554905 (-) False LOC117598535
XM_034309355.1 mRNA upstream 62996 5770875 ~ 5791270 (-) True LOC113527291
XM_026914891.2 mRNA upstream 99941 5807820 ~ 5814472 (-) True LOC113527266
XM_026914889.2 mRNA upstream 109813 5817692 ~ 5849431 (-) True LOC113527265
XM_034309034.1 mRNA upstream 159062 5866941 ~ 5882707 (-) True irf3
XM_026914580.2 mRNA upstream 177626 5885505 ~ 5903485 (-) True prr12a
TU226617 other downstream 78166 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 218650 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 389915 5302113 ~ 5302205 (-) True trnai-uau_5
TU226226 other downstream 628725 5059527 ~ 5063395 (-) False LOC113527048
TU226185 other downstream 739261 4949163 ~ 4952859 (-) True G191056
TU226699 other upstream 60649 5768528 ~ 5776020 (-) False LOC113527291
XR_004579320.1 other upstream 840192 6548071 ~ 6594390 (-) False itga3b
trnap-agg_9 other upstream 2750448 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 2767380 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 3139783 8847662 ~ 8857748 (-) False si:dkey-94l16.4

Expression Profile