RNA id: XM_026915899.2


Basic Information

Item Value
RNA id XM_026915899.2
length 3514
RNA type mRNA
GC content 0.46
exon number 9
gene id c12h10orf90
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 19694398 ~ 19719754 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagaaacacacaacagCTTTCAAGGCGAAGTATCTAAgccaaaaaaagagaagaagccGGTTTACACACCGTGGTAGATATGGAGCTTTTCTGTAAGTCTTTTGTTCACTCTGAGCAACATGCATAGTCATACTCATGCTTGACTGGAGACAGCACCACCAGCAGCTCTtcttcagagagaaagagaaagagagagagactgacagaaagggagagagtCTAATAGCGGTGTCCTTCCTAATATTTCCACTGAAGACGTGTTGGAGCAGTTAGATGCTTCCTTTGCATCTAATAACACCGCAGATTGATCTGTTCTCTCCGGGACTACCACACAATTAGCATTCCTGTTTCTCAGAGTTAGAGTCGAAGGAGTTTTTTTCAGATCACAGCCCAAATACTTTTTACCTCCCAGGCGGTTACCGGGGCATCCGAACAgaattgtcctgtgtatttgtgcattttgtgtaaAGGAATCCTTATGGATGTAAAATCCGAAAGCTGGAGACGACAACCTATGCCTCGGAGTCAAGCTGGACAGGACAGCATGTCTCACATAGCATGGAGGAGATCTGGAGATGAAAGTTCCTGGGATAGGCCTCCTCGTGCAGCTCGTCCGCACAGCTGTATTGAAGGCAGACTGAAGGATGAGTGGCTCCAAACATTTAACACTCTACAGACTACTGACATTCATCAGCAGCTGCCTCCTTACCTCCAGAAGAATGACACACCTCGGAGTGTAAGCCCCAGTTTGGTGGCACGCTCTCTGAGCAGTCTGGAGTCTCTATATTCTGGACTGGAGAGCAAAGAAAGGGTTCAAATTAAGACAGGACCGAGTACTCAGAGAGCAAAGGTGTGCTGCCTCGCTCCAGTTCGGATTGGATGGCTGCCCTTACAGAGATATGTGGTGAGGAAGGAGAGGCCGAATAATGCAGATCAACAGGATGGCACCACCTGCAAGgTGAAGCTGAAGCCGCCTATCACCCCTGTATTAAGCTGCAGTTCTGTCAAAGCAAATGGATCAGAGCCAGCAGacggGACTGCTGGACTTGGGGTCAGAGGAATGTCTGGAGCATTCTCTCTACAGGCTGATGATAAAAGAAAGGCCACTCTAGCAGAAAGAGATCAGGACACAGCACTTTATCGGGCCACCAGCGTGCAGAACACATCCCGTGAGAGATTTCTGTGGCAAACCCCAGTGCACAGGAGAGGGAGCGTTCCCCAGGCATCTCTACTCACAGCACCCCCTGTAGGTGGAAGAACGACTCCCAAACACAGCAGCTCTATATCCTCTATCACAATCACCTCCAGGAAGGTCATCCGTTCTGCAAGCCTGCCTGATACTAGCATATCTGGCCAGGATAGAGACAGGGAAGCCAGTCCTATGGCCCTAAACAACCACATCATTGACCCAGATTATACGAACACTCTATGCCCGGCAGAGGTCATTCCACGGAGGAAAGCCCTTGTGGTCAAAATTACTGAGCAACGAGTAGAGACCAGTAGATTTCTGCAGCCAGGTGCTAAAAATGGTCCAGTCTATAGTTTCCCCTCAAGTAAGACTATTGGAGAAAACTATTTCTCATGCCTCTCCACTAGAAGGAGCTCTGATCTTGCAGCTTCTAATCTCTCCAGCGTGAAGAACCACCCCTTACTAGCTTCCTTAAGTGTGACTGGTGGAGATATGTCAAAAATGACCCAAAAAGTGGAAAGTCAATCTCAAGTCCCCTCTTGCCTAGCCACCCAAGAAACCCAGACGCCAGTGGTGCTTCGGAGGAAAGCCACCATTATCAAGGTGCAGGAGCATAGAGATACCTTCAGCAAAAAGGATGAGGACCATAGAAGGAAAGTGGCCTACAGGCACAGCTTCAGTGGCCTCAACGTCACTGACATGAAACCACAATTAAACAATGAATGCATGTTTTCTGGATCTGAGATGCAAGTTGTTAGTAGCAAGACCAAACTATACAAATCCACAATGTCCCTCCAGCTGACATCCTCCAGTGGACCTCGTCTGGATGACTCACACACTTCAAGAGGTTCCCAGCCCCGGAGGCCTGCTAGTTGTTATGCTAGTCTGTTTAGCCCTGTTGAGCCAAATGCTGATGGTTCACAAGATGCTGCAGTTCACAGCACCATTTCTGTGCTTCCCCACGAGACAAATATTGACCCTGCTTGCTCCGCTGCCAGCAGCTCAAACAGGTGTTGGAGCACTGAAGGAGGAGCAGGGAGCCATGACAAGATTTATCCAAGTACAGAGAGCTCTGCTTCAGATAAAGggcagagcaagagagagtCTGCTCTCCCGAGGAACCAGCCTTTAACTCTCATCAAAGTACCAGAAAGCTCAACCCATGAGACCCACGATGCTATAGTGGCCTGGAATGCAGCTGCCATTATAGCCAATATAAAGCTGCAGAGtgagcagaagaagaaaaccCAGACCAATGGCAACACCAGTGGAGGGAGAGACTCCACATCCCAGAGCAAAACTGCAGGGGCCAGAGCTGATAAAGCAAATATTGCTGAGCAGAGTGGAACAGCTTCCTGTCCTGTGGAGAGTGAGACAGCAGCACATATGAAGCTGTTGACCAAACATGCAGAGTTTGCTCCAGTTGTGACCGCTGATGACTTATTATCACGTTCTCACACACACGGTGACAGTGTCAGTCTCAGGCACAAGAGAGACACctgctcaacacacacaaacaccaacactatCACCAACTATCCGCTCAGGGACAGAGAgAAGGTTTTGGATCTGGTTCTGAATAGAGGGAAAGACTGAAACAGTGGGAGAGAGGTTAATGAGCTCATTTTGCTGCTGTCTGTCCGGTCTGTGCCAGCGCACTGAAGCTCCCCGAAGACTCTCCCTCATCCTCACGCTGCAAGCACAACGACTCCAATAACACAATGCATTTCACTAATGAAAATACTCTACATTTATCAAATGACTTCTTTATTAGTGATTACTGATTACCGAGATTAACCTTGCTGAATGTAAGAGCAGGAAATTTACTAAAGTGTGCTACATTGAGGACATTTCAGACTATAGCTGGACATCACAGTTAATGTGTGCCTTAAAGTATTTTAAGTTAGTagcatcaaataaaatattaaatatgactcATTTTCTATcagctttttaaaatcctgtgatatatatactgtatatcagtttACTTTTTAACTGTGGCTATGAAACTTCTTCATACAGCAATATCATGAAGTCTCCCGTAACCTTTAAAGTGCAGGATTTCTGagtttaaaaagtgttaaatgatCCTAGCAAATTGCTGGTGTCATTATATGAAATACACACAGTGACATTTATCACTGCaagcttttatgtttttttttttttttgccaaattggCTGTCCATGGTGCAGTCatgatattaaaatgatttaatatttaattgctcctaaatgttaaatgaccAATTGACCTTATCTGTGTATAATATAGTGCATGGACTGAATGTGATTAAAGCAAACGAAGAGTTTTGTATTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235663 lncRNA upstream 267803 19426380 ~ 19426595 (+) True G199051
XR_003402870.2 lncRNA upstream 379583 19309483 ~ 19314815 (+) True LOC113527366
TU235481 lncRNA upstream 869837 18823633 ~ 18824561 (+) True G198901
TU235464 lncRNA upstream 925708 18768393 ~ 18768690 (+) True G198886
TU235453 lncRNA upstream 990699 18703475 ~ 18703699 (+) True G198876
TU235786 lncRNA downstream 72880 19792634 ~ 19856480 (+) True G199161
TU235814 lncRNA downstream 156987 19876741 ~ 19885988 (+) True G199187
TU235845 lncRNA downstream 224490 19944244 ~ 19944466 (+) True G199216
TU235846 lncRNA downstream 231033 19950787 ~ 19953308 (+) True G199217
XR_004579191.1 lncRNA downstream 515061 20234815 ~ 20251474 (+) False LOC113527335
XM_026915793.2 mRNA upstream 130200 19526642 ~ 19564198 (+) True LOC113527713
XM_026914625.2 mRNA upstream 321049 19370326 ~ 19373349 (+) True LOC113527107
XM_026915567.2 mRNA upstream 773632 18828421 ~ 18920766 (+) False ebf3a
XM_026915906.2 mRNA downstream 7917 19727671 ~ 19825878 (+) True LOC113527774
XM_034309274.1 mRNA downstream 110848 19830602 ~ 19841026 (+) False dhx32a
XM_026914965.2 mRNA downstream 110853 19830607 ~ 19841026 (+) True dhx32a
XM_026914969.2 mRNA downstream 125756 19845510 ~ 19853750 (+) False wbp2
XM_026914968.2 mRNA downstream 125758 19845512 ~ 19853750 (+) True wbp2
XR_004579324.1 other upstream 127714 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 882136 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 882886 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 1184239 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 1535769 18155151 ~ 18158629 (+) False pde6gb
TU237322 other downstream 2283070 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 2288757 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 3078427 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 3485912 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 3604319 23324073 ~ 23329571 (+) True G201214

Expression Profile