RNA id: XM_026915906.2


Basic Information

Item Value
RNA id XM_026915906.2
length 4095
RNA type mRNA
GC content 0.51
exon number 23
gene id LOC113527774
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 19727671 ~ 19825878 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgcgttgGGGACATCCAGCGGCGCgttggctgctctgtgtgtacaGCAGTGTGCAGGAGTGTTGATTGGCGGTGCGCAGGCGCTCTGAAGCTCAGCTGGGAGCTGTGGAAAGTTGAGCATTGCAGGAGCGCGCGGTCTCCAGCAGTGGCGGATCGGATGTTCCTGAAGTTCAGCACATCAgctgttgctctgtgtgtgatGGTGCCGTGAGATCAGTCCGATCTGGCCCTGGTCAGCCCGCTTCGGTCCGGGTCAGATCAGCCTCCCACCGGCAGCATGGCATCCGGAGCTGAGCTCGCGCTCTCGGCTCTCCGCGTCGTGCTGATGCTCGCGGTCTGCTCGGGTGACAGTCTGTCTAACGAAGcaaATCCAACCAATCAGCTGGGGCCTTTGGGTAAAGTGGAACACTATGGCGCTACAGAACCATGGCTTCTTGTTGGTGGGCAGAAAAGACCAATCAGCCTTTTGCAATCAATGggACACCCTGCATCACTGAGGCTCCAGATTGAGGCGGAAGGCAAACAGCTGCTGCTCATTCTGCAGAAAAATGAGGGGCTTTTTGCCACTCactacacagaaacacactacCTGGATGGAGGGAAGCCCGTCACTACCTCACCCAGCTCCAGAGTGAACTGTTACTACCATGGAGAGGTGAAGGGCTATCCACACTCCAATGTCATCCTCAGTACCTGCACAGGACTCAGaGGGCTGATCACCCTTAATGATAAAGTGTTGGTGCTGGAGCCAGCACAGAAGCCCAACAGCACTCTGCATCATATCTTTAGAGGAGAGCACCTCAAGGGACTGAAGCAAGGGACATGTGGACATGGACACAATGTCTCCTACACTGCAGGACTCTCAGACACTACAGGGAGCTTCTTCAGCTCACATGGCAACAGGTACAAGAGACAAGCCCAGAGCAGCACTAAATATGTTGAACTGATCATTGTAGCAGACAACCGAGAGTATCAGAAACAGGGCAAGGATCTGGAGAAAGTGAAACAGAGGCTGGCTGAGATCGCCAACTATGTGGACAAGTTCTACAGAGCACTGAATATCCGTGTGGCCCTGGTAGGCTTGGAGGTGTGGAGTGACTCAGACAAATGCCCTGTCTCTCAGGACCCGTTCACCACACTGCATGAGTTCCTGGACTGGCGGAAACTCAAGCTTTTACCACAGAGACCACATGATAATGCCCAGCTTATCAGTGGGGTGTATTTTCAGGGCACCACCATTGGCATGGCTCCCATCATGAGCATGTGTACAGCTGAGCAGTCAGGGGGCATCGTCATGGACCACTCTGATAACCCCCTTGGAGCTGCAGTTACTTTGGCTCATGAGCTGGGACACAACTTTGGAATGAACCATGACACACCGGAGCGGGGGTGTGGATGCAGGGTGACAGCAGACAGAGGCGGCTGCATCATGACTCCTTCAACTGGGTACCCCTTCCCCACCGTGTTCAGTTCATGCAGTAAGAAAGACCTGTTGGTGAGTTTGGATAAGGGAGTGGGTATGTGTCTCTTCAACATGCCTGAGGTGAAGGTGCTCTACGGAGGGCAGAAATGTGGCAATGGATATGTAGAAGAGGGGGAGGAGTGTGACTGTGGAGATCTCGAGgAATGTATGAACCCGTGCTGTAATGCCAGTACATGCACTCTGAAGTTCAATGCAGTGTGTGCACATGGCCAGTGTTGTGAAGACtgtcagTTGAAGCCTGCAGGTACACAGTGCAGAGAGTCCACTAACTCATGTGATCTGCCGGAGTTTTGCACAGGTTCTGACCCTCACTGTCCCTCTAACGTCTACCTGCACGATGGTCACATGTGTCACGGTGTGGACGGACACTGCTACAATGGCATCTGCCAAACACATGAACAGCAGTGCATCACACTCTGGGGTCAAGGTGCAAAGCCAGCTCCGGGCATCTGTTTTGAGAGGGTGAACTCAGCAGGAGACCCATATGGCAACTGTGGAAAAGACTCCAAGGGCTCATTCGCTAAATGTGAAGCACAAGATGCTAAATGTGGGAAGATCCAGTGTCAGGGCGGGGCAAATCGGCCAGTAATAGGAACCAATGCGGTCTCCATAGAGACCAACATCCCTCTGCCGGAAGGTGGGCGTATCCTGTGCCGGGGGACTCATGTGTATCTAGGTGACGACATGCCTGACCCAGGACTGGTACTAACTGGAACCAAGTGCGGCAACAGCATGATGTGTCTGAATCGGCAGTGTCAAAATGTCAGTGTCTTTGGCGTCCATGAGTGTGCGGCCAAGTGCAGCGGACGTGGGgtgtgtaataataaaaagaattgtCACTGTGAGGCACACTGGGCTCCCCCTTTCTGTGATAAAGCTGGATTTGGAGGCAGTGTGGACAGCGGACCAGTGAGACAAGCagATGGTGAGAGTATAAAGGTGGGCATCGTGGTAGCATTCCTGTGTTTGCTCTTCGTGGCCATGATTGTCTGTGTTAAGAGGAAGACTCTGGTCAGCCTCTTCATCaataacaagaaaaacaacattgaGAAGCTAAGGTCAGTGGGCCCAAGCAGGCTGATCGGTCAAGGAAACACACTCTCAACcccagagacacaaacacacactacatgcaGAGCATCACCTCATTGTCAAGCTCCAGCCATACCACAAAGTACCAGCATATATAAGCCTCAGTGTTCTCTCCCGGTGTTGCACTCTGTTGTTGGTGCTCACACTCTCCACGCTCTGCCCCAGTGTCCTCCACTCCACCTGAGCCCACTGTTACCATTGCCCTTTGCCCCACCCACCCACCGTGCACCTCCACCTCCCCtgccacacacaccctcacctcGCCACAGAGCCCCCCcagcactgcacacacactcccacctCCACACTCCAGCACGAGGAGCCTCCCTCCTCACTTTAAGCTGCCAGAACACCTGCAAGATGGCTAAGGAGTTGGAGAAGCCAAGCCCACCTCAGAAGCCTTTGCCCGCTGACCCGTTAGGACGGAGCTCTCGGCTGGGACGGAGCCCCCTAGCAACACATCTCCCTGCTCCCAGCTCAGCTCCACCCGTCTTACAGCCCAACAGACTGCCTCCGAAGCAGCCCCCCACACTGCCAAAGCCTCAGTTCTTCACAGGAATGAAGAAGCCCTGCAGCTGAGACAGAAGCCTGTGAGACCTGTGGTTCAATCCGTTTTGCACTATGAAACTCTGCTGGTCCTCATGAACAGTGTGTCACGGTCATGACGGCTTGACGGTTCGATCCCTCGGTGCTACGCCTCCCTCCTTCTCCGGTGCTATGAGTCAACACTCAGGTACACATCGTACATTATTTATGTTCGTCAAAAGTATATTTATTTCAACAttgttttggacattttttgtAGCATTATGCCCTGAATTTGATTGGATTTTGAACTGCGTAATGAGTCGAATACTAGCATGATTCAGCAGTCCGGAGGGAGGCACTAAAGAGATATACTCTAACCTGTGAAAATAAACTGAAGACTGTAATGTTGGTGCTTTTTATGCTAGAACTGGAAAGGGGGAAAGGTTAGAAGGGAACAGATGTGCTCTGTTGCTGCATAACATAATGTGTCATAGTCATAGCATAAGGTTGACAGACTCATCTCAGCCCACCATATTGTGAAAGTTGTCTGTAAGTTCACCATACACTTAGAGAGGAAGTAAAACAGCATCTCCTGTAAGCAGTAAAGACAGCCGTGTGTTCCCTCTTCGGACACCATGCGCTCTTGTTCATATAGACACACCTATCCTGAACTTGAGAAACTATATATGGATTTTCATGGCAGTTAGACATTAAACAGTATTAGCTTTGATTGGTGGAAGTCATCTTAAAGTAATACACTGGTGTTTTTCAGTATAATCCCTTTCCACTGCAACTGTAGCATATGTGTGATAACCCCAGAGTAGAATTCCAGTTCGTTTCCTggcactgagaaaagaacagaaaacacatttattagaaACTTACTTATAATGTaaatctaagggcagttgttgaattctgtcactaaacatttacagtactgtgcaaaagtcttaggcaccttattttcttagtacaaactttgttatagat

Function

GO: NA

KEGG:

id description
K06835 ADAM12; disintegrin and metalloproteinase domain-containing protein 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235663 lncRNA upstream 301076 19426380 ~ 19426595 (+) True G199051
XR_003402870.2 lncRNA upstream 412856 19309483 ~ 19314815 (+) True LOC113527366
TU235481 lncRNA upstream 903110 18823633 ~ 18824561 (+) True G198901
TU235464 lncRNA upstream 958981 18768393 ~ 18768690 (+) True G198886
TU235453 lncRNA upstream 1023972 18703475 ~ 18703699 (+) True G198876
TU235814 lncRNA downstream 50863 19876741 ~ 19885988 (+) True G199187
TU235845 lncRNA downstream 118366 19944244 ~ 19944466 (+) True G199216
TU235846 lncRNA downstream 124909 19950787 ~ 19953308 (+) True G199217
XR_004579191.1 lncRNA downstream 408937 20234815 ~ 20251474 (+) False LOC113527335
XR_003402864.2 lncRNA downstream 408938 20234816 ~ 20251474 (+) True LOC113527335
XM_026915899.2 mRNA upstream 7917 19694398 ~ 19719754 (+) True c12h10orf90
XM_026915900.2 mRNA upstream 7917 19694398 ~ 19719754 (+) False c12h10orf90
XM_026915793.2 mRNA upstream 163473 19526642 ~ 19564198 (+) True LOC113527713
XM_026914625.2 mRNA upstream 354322 19370326 ~ 19373349 (+) True LOC113527107
XM_026915569.2 mRNA upstream 806905 18828421 ~ 18920766 (+) False ebf3a
XM_034309274.1 mRNA downstream 4724 19830602 ~ 19841026 (+) False dhx32a
XM_026914965.2 mRNA downstream 4729 19830607 ~ 19841026 (+) True dhx32a
XM_026914969.2 mRNA downstream 19632 19845510 ~ 19853750 (+) False wbp2
XM_026914968.2 mRNA downstream 19634 19845512 ~ 19853750 (+) True wbp2
XM_034309279.1 mRNA downstream 37434 19863312 ~ 19871403 (+) True mrpl38
XR_004579324.1 other upstream 160987 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 915409 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 916159 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 1217512 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 1569042 18155151 ~ 18158629 (+) False pde6gb
TU237322 other downstream 2176946 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 2182633 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 2972303 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 3379788 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 3498195 23324073 ~ 23329571 (+) True G201214

Expression Profile