RNA id: XM_026915912.2


Basic Information

Item Value
RNA id XM_026915912.2
length 2940
RNA type mRNA
GC content 0.43
exon number 7
gene id tlcd3bb
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4977877 ~ 4988518 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACCTAAGGTGACTGCTAAGCTCATGCCTTTGCATCCTGTCCCACTGTGCATCCTGATCAATAATGTAGCATAATAACCGCGAGGGCAACTGAACCGCAggtttaatctttatttatctgcATCCGGCTCCAGTGCAGTCAGCAAAACGCTCTTTTAAAGCATGACCCGAAAAGTGTGCAAGCGCCAGATAAATTAAAGCGGCAGCAGCAGCGACTAAAAAAAGGGCAGATTTAAAGGGCAAGATCGGTGCTGAAGTGCGGATGGGGCAAAGCAGACTAGCCggagaggaagtgagagagtgagagagaaaagcagcatCAGCTCGCATCCTGAAGCGCCTCGGCTCGCACCGCTGCCATCTCACGCACCGTGCACAGACCAGCAAGAAGCAGCCACGACAAGGACACCATGGCGGTGAACTGCGCGCTGTGTCTTGGCCGGACATCGCCGTTGGCTTTTACCGGGATGCGGATTTCTACAGGCCGCTGACTGAAACACCGCAATAGAGGAGGGAAGGACGGCAGAGGTTCTAAAACGGAACGAGTGCTTTGTGAACGCTGCATCAGCTGACCTCACCCACCAACGATCATGTTATCCATCTTGGCTGCGGGCTCTGTGTTTTTCCCAGGGCTCTTCCTCTTGTCCAAGCAGTGTCTGAAACGGCTCCCTGGTCTGAGATGGAGCGAGGGGGATGCAGTCATGGTGTCAGCCAGGTTGGTGTCATCCGTCCAAGCAGTGATGGCCTCCTCAGCTGGTTACATCATCTCAACTTCCTGTGATGACATCATCGAGGATCAGCACTGGCTGACCACCTCCTACATCCTGTTCGCCGTGCCCTACTTCGTGTACGATATATATGCCATGTTCCTGTGCCACTGGCACAAGCttcaggtcaaaggtcacgaGGTGGATAATGGGCCTAAGTCCAAGTCTGTGGCCCTGAGCAGCTACCTCCGCAGAGAGTTCCTCATGGTCTTACATCATGTTGTCATGGTCACCGTGTGCTTCCCCATCTCCGTGTTCTGGAGGCAGGGGAAGGGTGATTACTTCCAGGGCGTCATGTTCTTAGCTGAGCTCAGCACTCCCTCCGTCTGCCTAGGCAAAATCCTTATTCAGTACAAGCAGCAGCACACGCTACTTCACAAAGTGAATGGGGCTCTCATGCTGATCACTTTCTTCATCTGTCGAGTCCTTCTCTTCCCCTACCTCTACTATGTTTACGGCAGGTATGCATCCATTCCTCTTTACCAGGTCCCTCTTGCTGTGCCGTGGCAGTGTAACTTGGGTGCTGCGCTGCTCATGGCACCGCAGCTCTACTGGTTCTCCCTCATCTGCCGCGGGGCTCTACGCTTGTTCACTGGTCGCTCCTCACGTTCCCGTAGCCCCACCTCTCCCTCCAAGCTCCTCCCAGATGGACACGCATCTACTTCTCAGCCAGCCAATGGCTACAGTGGTCGGGTGGCCACTCTAGACCCGCCCACCACCATGATTCACTAAGAGAGACACTGAGCTAAAGAacaaatatatgtgtgtatgtgtgtatgagtttgAGACTAAATGGGTCACAAAATGAGCCTGAATGAATTAACTGtgaagaagaagacaaagataAAATAATCAGAAGAAAAGAAGTGACACTGGATCTGCAGACACAGGAAGTGTAACAGAGTAGTTGTACTACAGCGGTACAGCACTCTTTTTAGCTCCAAGACCCATGTACTGCATATAGGACTGCTTTAGTAGACATATAAGAGCtgtgctcaaaaaaaaaaaaagagactggaATGAACTTTGCGGTTGTGTTTGCACAATAGGCAAGCCTATGTCAGATGCACAAGTTTGAACAACTGAGGCAATATGCgtcattattatgcattatttgaCACTAAATGGGTTATAATGACTGATTAGATAGGCATGTATTGGTTTTGTGCaagaaataatacatttaatgatgAATAGACATGACTgaaattttcacaaaaaaaaaaaatctaaatcaaaatgcaaatattttcaaataaaagttaGGTTTATGTAAAACCCAACTGGCAATAAAACCTAAATTAGTTTCATAAGCAAGATCTTGCTTACTTAAaacagagattaaacacagatcTGCAAAGACATCAAACACTATTGAGCTTTTTCAACCTCTATAGAAAGACCTTTCTGGAatgtattattttgtacatGCTAGTTCCTTGTTTTTAGACAGCCTGGCTAAGCTTAATAACTGAAGCATAAAAGAAAAGGTGAGATGCTACTCGAAAGTCCTGTCCTAAGGCCTTATGGAGACCTGTACATTGACTTTAAGGCAGAACATTCAGGTAGATCTTAACCAGCACTATCAgctgtatctatctatatatctatctctatatatatactACTTGTATATACAAAGATAAAATAGACAACCCTGAATTTATAGGTGAaaacaaatgatcaaatatataAGCTGCCTTAtcctttttgtaattttgtgtaattttagtttatatttgctttttggttATAggagaatattaaaaaaaaaaaaaaaacaactacagtGTGGACAAGGCAAAGGGGAAAACATTCtcttaacatttttatttatgcttaGTCTTTgatgacaatttttttgtttgttgtaagttccaatttatttattcattctttcattaaaatatattttatttaattatttagtgttttttttaaatttatttaattatttactctTCTGTCCACTCGGTCCAAGATTTATGTTCATTATCTTACTGGTTATGAAAATGTATGTTGAAACTCATAGCCTGTATTGAATTCCTAAATTATTAAAGTTAATATGACCCTAATGGACATATGACCCTACAGTAAACCTGAAATGCTTGCAATTGCTGTCTTGCTTTTCAGTTTTTGGAAAGTAATAAACTACATACAGGAGGGAAACTACA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225933 lncRNA upstream 138508 4755097 ~ 4839369 (+) False G190865
TU225936 lncRNA upstream 138508 4755097 ~ 4839369 (+) True G190865
TU225852 lncRNA upstream 349001 4625619 ~ 4628876 (+) True G190797
TU225848 lncRNA upstream 380948 4596690 ~ 4596929 (+) True G190795
TU225827 lncRNA upstream 491121 4486523 ~ 4486756 (+) True G190775
TU226075 lncRNA downstream 70999 5059517 ~ 5063419 (+) True G190964
TU226144 lncRNA downstream 267923 5256441 ~ 5262085 (+) True G191026
TU226154 lncRNA downstream 280729 5269247 ~ 5282643 (+) True G191032
TU226403 lncRNA downstream 314623 5303141 ~ 5304909 (+) False gngt2b
TU226407 lncRNA downstream 319701 5308219 ~ 5309374 (+) True G191258
XM_026915353.2 mRNA upstream 5868 4962360 ~ 4972009 (+) True maz
XM_026914978.2 mRNA upstream 16268 4922230 ~ 4961609 (+) True taok2b
XM_026915918.2 mRNA upstream 140836 4828170 ~ 4837041 (+) True prkar1ab
XM_026915625.2 mRNA upstream 167344 4787766 ~ 4810533 (+) True mms19
XM_026915253.2 mRNA upstream 227027 4731130 ~ 4750850 (+) True antxr1c
XM_026914593.2 mRNA downstream 10373 4998891 ~ 5005921 (+) True vps25
XM_026915710.2 mRNA downstream 22069 5010587 ~ 5059438 (+) True wnk4a
XM_026915711.2 mRNA downstream 22069 5010587 ~ 5059438 (+) False wnk4a
XM_026915778.2 mRNA downstream 75077 5063595 ~ 5070223 (+) True cntd1
XM_034309452.1 mRNA downstream 89000 5077518 ~ 5250512 (+) True tanc2b
TU225934 other upstream 138508 4755097 ~ 4839369 (+) False G190865
TU225847 other upstream 382764 4593107 ~ 4595113 (+) False lrrc18b
trnae-cuc_25 other upstream 544565 4433241 ~ 4433312 (+) True trnae-cuc_25
TU225438 other upstream 1195382 3782131 ~ 3782495 (+) False rasd1
TU225191 other upstream 1572868 3401267 ~ 3405009 (+) True G190212
TU226411 other downstream 348735 5337253 ~ 5340563 (+) False LOC113527051
TU226808 other downstream 981225 5969743 ~ 5983237 (+) True G191581
trnas-gcu_1 other downstream 1227327 6215845 ~ 6215926 (+) True trnas-gcu_1
trnal-aag_2 other downstream 1227849 6216367 ~ 6216448 (+) True trnal-aag_2
trnal-uag other downstream 1234199 6222717 ~ 6222798 (+) True trnal-uag

Expression Profile