RNA id: XM_026915937.2


Basic Information

Item Value
RNA id XM_026915937.2
length 3485
RNA type mRNA
GC content 0.45
exon number 14
gene id plxdc1
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9606131 ~ 9627459 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTCTGCCTGCCCTCAAAAgtaggcagagagagagacatcaagagagaaagaacagggAGGTGGACAACTCTTTTTCTCAGCTGGTCTGCCTGCCTGTCCCGCCTTGAACTCTCGCATTACCATGACTACAACATCCGAGAATTTAGTGGAAGAAAGCACAGCAGCAGAGTGAAAGAAGAAGACAAgaatctgtttctttttcttcctaaGTGGAAAACAGTGAGAGAGGAGGGGAAGAGCAGAGGGAGGgaagagacagaaaataaagtAGAGTAAGAAAAAGAGCTTGTCAGAGTATACACAGAAAAGAGGAGCAAGGTGACACGGGAGGAGCCGAGgagggagaagagaggagaggaggaggaagaagaggagaggagtgagTGAAGGACTGAGAGAACGCTGGTCATGGGTCTGTGCGCTGTGTTGCTCATCTGTCTGTCCCAGGCAGAGCTTGCCAGAGTCTGGAGTCAAGAGCTATCAGGTTCACTGCATGGACAGTCAGATGTACAGAGAGTCAGGAGAGATCAGCAGGAGTCGAGCCGGagtacacagaacagaacaggcCAGGAGGCAAACGGAGGAGGCCTCGCCATCGACACACTGCCCGACAACATGACCAAAGTGGTGGAGGACGCTCAAAAGTATTACTCATGGCGTAGCTTTGGCCCCACTGACAGACGAACTCAGGAGCTCTGGGTGGACCTGAATTCAGTCCAGGAGGGCCAAGTAAGGGTGCACGGCATcctgtccaacacacaccgaCAGGCAGCGCGGGTGGCCCTTTCCTTTGACTTCCCCTTCTATGGACATCAAGTGAGGCAAATCACCATAGCAACTGGAGGGTTCATTTTCACTGGAGAGATTACGCATCGCATGCTGACGGCCACCCAGTACATTGCACCTCTCATGGCCAACTTTGACCCCAGTTTCTCAAGGAACTCCACTGTGTGCTACTTGGACAATGGTGAGGTGTTTGTTGTGCAGTGGGATAAGGTGAGGCTACAGGGCAGGGAGGCAGAGGGAGCCTTCACCTTCCAGGCTGCTCTTCACCGCAACGGGACCATTGTTTTTGGCTACAGAGACGTGCCTTTACCAGTAGTAAAGATCAACTCTACTGAGCACCCAGTGAAGGTTGGTCTGTCTGATGCCTTCATGGCCTTTATTTCTTCCCCACAATCCCCAGAATCGAAAAGGAGGACGATCTACGAATATCATCGGGTTGAAGTCAACACCACTGAGATTGTAAACCGCTCTGCATTCGTGTTCAGCCCGTTACCTACCTGCCTCCAACACACCAACTGTGACCAGtgtctccactccaacctcaCCACAGGCTGCGGCTGGTGCAACATCCTGCAGAGgtgtTCAGATGGGATAGACCGGCACAGACAGGAATGGATTGACTTCAGCTGCTCAGAGGAGGCGAAGGAGGGCACGTGTGAAGATTACAGTCAGGGAGGTGCAGACAGTTCGATGAGTCCATTCAGCTCCCCTGTTCCTGCTGCTACACCGTCCCCTGCAGCTAGGCCAGGCAGCCCTGTCACTGAGGACGACACCAAACTTCTCTTTCACCACCATGATAATGATTTGCAGAAGGGTTCTCCTGGTGAAGAGGAGCCTCCAGAACACACTGCAATTATTGCGGGTGTAGTGGCAGCCTTGGTCCTACTGGTCTTCTTGACCCTGCTGGCTGTGtactatataaacacacaccccACTGTCGCGCCTCCATTCTACCTCATGCAGCGCCGAACCAATAACTATTGGCCGTCCATGAAGTTTCGCAATCAGGGTTGCCATTCCAGCTATGCTGAGGTTGAACTTGGGTTTCATGAAAAGGACGGCTTTATTGAGGCAGAGCAGTGCTGAGGAGGCAGGACTTCCTCTACAAAGGAGCCAGTTAATCTCTGTTTTTTTGGTAAAAGttcaaacatgaaaaaaagacaatgagGGGCTGTTAACCACCACATGAATGGACACCAGAGACTGTGGATAGTTACCTTGCAAGCTTTCTCTGCCTCCATAGATTTGACAGTCCTTCCTGCAACACCTCTTGTGCTATttgtttattccttttattaaGGAACAGGCAATGTTAATGGCAAATGTGCTAGCTACGCTCTTGGTAAAGGCGGTAAGAGTGGCACATGCATTAACCATGAAGAGTCCTGCAGTTAGTGTACAGTACAATACAACTTTgtagaatttcatttttaaaagatgatgttttgtgttttataatatgttcaatggaaaaaaataatactcaGTTAGCCACATGGACTGGACTGCACTTTAAATGAATTATCTCAGTAGTAATAGTGATATTATGTGATCTAATTTTTTTGAccctttttatattttgtgccCTAGGATCAAGTTTCAGGTATCAGTATTGCAAGCATAGCACCCTCATCAatagacaatttaaaaaaaaaactatagaaaCCATACTGGGTTTTTAAAGGGGcagtttgtttcttttaaagctTTCTACTGCCTGTGAGGTGAATTGCAATGATACACTGACaagcataaatgataaataaattcTCCCCCTAGCTTACCCCAGCCCCTCTGTGAAATTATGTattcttcatattttttaaggaaaagaGAAATAGCTGAGCAGCTCTGTTCCAGCTGGAGCAGAGCTGGTTTCTGCatcagaaaaatgtgaaaagaagGCTGAAATTAAACTAGCATACTGGATTTTCTTTATAATATCTttgaaattatatgattattatacaGAGATGGGTACTCAAGTTAGGGACTCGGATTTGAGTTGCACTTGAGTTGCACATTGACTGACTCATGATTTCACTTGGACTTGAGACTGAACACTTGTGAAATTCCAACTTGGATAATAATatgaacacaaacactaatAAATTCGGACTTGAGACATGACTCAGACTTCAGCTAAGAGACTTCTGACTTGGCTCAGACTTGCAGTTCAGTGACTTGAGACTTGTCATGGACTTGCAGCTCAGAGACTTGAGAGTTGGCTTGGACTTGCAGCTCAGAGACTTGTGACTTGATTCAGACTTGCAGCTCGGTGACTTGGGACATGACTTGGACTTGCAAAAAGTGATTTGCAAGCATCTCTGATAAAGGTCTAGAAACTTTTAAAGATCATAAGCATGCACCTTTAAAGGAATTGTAAAATCTCATTACCCAAGAATGATGATCTCTttcttaaaaatacaaatggaatCCAGTTCCAATCAGGGAAATGGTTTGAAATTACTGTCTAACATATTACTGTTCTGACATAACTCATATGCAAGCACTAATTGTTACAATTTGAAATTGTAATTGCATGTCAGATGTTTGATACAAAGATCTGATTTTGGCAAAGAAAATGGCAAAACTGGTACATTGTTGTTGAGGgtttaaattgcattaaaatgtcattttgaatATAAAGTGTGCTTTTAGTGAACCAATAAAGTGAAAATACTGTTTTGAAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229098 lncRNA upstream 18312 9587165 ~ 9587819 (+) True G193509
TU229034 lncRNA upstream 89992 9515921 ~ 9516139 (+) True G193458
TU229031 lncRNA upstream 90669 9512821 ~ 9515462 (+) False mrpl58
TU229030 lncRNA upstream 93730 9512185 ~ 9512401 (+) True trnaq-cug_13
TU228960 lncRNA upstream 219737 9386143 ~ 9386394 (+) True G193390
TU229133 lncRNA downstream 24713 9652172 ~ 9653260 (+) True G193542
TU229145 lncRNA downstream 36471 9663930 ~ 9665516 (+) False arhgap23b
TU229153 lncRNA downstream 67450 9694909 ~ 9780955 (+) True G193544
TU229297 lncRNA downstream 196588 9824047 ~ 9824468 (+) True G193645
TU229298 lncRNA downstream 197968 9825427 ~ 9826864 (+) True G193646
XM_026915708.2 mRNA upstream 46754 9523356 ~ 9559377 (+) True LOC113527682
XM_026914917.2 mRNA upstream 90515 9512784 ~ 9515616 (+) True mrpl58
XM_034309459.1 mRNA upstream 248170 9268493 ~ 9357961 (+) True LOC113527534
XM_034309460.1 mRNA upstream 248170 9315978 ~ 9357961 (+) False LOC113527534
XM_026914687.2 mRNA upstream 449843 9142501 ~ 9156288 (+) True map2k4b
XM_026914963.2 mRNA downstream 3206 9630665 ~ 9643176 (+) True LOC113527304
XM_026914493.2 mRNA downstream 27828 9655287 ~ 9691595 (+) False arhgap23b
XM_026914491.2 mRNA downstream 36436 9663895 ~ 9691595 (+) False arhgap23b
XM_034309649.1 mRNA downstream 39552 9667011 ~ 9691595 (+) False arhgap23b
XM_026914494.2 mRNA downstream 42239 9669698 ~ 9689737 (+) False arhgap23b
trnaq-cug_15 other upstream 92296 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 93500 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 93891 9512169 ~ 9512240 (+) False trnaq-cug_13
trnar-ccu_4 other upstream 96335 9509724 ~ 9509796 (+) True trnar-ccu_4
TU228953 other upstream 236216 9368243 ~ 9369915 (+) True G193383
XR_003402888.1 other downstream 7418 9634877 ~ 9635067 (+) True LOC113527805
trnal-aag_8 other downstream 437086 10064545 ~ 10064626 (+) True trnal-aag_8
trnaq-cug_16 other downstream 1658738 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 2845224 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 3855842 13483301 ~ 13558513 (+) False tcf7l2

Expression Profile