RNA id: XM_026915947.2


Basic Information

Item Value
RNA id XM_026915947.2
length 6866
RNA type mRNA
GC content 0.48
exon number 23
gene id nrxn1a
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 17125184 ~ 17274561 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTCCGGGTGCTGACGGTGCCTGGCGAAGCTCAGCTGAGAAAACACCTCGACCGCAAAACACCGAGCGGGCGCTTCTCTTTTCTACATCCGTGCgaagtgtaaataattttgtacaGTTCAGGCGGGTAGAATGAGCGGTTCTGTAGTCTAGTTGAATGCGGTATTTCTGGCTCTAAATTTCTAACCCCATCAGCACTTTTAGGGGGATCCGCATACAATAACTGCGCGTCTCTGATTTCTTTTGCGTTTCCCGCAACACCGATGCGGTGGTATTTCTCTGccaaataagaaagaaagaaagaaaaaaaaaaaatctaaattgaTGCGGAAATCATCAGGCTTCGTCGGGGAAGCTGCGGATCAAAGGATCACACGATGGACTTTGTCTCAAGATTGCGGATCAGTATGACAAACTGGATGTGATTAGAGAGATTGTGAGCACTGAAGGCCCTACAGGGGCCTGCATATTAGCCTCACTTTGAGaagtttctatttttctttgtcTACGTGATACTTGGCCAACACAATGACTATTAATTAATCTATTCATATGACCCATGGTGGCCTAATTTACTTGCACCCTGTATATACGTGACTTCGTGTGATGGATACCTTGACAAATACCTTGATAAATGCCCCACTACAGCCCGTTTATATTCCATTGAGGGAATTTTAAATCTGCCTACATTTTAGTAGAATTATTTAGGATTATTCATATTTTAGCTAAATACTTGCTACATTTATTACATTGGCTAACACTCCAGCTATATGCTGTCTACATTAATTAAGATTAGGCCATAACGTAGGCCTTCTCTTTTCTTGAGAACAATGAGTAAAGGAAAATTAGCCCGAATTTATAGCTGTCACAGAGAACCCATTTCTGTTTTAAGACTGTAAACCTAAAACAATTAATTATATACCATTTTAGATTAGTCTTGTTATCACTTTTCTGAATTCACCATGAGCTTCTCCATGCGCAGCAGTGTGCATATAATTTGGATAGGCCTACTGGTTTGTTGCCTGGTTGACATAGGGGCCAGCATGGAGTTCACTGGTGCTGAAGGCCAGTGGGCGAGGTTTCCGATGTGGAATGCTTGCTGTGAAAGCGAGATGAGTttcaacatgaaaacaaaaagctCACATGGACTTTTAGTGTACTTTGACGACGAGGGATTCTGTGACTTCTTGGAACTTCTGCTCCATAACGGTAGACTCAGTCTGCGCTTCTCAATCTTCTGTGCTGAGCCCGCCACTGTACTATCCGATACTGCGGTCAATGACAGCCGTTGGCATGCGGTCACGGTGCGCAGGAATTTCAAAAACACCACTTTAATTGTGGATGAAGAAATCAAGTGGGTGGAAGTGAAATCTAAAAGAAGGGACATGACTGTGTTCAGTCATTTATTCTTAGGGGGGATACCTCCCGAACTGCGCTCAGTAGCCCTACGGCTCACATCTTCGTCCATCAAAGACCAGGTTCCGTACAAAGGATGGATAACCAATTTGAAGGTGAATGGTTCGGAGCCGACGATAATTGGTAGTGAGGGGATCAACAGTGACATTTGTGAAGCAGACCATGTTTGCCTGAATGGAGGAGTGTGCAGCATCGTCAACGACGAACCCATCTGTGACTGCTCCGAAACAGGATTCCAGGGGAAAGACTGCAGTGAAGAAGAGGTCTACGTTGGAGGTCTTGCGCACCTGATGATGGGCGACCAAGGTAAAAGTAAAGTGAGAGAGGAGTATGTGGCGACCTTCAAGGGCTCGGAGTACTTCTGTTACGACCTCTCTCCAAACCCCATCCAGAGCAGCAGTGATGAGATCACGCTCTCCTTCAAGACCCTGCAGCGCAATGGCTTGATGCTCCACACGGGCAAATCGGCTGACTACGTCAACCTGGCGCTGAAGAACGGTGCTGTCTCGCTGGTCATCAACTTGGGCTCTGGGGCCTTCGAGGCCCTGGTTGAGCCTGTCAATGGGAAATTTAATGACAATGCCTGGCATGATGTGAAGGTTACCAGGAACCTCCGTCAGCACTCAGGCATTGGACACGCTATGGTTACAATATCCGTGGATGGGATTCTCACCACCACTGGATATACACAAGAGGACTACACCATGCTAGGCTCCGATGACTTTTTCTATGTCGGGGGCAGCCCCAGCACTGCCGATCTGCCTGGATCTCCTGTTAGCAACAACTTTATGGGCTGCCTCAAGGAGGTTGTGTACAAGAACAACGATGTGAGGTTGGAGCTATCTCGTCTGGCCAAACAAGGCGACCCCAAGATGAAGGTTAGTGGAATGGTGGCGTTCAAGTGTGAGAACGTGGCCACGCTGGACCCTGTCACCTTCGAGACCCCCGAGTCCTACATCACCCTCAGCAAGTGGACTGCAAAGAAAGCTGGTTCCATCTCCTTTGATTTTCGCACCACCGAGCCCAACGGACTGCTGCTCTTTAGCCACGGCAAGcccaagcagcagcagcagaaagaCCCCAAGGGCCCCAAAACTATGAAGGTGGACTTCTTTGCTATTGAAATGCTTGATGGCCACCTTTACCTTCTACTAGACATGGGTTCAGGCACAACCAAGACCCGGGCCGTCAACAAGAAGGTCAACGATGGAGAATGGTACCATGTGGACTTCCAGAGAGATGGCAGATCAGGCACCATCTCTGTCAACTCAGTACGTACCCCCTATAACGCTCCCGGCGAGAGTGAGATCCTGGATCTGGATGACACTCTGTACCTGGGTGGTTTGCCGGAAGACCGTGCTGGCTTGGTGTTTCCCACCGAGGTGTGGACTGCACTGCTCAACTATGGTTACGTGGGCTGTGTGCGCGACCTGTTCATGGACGGCCAGAGCAAAGACATCCGGCGCATTGCTGAGGCACAGAGAGCTGTGGGTGTCAAACCTTCCTGCTCCAAAGAACCTCCAAAGCAGTGCCTGAGCAACCCATGCCTGAACAGCGGCTCATGCAGGGAGGGCTGGAACCGCTACGTGTGTGACTGCTCAGGGACTGGCTACCTGGGTCGCTCCTGTGAGAGAGatgCCACTATCCTCAGTTATGATGGCAGTAAGTTTATGAAGATCAAGCTGCCGGTGGTGATGCACACCGAGGCAGAGGACGTGTCACTGCGCTTCCGCTCCCAGCGAGCTTACGGTGTTCTGATGGCCACAACCTCTCGCAACTCTGCAGACACACTCCGCCTGGAGCTGGACGGAGGGCGGGTCCGACTCACGGTCAATCTAGACTGTATCAGGATTAACTGTACTACCAGTAAGGGCCCTGAGACCATCTTTGCGGGTCAGAACCTGAATGATAATGAATGGCACACGGTCCGTGTGGTCAGAAGGGGGAAAAGTCTGAAGCTTACAGTGGATGACCTGCAGCCCTCAGAAGGCCAAATTACAGGCGACCACACACAGCTAGAGTTCCATAACATCGAGACGGGCATCGTTACAGAAAAGCTCTACATGCCTGCTGTTCCTTCAAACTTCATCGGGCACCTGCAGGGCCTGTCCTTCAATGGCATGTCCTATATCGACCTGTGCAAGAATGGGGACATTGACTACTGTGAGCTAAATGCCATGATTGGCTACAAGAGCATCGTGGCAGACCCGGTGACCTTCAAGTCTCGTACCAGTTATGTGACCCTACCAACTCTGCAGGCCTACTACTCCATGCACCTATTCCTCCAGTTCAAGACCACTTCCCCTGATGGACTGATCCTCTACAACCGAGGAGATGGCAATGACTTTATTGTGGTGGAACTGGTTAAAGGTTATCTGCATTATGTATCTGATTTGGGAAATGGTGCTCACCTCATCAAAGGCAATTCTAACACACCTCTCAACGACAATCACTGGCATAACGTGATGATCTCACGtgacaccaacaacctccacacaGTCAAGATCGACACCAAGATCACCACACAAACCACTATGGGGGCTAAGAACTTGGATCTGAAAGGTGACCTGTTTGTTGGAGGAGTGTCTAAAGATATGTATAAGGACTTACCAAAGCTGGTGCACTCTAAAGAGGGCTTTCAGGGCTGCCTGGCATCTGTGGACTTAAACGGCCGTTTGCCGGACCTGCTGTCAGACGCACTGAGCACTACAGGACAGGTGGAGCGGGGCTGTGAAGGTCCCAGCACTACCTGTCAGGAAGATTCGTGCTCCAATCAGGGTGTGTGTCTGCAGCAGTGGGAGGGCTTTACCTGTGACTGCAGTATGACGTCGTTTGGAGGGCCGCTCTGCAACGATGCGGGAACTACGTACATATTTGGGCGTGATGGTGGGTTGATTGTGTACACCTGGCCACCCAATGACAGGCCAAGCACGAGGGCGGACCGTCTTGCAGTTGGCTTCAGCACGCAGCAGAAGGACGCAGTGCTGGTCAGAGTGGACAGCTCATCTGGCCTCGGAGACTACTTGCAATTGCAGATAGACAAAGGCAATATCAGAGTGGTGTTCAATGTGGGCACAGATGACATAAATATTGAAGAAACCTCAAAGTTTGTAAATGATGGAAAGTACCACATAGTTCGCTTTACAAGGAGTGGTGGTAATGCCACTTTGCAGGTGGATGATCTGCCAGTCATTGAGCGATACCCAACAGGCAACATTGATAACGAACGCCTGGCGATTGCTAGACAGCGAATCCCATATCGGCTCGGTCGAGTAGTTGACGAATGGCTACTCGACAAAGGTCGGCAGCTCACCATCTTCAACAGCCAGACTACCATAAAGATCGGTGGTGGTGAACGGGGCAGTCGGCCATTTCAGGGCCAGTTGTCTGGCCTGTACTACAACGGCCTCAAAGTGCTGAACATGGCTGCCGAGGGTGAACCCAACGTGCGCGTGGAGGGCAGCGCCCGTCTGGTTGGTGACTTGCCCTCCTCGTCCATCACACCCCAGTCCAGTGCCTCTGCCTCGGGCAACCGCTCTGAAGCTTCGCCCTCATTGACGgacatcaccaccaccacggCGTCCAACCGACAGGGCAAGCAGACCACAACACCACAGGACGATCTGTTAGTAGCATCAGCTGAATGTCCCACTGATGATGAAGACATTGATCCATGTGACCCAACCTCAGGTGGGTTAGCACACCCTCCCTTGCCGGAAGCGAAAGGTTACCCGAGCCCGGAGGTGATCCGCGAGTCCAGCAGCACCACGGGCATGGTGGTGGGCATCGTAGCAGCCGCCGCCCTCtgcatcctcatcctcctctacGCCATGTACAAATACCGCAACCGTGACGAGGGCTCGTACCACGTGGACGAGAGCCGCAACTACATCAGTAACTCAGCCACACAGCCCAACGGAGCTGCGGTCAAAGAAAAACCCATCGGCGTGGCCAAGATCTCTAGcaagaacaaaaagaacaaagacaAAGAGTACTACGTCTGATCCCACAGACTTTTTCCCCTCCCAGTTCCTGTGTTCAGAAGCACACAGGCGAAAGGGAGGAGACACCAACCCTGTGTATAGtaattaagaggaaaaaaagcacagtCTTAGTTTTAACTGAGACACAGATATACTGTTACTAACAATAAGAACATATACTTTATACTCAAGCACACATGAACTATACAAAGCTATGCGTGTGTACAAAAGGAATTGAGTGAGAATGACAGGAACCTTGAAATTGAAAATCAATCCTCTGGACAGGGACAAGCCAGTACAACCCTGTATGCTAGGGTGAATCTCTTAAAGACATGGCCACTGGTCAGAACTGAGGTCTTACTGTGTTTCATATTATGTTGCCTGTGTATGTGTTACTGGGACATGCCCTCTACATGCAGAAAATCCATAAACATCtggaaaattaaaaagacattcactaaatgagaggaaaaagagactTATTACACTGAGAAGCTACCTACTGTATGATCGTTCAATCAGCCAAAGTATTCGCCCCCTCTTTTCTAATGGCAGTGTTGGCCATCTGGAGACAGAACCAAACTGAAGATAAAGATGAAGGATCCAAACATAAGTCAATATCAAGGATGAATACCTTGGGTCAAAGAGGACTATGGAGGCCTTATTATGAAGCAAAGTGTAAAATCGAtcgttgtttttgtttgtatgtttgtcaTGATAATGACAGCAGCGATGCGGTGGTGATGCTGATGATTAAGGTAAAGAACGGTGGGGTCGTTTGGCGATAGTTTGAGAAATACTCCATGCACGTGAAGTATCTTATTACATATGTTTATATACGGTGCAAAGACTATCTATGTGTGCTCTCTGGACTGTGGCTGAAGTGGTGTTTTATAGCCTGTTATATAGATGATGCCAACTACAGTATACCTGCTCTTCAAACATTTTCTAGTAAAAGCAACtgggaaaatgattaaaaacagaaaaaaatctaaatgttaaTGTGTTGCTATAGAGATAGAACCGTTTCTGCCATTAGCTATGAACCTTTGGgctcctgtatttttttttctcctttatgcGCACCTTCAATGCCAGTATTTTATTTCTGCCACTACCTTTTGTTTTCGCAACTACTCCTCGTGTCAACAtacaaaagacacaaacacCAGTTTCGTGTTTGGAAAAAAGCAAACCATCGCAAAGTAAAATGATTGGAATTGTTGAAGCAATATCATTTTGCTATTCTGACATGGATTTATTATGAGATGACatcatgatgtaaaaaaatgacagtgaacTGGATCCCAAAATATTAtgtattgaaatatttcagCCAGAAGACACAAATCTCAACAAGaactaaaaatgtattgtttgtgAACACTCCTCTTTGCTATATTGTACTACACTGAATGCACAAGAGgcacaaaatacataaaatttcagaataaatgttagattttt

Function

GO:

id name namespace
GO:0051965 positive regulation of synapse assembly biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0090129 positive regulation of synapse maturation biological_process
GO:0007155 cell adhesion biological_process
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K07377 NRXN; neurexin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579295.1 lncRNA upstream 81938 17030750 ~ 17043247 (+) True LOC117598668
TU234194 lncRNA upstream 171174 16943946 ~ 16954011 (+) True G197803
TU234207 lncRNA upstream 218043 16906830 ~ 16907142 (+) True G197816
TU234113 lncRNA upstream 360858 16764008 ~ 16764327 (+) True G197726
XR_004579312.1 lncRNA upstream 361640 16758145 ~ 16763545 (+) False LOC117598690
TU234450 lncRNA downstream 53213 17327774 ~ 17327950 (+) True G198007
TU234451 lncRNA downstream 71455 17346016 ~ 17348598 (+) True G198008
TU234498 lncRNA downstream 126844 17401405 ~ 17403628 (+) True G198041
TU234506 lncRNA downstream 131142 17405703 ~ 17411141 (+) True G198045
TU234503 lncRNA downstream 136893 17411454 ~ 17415869 (+) False G198044
XM_026914655.2 mRNA upstream 96263 17022725 ~ 17028922 (+) True asb3
XM_026914791.2 mRNA upstream 201957 16901393 ~ 16923228 (+) False slc9a3r1a
XM_026914790.2 mRNA upstream 201957 16901395 ~ 16923228 (+) True slc9a3r1a
XM_026914789.2 mRNA upstream 225455 16890365 ~ 16899730 (+) True narf
XM_026914880.2 mRNA downstream 41703 17316264 ~ 17326970 (+) True fshr
XM_026915604.2 mRNA downstream 193575 17468136 ~ 17473825 (+) True gch2
XM_026915218.2 mRNA downstream 205662 17480223 ~ 17487726 (+) True pigf
XM_026915018.2 mRNA downstream 271232 17545793 ~ 17572065 (+) True mta3
XM_026915019.2 mRNA downstream 271232 17545793 ~ 17572065 (+) False mta3
TU234137 other upstream 261690 16855770 ~ 16863495 (+) False anapc16
XR_004579176.1 other upstream 3566672 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 3566756 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 4651446 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 5838917 11286197 ~ 11286268 (+) True trnaq-cug_16
trnai-uau_6 other downstream 302722 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 880590 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 1167325 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 1531524 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other downstream 1531562 18806123 ~ 18811512 (+) False si:ch211-221j21.3