RNA id: XM_026915961.2


Basic Information

Item Value
RNA id XM_026915961.2
length 5672
RNA type mRNA
GC content 0.49
exon number 23
gene id grid2ipb
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10669180 ~ 10690023 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCAGAGTCAATGTGACGGAGAAAAGGATTTCGGCACCGTGTGCCCCTCAGCTTTTTATGTGTCAATACTCTGCATGGTTGACTTTGGTGATGGAGGGCATTGGGAAGGTTCTACTCCTTGCCTGCTAATGTTTGACTAGAGGATGTGTTGAACGCGCATTTAGGAGGCACTTAGGTGGGAGACGtgcactggatgttttttcttatgGCTATAACCATCGACACTTGTTGACTCGGGCAAAATGAAGAGATTCCTGCAAAATAAGAAAGGGAGGTACTCTTTACGCCAAAACCAGAAGTCTGGCCCACGTTATCCACCTAAAGATTTCTTTTTTACCATGCCAACATCTAACCAGGGCTGGCCAGAGGAGTTTGGCTTCCAGCTTGGGGGCACTGGGCCCAGCTATATCCTTACAGTGGAGGAGGGTAGCAGTGCTCACCTATCTGGCCTGCAGCCTGGAGACCAGGTGCTGGAGATTGAAGGGCAGGATGTGTCCAGTCTGGGAGCTCAGGCTGTCATCGCCCTGGCACAGGCACAAAAGAACATCCCACCCAGCATTGGCGTGGTCTCCAGAATACAGCAGATGGATATTACCCCAGGCCCTGATGGTCGTTTTGGCTTTACTATCGTGGGAgactgccccctgctggtggAGGACTGCTCTCCCTGCTCCCCTGCTGGGCGCAGTGGTCTGAGGGCTGGTGATTATGTCATGGAAGTGAATGGAATCCCTGTGAAGCATCATGAGATGGCTGCTGCCTTAATAAAGGCATCACAGGGTCGCACGCTGCGCCTTGGAGTGCTCTGCATGGGCAGCCGGCAGAAGCGTAGCAGCATAGATGAGTGGCAGAAAGGCAGCGAAGGCCCGCGGCTGGACCGCAAACATAAAGCCTTAGAGTTCAATAAAAGGATTGAGGAGGTGTTGGGGAGCGAGCCTGAGGTGAAAGAGAAGCTGTTTGCCGTGCTAAAGCAGTTTGCTGCTGAGAGGAAGGTGGACTGGCTGGCATCTGTTCTTCCTGACATCCTGACCACTGAGGAGCAGCAACAACTCATTTCTAATGTCAGGATCTTCATCCCCAAGAAGCACCGGCAGAGGTTTGATGAAGCCGTCTCCCAAAGTCTTCTCAACCGCGTGTGCCGCAGTAAGAGCGTGAGCGAGCCAGGCCAGAACCGACTGCGCCGCAGCCGCAGCCAGGAGCACCATGAGCGGCCACATGCCTCCAAAAGGGCCAGCTCAGTTCCCAGAGACACCGGAGAGAACCATGAACGTGGCCACAAGAAGAGCACATCTGGCATCCCCAGCATCCCCCCCACTGGAGCAAATCAGAgGACCATCCGTGTGTACAGAGGAAAGAAGAGCTTTGGGTTCACGCTCAGAGGCCATGCTCCTGTGTGGATCGACTCTGTCATTCCAGATAGCCCTGCTGAGGAGTGTGGCCTTAAACCAGGAGATCGTATTCTGTTTCTCAATGGGCTGGATATGAGGAATTGCTCCCACGAGAAGGTGGTATCAATGCTGCAGGGCAGTGGCGCCAATCCCACTCTGGTGGTGGAAGAGGGGCCGGTGCTATACTCTCCATCAGACTCTGAAACCGAAGAGACTCCCTCACTCCCTTGCTCTCACTCCCCTGCCCTCAGCTCCCTGCAGTGGGTAGCAGAGATCCTTCCTCCTAGCATCCGCGTGCATGGCCGCACCTTCAGTCAGCAGCTCGAGCACCTCCTCACCACGCAAGAGAGATACACAATCTGCAAGGCTCTCGAGACCTTCTTTCAGCACAGGAATGTGGACACACTCATTGTGGATGTTTTTCCTGTGCTGGACACTCCTGCCAAGCAGCTGATCTGGCAGTTCATCTATCAGCTTTTGACCTGTGAGGAGCAGGAGCGCTGTAAGAGCAAGATCTCCCGCTTCCTGGGCTTCAAAGGAGCAGAGCCTGAACTGGGCACAGAAAATCACAGACGGAGCAGCTCCATGAGGGTGACTGGAACATCCCACAGAAACAGTGTCCGAGAAAGAAGCTCAGATGATTGCATCATTGGCACTCATTTAGGAATGGGGACTTTCACTGAGCCTGCAACCCCAGGAGAAAGACAATGTGGCGATGGGACCTCCTTTCCCGAGTCCCCAGATTTGAACCACATATCAGGAGTGTACACAGAGCTGGAGAGTGCATACACGGTGAAGAACAGCCAGCCTCTGCAGAGTAACTCATCACCTGGGAATGAGGGCATGAGCCATGCTGACAGCCATgcactcactctctccttcACACATGCTAAAAAAGGGAACCGTAAGTCAGGCCTGTCCCTGACATGGAAGGAGCCCTGCTCCAGCCCTCAGTATGACCTCTACCAGCAGACCATCCCTTCTCCTGGAAGCATGGACTCTAACCCCTATGTCAGCCTGGACAGCTCTCCTACCTCCCCTCAGCACTCAGATGAGGCCCCAAGCCCTCAGCCTCGTCGAAAAAAACTTTTCACTTTCTCCAGACCCCCACGCAGCCGAGACACAGACAAATTCCTGGATGCCCTGAGTGAACAGCTTGGCCACCGAGTCACCATTGTGGATAACTTTCTGGGAGGCGAGAATGACTatgaagagATGAGTTTCCAGGAGGAACAGGACAACATATTGTCTCGTCAAGCGAGCAGTGCGAGCAGCGAGGACCACAGCAGTGAGGATTCAAGCTCGCTAACCTACTCGTCTGAATCAGAGCAAATCCCACCCCCTCCCCGGAGCCCCCCACCCCCGCCCCCACCCATTCAGTTCACTGACACGCCCTCCCCCATCTGCCTCACCCCACAACACATGCCTCAACCTCCTCCTGCCTTCCAGAACCACCCCATCATACCCCCTCCACCACCCCCTCCTCGGTTCATCCTCTCCAACCGGCCATCTCGTCACCAAGTGCTGCCTACATGCAAGGAGACAAGGTTCCATCACACCCAGCCCCGAAAGCCCTATTCTCAGCCTTCTGTTCATGCCAGCCAACAACTTCACCAACCCAAAGCCCACCCCATCCTGCATTCATCCCCTCACACATCCCCACAACCTCCTCACACATCCCAAAAGCCTCCTCACACATCCCCACAGCCTCCTCAAACATCGTCTCTGCCTGCTCACACATCCGCACATCCCCCATTGAGGCACCGCACCCAGTCCATCTACCAGAGCCAGCAGAGCTCAGCCATGCAGCCCAAAGCAAAGAGAGATTCACCACAGTCTACCCGTAAGACCTATGAGAGTACCATCTCAAAGGTAACACCACCACCCCCACCTCCACTGCCCCCACCCTGCGAACCCCCACCTCTGCCAAAGCCAAGCCCTCAGGCTTCAGATACCAACCACATGAGTGTGAAGAGGCTCCGCTGGGAGCAGGTGGAGAATTCTGAGGGCACTATCTGGGGACAGCTTGGAGAGGACCCTGACTATGGCAAATTGAGTGACATGGTGAAATACCTCAATCTGGAGCTGCACTTTGGCACACAAGCAGGTTCCATTTCTCTTCCAGAGCCCGCCATTCTACCTGAGagctttaaaaagaaagatgtgGTCGAGATTCTCTCTCATAAAAAAGCCTACAATGCTTCTATCCTCATAGCCCATCTGAAGCTGTCTCCAGGAGAGTTACGAAAGGTCCTCATGACTATGAGCACTGAGCGTCTGGAGCCTTCTCACATTAAGCAGCTTTTGCTGTATGctcctgatgatgatgaggttAAACAGTTCCAGCAGTATGACCAGGATCCTGCCAAGCTTAGTGAACCTGACAAGTTTGTCCTTCAGATGTTGCTAGTGCCTGAGTATAAAACCAGATTGCGGAGTCTCCTGTTTAAAACAACCCTGCAGGAGAAAACTGAAGAAATGCGACTTGGTTATGAGTGCATCTACAAAGCCTCCCTAGAactaaaaaacagcaaaaaactTGCAAAGATCCTGGAGtttgtcTTAGCAATGGGAAACTATCTTAATAATGGCCAACCCAGGACAAATAAACCCACAGGCTTTAAAATCAACTTCCTTACTGAGCTCAGCACAACAAAAACAGTAGATGGGAAGTCAACCTTTCTCCATATTCTAGCCAAATCACTACGCCAACACTTTCCCGAACTTCTCAACTTTGCAGGAGAGCTTATAACAGTGCCACTGGCTGCCAAAGTGAATCAGAGAACCATTACAGCAGACCTCAGTGATCTCCACTCCACTATCCAGGAAATCAGGACTGCCTGTCTAAAGATCCCAGCCACAGCAGAAGATCGATTTGCAGCAGTCATGAGTAGCTTCCTAGAAAACTCGCATCCAGTTGTGCAGTCTCTGGACTCTCATCAGCAGAAAGCAATGGATGAGTTTGCCAAGGTAGCCTCTTACTTTGGAGAAGACAGCAAGGCCACGACCACAGAAGCATTCTTTGGCATCTTTGCCGAATTCATTTCTAAGTTTGGGAGAGCACTAAATGAGACGCAGGCCACAGAAAACCCCAGGAGTCCTCGCATTGCTTCACCTTTAGCCTGGTGAGAATATGCTTTAGAATTGCTGCTCTCATAAACTAAGGCCATCCATGTGCCAAGAACTTGACAAAACAACAGGTGAAGCAAAGAATTTAATCTAAGTTAATGACCTACATGTTAAGAGTGTAACTTCAtcataaagaatatatattttatacaacttTAAAGCTATCAAGGATATGGAtatagtttcattattttttaaaaaagtttctaGTGGCAAGAGAATGTAACAAGAATGTGAGCACTTTAAAATTCTTTCACCCACAGTTGATGATAATATAGTCAgctgtttattaattattcctTTCACTGATGAATACTGACCAAAAACTTGCTGACAGACTATAATGATGGATGGGTGTTAATCGTGTTAGTCAGCAGCATATCAACATTGTAAACAGATGATTAATTTTTGCTCAGCATTAGTGTTGTCACTGTCATTTGCTGAGAAGAGACCCTGCCACACTGATAATGGCCACTTATTTTGTCTGATCTGTTTGAACAGTGGCAAagctgtgcatgaaaaactgtACAGTGTAACAATACTTATTATGAAACTGTCATCTATGAGCTCTCTTTGCTGTGACAATTAAAATCTGAATGAAAATGCATAGGTCTGTTTTTAGTCTCAATGAAATGGCCCTGTGTTTacatcttgtttgttttatgtttacatGGTAAATTATTATGCAGCTTGGCAGATTTTTCCTAGAaataatgtttgaaatgttCTTTCTGCCTGATGTTTTGTGTTCCCAACAATCTATTAGTAGCCTCCTTATTAAATCCAAATGCATGGACAACTAATTGCTTGTCTTTGTGTCAAAAACAAACACCCATGttcctttttttgtctgtcctttttcaaACCAGTGACAGTATTTTGACAGGTTAATCTACAATTTGCATGTagcattgtgtttatttttgttggcaaataattttattattcttaacGTAGGCCTAACCATTGGTTTCCTTTTAACCTGTATTTCACGGTAGGACTTAGGTGTATTGGTGTATAGATTGTTTGTGAATAGGATAGTATTTATCCTGTGCAGTTCTCTTTCAGCTTCACTTTCTTTGGGCCACATTGGGCTGCATTTTATTCTGCTGTCTAATTTATATCTTGTGAATAAACAAAACTTCTGACAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229865 lncRNA upstream 6718 10594229 ~ 10662463 (+) True G194091
TU229857 lncRNA upstream 8231 10659878 ~ 10660950 (+) True G194087
TU229853 lncRNA upstream 22728 10644938 ~ 10646453 (+) False msrb1b
TU229700 lncRNA upstream 318561 10350199 ~ 10350620 (+) True G193972
TU229536 lncRNA upstream 332934 10325640 ~ 10336247 (+) True G193828
TU229892 lncRNA downstream 21298 10711321 ~ 10712015 (+) True G194113
TU230004 lncRNA downstream 90640 10780663 ~ 10780884 (+) True G194201
XR_003402886.1 lncRNA downstream 98744 10788767 ~ 10790017 (+) True LOC113527761
TU230092 lncRNA downstream 274927 10964950 ~ 10965617 (+) True G194276
TU230097 lncRNA downstream 275615 10965638 ~ 10968033 (+) True G194278
XM_026915079.2 mRNA upstream 14149 10651288 ~ 10655032 (+) True mlst8
XM_026915072.2 mRNA upstream 17820 10647273 ~ 10651361 (+) True meiob
XM_026915348.2 mRNA downstream 525 10690548 ~ 10693499 (+) True LOC113527483
XM_026914588.2 mRNA downstream 23791 10713814 ~ 10720682 (+) False lcmt1
XM_026914589.2 mRNA downstream 23805 10713828 ~ 10720682 (+) True lcmt1
XM_026914645.2 mRNA downstream 32417 10722440 ~ 10724659 (+) True aqp8a.1
XM_026914752.2 mRNA downstream 36670 10726693 ~ 10728551 (+) True aqp8a.2
trnal-aag_8 other upstream 604555 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1034114 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 1155346 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 1156550 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 1156941 9512169 ~ 9512240 (+) False trnaq-cug_13
trnaq-cug_16 other downstream 596174 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 1782660 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 2793278 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 2793278 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 6165747 16855770 ~ 16863495 (+) False anapc16

Expression Profile