RNA id: XM_034309190.1


Basic Information

Item Value
RNA id XM_034309190.1
length 6754
RNA type mRNA
GC content 0.49
exon number 41
gene id svila
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 15527593 ~ 15604496 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTATTCCCATCtctgtccttttttctctctctctatctgtcctcATTCCAGGcttctctttatcttttttccaaaatgtatCAGAACGCGTGGATTGCCAACTATCTTAGCCATGTCAAGTGCTGTCAAGGCATCACAGGGGAGGCCATCACCAAAGTTGCCAGACCCAAACTACAACAAAGGGCTTTTAGTTTTCAGAAACAGTTCTCATCTGAGGATAAAGACGACGTTGCCCAGACCACAAAGGCTGTTGATGTCAATCCTATCATCTCTCTACCCAAAGTCTCAGAGTTAAGAAAACGTTTTGAGCACATCAGTAATAGTCAACGTGACTGCTGGGACATGAACAGGAAAGAACGGATTGCACGGCGGCTGGAAGGAATTGACAACGACATTCAGTTCTCACTTCCAAGTGCTGGTCTGGTGACCAATCGCCTATTGGAGGAAGACACTCCCAGATACACTCGTGCCACAGACTTGTGTGACCCATGCACAGTTCCTGTTCAGCACTTTAGCAAAGATGAGTCTGATCTGTCAGACCCTCACAGCTCCGAGAGTGTGTCACTCCCCCGGAGCCGGATGGAGACACACATGGCCCTAAATGAGCCTGCCTATAACCCCTGCTCTGCTGTAACAACCGAGCAGGAGTCTAAAGCTGAGCGCATCGCCCGCTACAAGGCTGAACGCAGACGCCAGCTCTGTGAGCGCTACCGCATCTTACTGGatgaagagacagacacagaccaTGCCAGCCAGTATTCCAGAATGCGTCGGGACCCTGAGGGATCTGAGCGCCAGTACAGGGGGCAGGTGGAGGGAAGAGACGAGGTCGAGCATAATGCCAACACCTCTGACGTTCATGCAGGTAGAATCACTGCTCAGGCCAGTGTGGAGCAGGAGTGCAGCAGGGAGCAGGCTGAGGTGTTCTCTGAACATGAGAAGAGAATGAATCTGGAAAATCAGAAAAGGGCACAAGACCGAGGAAGAATGCATGGAGAAGGAGTAGCTCCAGACCACTCTGCCCCTTACATAGACACTTCAGGGGAGACCAGAGCCTCAAGGGAAGAGGGGGTGACTGGCTCGCCCAAGGCAAGCCGACCTGCAAAGCAAGTGGCTTCTCCTGGGGATTTATTTAGTGAACAGCAGGCCCATAACGTCCTCCACAAGCAAGGGTGTTGCCCAATCCCAGAACCACAAATCACTGAAGTGGATGAGGAGAAGTTGGATGAGAGAGCAAAGTTGAGTGTTGCTGCCAAACGTTCTCTCTTCAGgGAGTTGGAGAAAAGTGTGGATGGTGGAGCTTTGAAGACACAAAACCAAAACGCTGCTTTAACACGCAGACTGAGAAGAGGTCAGGACCGCTACCGTACCCAGCCCATCACATCAGAGGAAGTCGTCATTGCTGCTACTTCCCCTGGTCCCTTGTCACAGACTGTGTCTGTTCATTCTTCAGTAACACGTGTTCCTAGTCCCACTGTAATCAGCAGCACAGTCACCCAGCACAGCTCTGTGGTGAGGGAGCAGGCACGCGAGGCCCGACTCCTGCAGGAGACAGCAGAGGCGGATAAGGTTCGCCACACTGAAGAAAGCCAGGAGGAGCCTGACCTGTCCACTCTCAGCCTGGCGGAGAAAATGGCCATCTTTAACAAACTCACACAGCAGTCCAGTGTCAACCCCATCCGCTACAGAGACACGCGGGCACGGCGCAGTAATGCCCGCTATCAGACCCAGCCCATCATTCCTGGAGAGGTGGAGCAGGATGGCTCGGACTCTGATCTTTATGAGGAGGAGATGCAGTACTCAGATGGACTGAGTGATCTGGACCATGTTGGAGGTGACTCTCATTTCACCCCCTCCTCCTCTGCTGTAAACTCTACCACGGTTTCTACAGTTCATGCAGGTGATATCCATCTGGCCCAACCCAGTGTGTCCAACAGCTTTAATGAACGAGATGTGCCACCTTGGCACCAATCACAACCTCCTTCAACACTTCAGAACCACAAAGGTCCCTCTGAGCTGcctggagctgagagagagGAGTCCAGCCTGGGTGTGGGGGTGAGGAGACTGCCCTCTCCAGAGAAAGTGAAGCAGCCAAACAGAGAGGCAGTGACTTCATGTGACCTccaggagacagacagatatcaGAGGTCAAGATCAGCAGTGGCAGGTCTTCCTGAGCAGGCTGTTTCAGTGAGAGCCGCAGCAGCGCTGACTGCATCTCAACCCTTGAACGGGAACACGTCTCTcccgcagcacacacacactcagcagttGCTTGAGTCTGGCAGAGAGGCTGTCTCAGAGGACAGGGAGaggaccagagagagagaacaagacacAGAAGAGGCAGAGGAGATATCAGACATCATGACGGCGAGGCAGATTTCCATCAAAGAGAGGCTGGCTCTGCTGAGGAAGAGCGGTGAGGAGGACTGGAGGAACAGGATCAATAAGAAGCAGGATGTTGTCAAAGTGGCCATTTCAGAGAAACATGCTCAGCTGTGGGAGGTGGAGCAGACCTTTAAGAAGAAGGGCAATGGATTGATAGATGAGTTTGCAGTCTCTGATCAGCTCTGGGAGCCTGTCttttcttccactttttcctCTGTGCCTCTGAGTGCCTCTGAGTCTCTGGATCCCATCGAGCCCCTTTcccagACACAACCCTTGCTTATGCAGGCAGATGAACGTCACCCCTGGAGACGCAAGAGGATAGGAGATGAGGTAGTGGAGAGCCAGCAAATCGAGCGCATGGAGATGTCCATACAAGAACGGAAGAAGCTCATCACAGCTCAAGAGGATGCTTGGAAGGTCAAAGGTTGTGGAGCTGCCAATGACTCCACTCAGTTTACTGTGGCTGGTCGTATGGTCAAGAAAGGTCTTGCAGCCCCCATGGTGCTTCCAAAGCCAGGATTTACTTCTACATCATTCAAAAACAAGAATGCCATCTCCAAACCTCAGGAAGAGATTGAGGTCCGAGACGATATAAAACTTGAGTCAGACAAGAAGCTGGAAAAGCTGGAGTCCTTCTTGGGTCGGCTCAACAGTAAAGTGGGTGGGCTTCAGGAGTCCACACTTACAGTAACGGAGAAGACAGTTAAAGAGGTCATGACTCTGGACGATGAGTGTTTTGATAAGTTCTACAGGCACACTGAGGAACTGGCCAATATCTCCAGTAAAGTGGAGATTGACGATGACTTCGATGCCATCTTTGGAGCTCAGATGCCAAAGCTGACCTCAGAGATGGTGCAGCACAAGCGTGCAGTACGTCCAGCCCGAAACGTGCAGTCATCCAGGAACCCTCTGAAGCTGCTGGCTGCACGAGAGGACATCAGACATGAGTACACAGAGCAAAGACTTAACATTGGTGTGCTAGAGAGCAAGAGGATCACTCAGGAGAAGAtgtgtaaGAACAGTGGGTTCTCTGCCGTGGCTCTGGCAGGCTTAGCGAGTAAGGAGAACTTCAGCAGTGTGAGTCTGCGGAATGTGAAGGTCTCAGAGCAGAGCTCCCACAACAGTGCCATGCCTTACAAGGCCACCATGCTCATGCAGGTCAAAGGCCGACGACATGTCCAGACGAGGTTGGTCGAGCCTAGAGCTTCCTCTCTGAACAGTGGCGATTGTTTCCTCCTGGTTACACCCCAGTACTGCTTTATCTGGATAGGAGAGTTTGCAAATGTCATTGAGAAAGCCAAAGCTGCAGAGCTGGCAACATTCATCCAGACCAAGCATGATCTTGGATGCAGAGCTTCTTATGTTCACACCATAGAGGAGGGTATCAATACCCACAGCCATGCATCCAAGGATTTCTGGAAGATTCTGGGAGGGCAGACCAGCTACCAAGCTGCAGGGACTCCAGAGGAAGATGAGTTTTATGAGACCGCCATAGTGGAGACAAACTGTGTCTACAGGTTGCATGAGGACAAGCTGGTGCCTGATGATGATTACTGGGGCAGAATACCACGCTGCTCCATGCTTAGCCCTACAGAGgtgcTGGTGTTTGATTTTGGCAGTGAGGTGTATGTGTGGCATGGTAAAGAGGTGACATTGGCGCAAAGAAAAGTGGCATTTCAGCTGGCAAAGCACCTCTGGAATGGGACATTTGACTACACAACCTGTGATATCAACCCACTAGATCCAGGAGAGTGCAACTCACTTATCCCCAGgaaaGGGCAAGGTCGGCCAGACTGGGCTGTATTTGGCAGAATGACCCAGCACAATGAGACTACACTGTTTAAGGAGAAGTTTCTAGACTGGAGTGACTCCAAGAAGGCTTCAGCAAAGAATGATGACATACAAGCTATTGAGCACAAGGAGGTGCAGAGTGGCGAATGCAGATCATATGATGTGTCTCTGATGTTGCCGTTGTCCCATGCCCCTGTTCGGACTGTTCTGGACGGTGTGGACGTGGGGCGAGGTTATGGAATGATTGAGGGAGATGACAGGAGGAACTTTGAGATTAGCACTCTGTCTGTGGATGTGTGGCATATCCTGGAGTTTGACTACAGTCGGCTGCCTAAGCAGAGCATCGGGCAGTTCCATGAGGGAGACACATATGTAGTTAAATGGAAGTACATGGTCAGTGCAGCGGttGGAAAAAGGCTGAATTCTGAACGGATTGTTGGCCCGGGTAAGGAGAGGTGTGCATACTTCTTCTGGCAGGGTCGTAATGCCACTGTTAGTGAGAAGGGAACGTCTGCTCTCATGACTGTGGAGCTGGATGAGGAGAGAGGAGCACAGGTCCAGGTGCAGCAGGGGAAGGAACCCCCCTGTTTCCTACAGTGTTTTAATGGAGGGATGATGATTCAtgcaggaaagagagaagaggaagaagagaataCACAGAATGACTGGAGGTTGTACTGTGTGAGAGGAGAGAAGCCAGTAGAGGGCCACCTGCTGGAGGTGGTGTGTCACTGCAGCAGCCTGCGCTCTCGCACCTCCGTGATTCTGCTCAACATCCCCAAAGCCAGCATGTACCTGTGGCATGGCTGCAAGGCCCAAGCACACACACGGGACGTGGGTCGCACTGCTGCTAACAAGATCAAAGAGCAGTGTCCTCTTGAGGCGGGACTTCACAGCAGTAGCAAAGTGACCATCCAGGAGTGTGAGGAAGGCACTGAACCAGTAGGATTCTGGGAAGCTCTTGGGAGACGTGACCGCAAGGCATATGACTGTATGATTCATGATTTGGGGAAGTTTAACTTTACACCGCGGTTATACCACTTAAGCAGTACATCAGGGGAGTTTGTTGCTGTGGAGTTGATCTCTCCATCCAGAGAGCCGAATCTGGTCAACTCGATGCCTTTCCACCAGGAAGATCTGTATAATGTCCCTCAGCCAGCTCTGTTTTTGGTAGATAATCATCATGAGGTGTACCTGTGGCAGGGCTGGTGGTCTCGGGACAGTGAGAACACAGGCTCCGCCCGCATCCGATGGGACTTAGACAGGAAGTGTGCCATGGAAACTGTGCTCCAGTACTGCCGAGAGAAGAATGAGAAGAAGCCTCCAAAAGCCTACCTGATTCATGCAGGACTGGAGCCACTTACATTCACTAACATGTTCCCCTGCTGGGAGCACAGAGAGGACATCGCTGAGATCACAGAGAAGGAAGCAGAAGTATGTAATCAGATCATACTAGTGGAAGACGTGTTGGCCAGACTCTGTAAGACCACCTATCCACTGGCTGATCTCATGGCCCGGCCTTTACCAGAAGGTGTCGACCCTCTGCACCTCGAGCTCTACCTGTCAGACGAAGACTTTGAGGGTGTAGGGGCCTATGGGAAGAAAGCACTGGAGATGAACAGGATGGAGTATGAAGCTTTGCCAGGATGGAAGCAGGTGAATTTGAAGAAAGCCAAAGGATTGTTCTAGTGGGTTTAAGAGTATGAAGATGTACAGACGGGGCGATAATCGCTGTTGAAGTGCTGAAAGACATGGAACATGCATGTGGTGCATCTCACACTCCCTTTTTAGCTGAACTTTATAAATGTACACATGTGGATGTGCTGGTGTGAGTGCACTGGAAAggaatataaaaagaaaagaaaggagcgATGGATATGGACAGAGATCAGCAGAGGTTTACCAGCCTCTTGGAGCATCTCTCTTTCTATTCCccttttttcagtttgttaaaCTGTAAAAAGCTGTAAATTACTGTAATGTTTCTTTGATCGAGAGTTTGTGTTTTCCagctttttttgttcattccACTACATGTCCATGTAGCAGAAGTCAAGCTGCCATTATGGTTTCCTGTAAACTAAAATAGAAAAGATCTAATATAATTTGATTAATGCAATGGTCACACCACACCAGCAGACTGTTTTTTGCTTTAAAGTGCTAACCATTATTTTTACTCGCATAAACACTTAACAGGGATTTTGTTGCAGTACATGTACAGTAGAGTATGAATATTTACAGAGATAATAATGTACTAATGATCCTGTCTAATGTCACTCACAGCCTGATCTACATGCCATTACAAATTCCCCTGCTATCATACAGGTGCTGAAAGGTGTGGGTGTGACTGagtaatgtgtgagtgtgtggttaacatgaattgaattaaatattgTTGAACTGGAGGTGAATTAAATCTCCTTGCTCAGATTCTACAGTGTATAGTGCCTTCGCTTTTATGTACAgtttatataatgaaatataatagtatgcaattttaatatttttgtgactatataaataatatcagaGGGAAATAAAACAGTGAACGATGAAAATACGCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233452 lncRNA upstream 285891 15267299 ~ 15268740 (+) True G197174
TU232570 lncRNA upstream 939974 14613088 ~ 14614657 (+) False G196387
TU232569 lncRNA upstream 939974 14613289 ~ 14614657 (+) False G196387
TU232568 lncRNA upstream 940171 14613088 ~ 14614460 (+) False G196387
TU233737 lncRNA downstream 100636 15705132 ~ 15714087 (+) True G197397
TU233741 lncRNA downstream 117099 15721595 ~ 15722402 (+) True G197399
TU233783 lncRNA downstream 249438 15853934 ~ 15856543 (+) True G197434
TU233857 lncRNA downstream 441807 16046303 ~ 16046505 (+) True G197498
TU233860 lncRNA downstream 445100 16049596 ~ 16049892 (+) True G197501
XM_026915257.2 mRNA upstream 39587 15489191 ~ 15515044 (+) False jcada
XM_026914901.2 mRNA downstream 796 15605292 ~ 15614870 (+) True LOC113527272
XM_026914941.2 mRNA downstream 91267 15695763 ~ 15755399 (+) False zeb1b
XM_026914942.2 mRNA downstream 92279 15696775 ~ 15755399 (+) True zeb1b
XM_026915585.2 mRNA downstream 1166741 16771237 ~ 16777328 (+) True ppa1a
XM_026915913.2 mRNA downstream 1173793 16778289 ~ 16783706 (+) True sar1aa
XR_004579176.1 other upstream 1996118 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 1996202 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 3080892 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 4268363 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 5490005 10064545 ~ 10064626 (+) True trnal-aag_8
TU234137 other downstream 1251274 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 1972787 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 2550655 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 2837390 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 3201589 18806085 ~ 18812262 (+) True si:ch211-221j21.3

Expression Profile