RNA id: XM_026928106.2


Basic Information

Item Value
RNA id XM_026928106.2
length 4508
RNA type mRNA
GC content 0.50
exon number 11
gene id ccser2b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 137521 ~ 222419 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacacacacactcccacacacacacacacgcgcgttATAGAagataatatgtttatttataatttatctgTAATGTGTCCACTGACGCTCTTATAGCGACTGCAGGCCGGTTTGTGCAGGAAGTGTCCGCgcatctgtgtgtttatttccgTCGAGTCACCGTGTGGAGCGCGTTCACATCCAGCACTGAAGTTCGGACCCTGTGCTCACACTCATGGTGGGGGAAGCAGTCAATGGAGGACACCGCCCTCAAACAGACCACTATGGTTTCCAGACTACCAAAATTTGGCTCTCGTGCTACACCTGCTTCTGGACCCTTGACCAATGGCTCGACCCATAATGTTTCCTCTGGATGGGCTAAAGGAGTACCTGTAGGAAAGCAGAACGGCATAATTAGGGTCCCTGCCCCCATACCTATGAAGGGGAGGAAGGGGAGGGAGGATTGTGGAGAGACGGTTCCAGATTCTGGAGAAGAGGCTCGAGTAGTTCTCCGTTCTCAGCAGCAGCCACGCTCTGCAGGGCCTGTTAAGCAAATTAGGAAGCCCTCAGCTGCTCCAGTGGGTAAAACCCAACGTTCCATCCCCACTGTACCAAGTACCATTCCTAGGACTATTACTCAGCCTATAAAAACAAACCCACGCAATGCTGCCCCCAAACAGCCCTCACCCATCCAGCCGCTATGCAGCAAGGTCGGTGCGAATGTAGTCGCTCCTAGCCAGGGCTCTTCCTCATCTCCCCAGGGAAGTCTTCAGAGCAGCCTTTCTCACTCCAGTGACAGCCTCAAGTCCCTCTCTGTGGAGAACGTTGTGCGCTCTCAAAGCTTCTCCTATTTAAAGAGGCCTGCAGCTGCCACTAACCCACCTCTGACACGTTCCTTCTCATTTAACCGGGCAACAGAGCTAGCGAAAGAGCTGCCCAGGCCACTGTCACAGTCTCCGGTAGCCAGGTCTCCTGTCACTCAGACCTCCATGGTGTTAGATCGTGTAGCAAAACCTACAATAGCAGCATGTTCCATCTCCTTCATACCTCCCTCAACCTTGAAGAAATCTCTTCTGCCTAACTGCACTGATGGCAAGCCATCATCAATTAGCTATAAGCTAATGCGGCCATCGCTCATCAAGCAACCCCGCCCATTTATTCCGGTTAAAGTACAAGGGAAGATGGAATTTACAGAGAGGGGTGGAGATTCTCGAGAAAAAGCTACACCCATTTCTGAGCCATCCAGCAACACTCACAGTGCTGGAACTACTCCTGAGGAACCCTTTTCCACCAAGGAGGCAAATGACAGTCGGGTTCAATCTCTGGAGATCTTGGAGGACATGTCTTTATCGTCCACATCCTCTCTGGAGCGCAATGATGTGAGTGAAGAATACATGGATGACTTTGATGACTTGGGCAATGGAGGCGGAATTCTGCTCATGCCTGTTCATGAGGGGAAAAATGGCCAAATAGGGTTCTTCAAGGAGAATAACACTCTTGTTGGTCAGTGTCAAGAGGGGTCATCAATGACGAGTCTGCACAGCTTTGTGTCCGAGACAGTAGATTGGGCCGAGATTGGCCTCACAGGTAGCAGGGAGGTGGCTGATGCCTCACATCGCTGTGGGACTCGAGCACTGTCTACAGAGAGAGATTTACCGCATGGCTCCTCCCTGGAGCTCTCCCCTTCAGACAGCTCTGGAGGAACCTACATGTGGGACGAGGAGGTTCTGGAGCCGATTGGAGGGGCCTCACAACTCTGTGGGAGCTTTGACTCCAACCTTAACAGCATGGACATTCTCAATAACTTGGACAACTTGGACTCTTGTGATCTGGAGGAGGATGACCTCATGCTGGATGTGGACCTGCCTGAAGACGTCTCCCTCCACAGTGATGTTGATGTAGCGGCCCGTTATGATCTCTCAGACAGCAATTACTGGCCGTGGAGAAAGCAACAGCAGTACAGAGGGAACACGGAGCAGCTACACTACGAGGAACGAGACGGAGTTCTGCAGCCGTTTGATAACGGACACACGCTGTGTTTGAGCAGGAGAGGGTCAGGACAGTCGTCTCTGGATGAGTTGATGCTGAAGCACATGGCCCAGGACTGCTCGTCTGTCAGAGAACAGCTGTTTCATCTGAGGACACTGCtgcagATGGAAGAGGATGGATCAGTTGATGAAGCTGAGCAGTTAGTGTCCAGTCCATCTTCTGAAGAGCCCAGCTCTCAACAAGTGGACGAGCTGTTGAAGGAGGTGCAGAAGCTAAGAGAAGAGCTCCGAGGGAAAGACGTACTGATTTCGAAACTCACTCAGCAGCTGTCAGCTCCTGTAGAGGTGACACCGTGCCTCTGCCAGCAGGGGGAGCTGCAGAGACGAGAGCATCAGGACAAGAGCACTCAGACCCCATGGAGAGCGCAGAATCCTCAGATACTACAGCCTTCCCAGCCCTCGGCCAGCGAGCACAACAAATTGGCAAGACCATCACTCCAAGCCCTCTCAGAGGCCCCCAGTGACCATGTGGATGCCCAGCCTGGTGATGGTCCAGTGAAGCCCCAGTCCTGCACTGTAGTTTTACCCGTTTCTGCCACCAGTAATGCCACGCTTCCTTCCTCTGTGCCCGCGACTGCGCCCGCTGGTAGTGCCGCTGCTGCCTCTTTATCCTCCAGCACTCTGAGCTCAGATAATCTCATCCTCCTCCCAAACACCCGTCTCCGAATTGATGAGTCACACAGCCCCAGGGCTCATGTTAGTAACTACGTCCAGCTGAGGAGGACGAATCTACAGCCCGGTGACCTTCACACACTCAGCAGAGACAGGAAAGCTCCTGTGCTTATGAAACCCAGAGGAGCCGAGCAGGTCGGCTTAGGACGAGGATTGCGAGGTGCATCTGGTGCTCACCCGGGTTTCAGCGGTCCATCCAGGTCCAGACATCTGCCCCCTCCATCCCGTGGCCTGCCCTGCATCAGCTCAGCATCACAGTCCAGTCTAATTCCATCAACACACAGCTCAGGCATCAGAATGATCTCAGCTCATAGAGACGAGGAGATCAGCTCTGTCCGGGCTCAAGATCTGTCCAATGCCTATAACTCTCGCCTCCCTAAGCCAAAGAGCCATTAACCCTTTCCCTCTGCTCCGctgttcttctcctcctcctctacaGCTCTGCTCAGGGCATCAGGCTCCACACTCCATGGCTCCCCTCGGCCAGGTTTCCAGCTCTAAAAGCCTGCTGATCTCTGAGCTCGTATTTATCAAAAAGCACCTGATCTGCCCAGGCTCTATACTTAACACACGCAGTTAAGGGCAGATCTCAGTGTTATCAGTGCATTAGGAGTTCATCAAAAAACTACTGGcataaagtagaaaaaaaaattgagaatcACTCTAACATAGGGAGATCACAATTTAAAATCCCGCTGATGTGGCCAGGAGTCTAGAGAGTGTAATTAGCTGTGCtgtctgagtgggaggggcttTACTCTATCACCTGGCAATCACAATGACACTATCCAATCGTGAGCTCATgtagggcagatagcactttcaaGTGATGAAGCATGAGTAGCAGTTCGAAACGAGATAGTCTGAAAAattctaaaagaaaaagaaagcagccTACTCAGTTCCCACTGTCTGTACCAAGAGaaagctaaacacacactcacaagccTTGAGTAAAAATCCTATTTATTCAGTGTATTATATTTTGAAAGGCTATCGACAATCCCATTATTGCCTTTAAATCTTCACAATGCTAATAAATTAAACTGGAGTTAACATTTGACCTGAAAGCTCTATTCTGATTAGTGCAGAAAAGAAACAAGACAGTAATGACAGTCTATAAGAGCTTGATGTTTTCCACATTACTACACACTAAAAACTCCACTCAGCATCGTCGTAAACCTGCTAATGGATCGAACACTTGGTAGTTTGATGgtcagcttgttttttttttttttattaatgtaatagATATGCGCTGTGTGTGAAGGTCAGCCGCTGTTGGACACGTGTGTAAGTGTTGTGTAGAAGTCCATTCTGTCAGCTGCGTGAAATCATCCTGTGTTGCCCTTTAAAAAGAACAGCATACGTCTTCTACTGTGTTGATCAGATTGTTCCCCTGTCTCGGGTAGAGTGAGGCGGTGTGATCTGTTCCTGTAATAACTGACTGGTTAATCAGCGCAGTACTTTTCTTGTCCTCCTACAGCAACGTTCACTCTTTTTCAGGTTCGAGTGAGTGTGTTCACTCTCGGTTGCTTCATTATGTACTCAGTGGTGCACATGATCTACCCCAACATGTCCACCTTCTTCATCAAAACGAGAACGTTCCCCTGATCTGCAGTAGAGTTTATTCAGAATGGAAGGAGAGGAGAGCTGCTCTCAGATCAGCTTCAGAGTAGAGCAGAGTAGCTGCAGTAATGCTGTGGACCGAGTTTCCTGCCATTTTCCCTTCTTCCTAAAGATCCTCCCTCAGTGTGTCGTGTAGatagtgagtgagagtgagtgagtgagtgggtgggtggagtgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579296.1 lncRNA upstream 129006 8047 ~ 8515 (+) True LOC113537089
XR_004579155.1 lncRNA downstream 21504 243923 ~ 254748 (+) True LOC113535322
XR_003403586.2 lncRNA downstream 21504 243923 ~ 254748 (+) False LOC113535322
TU223262 lncRNA downstream 286611 509030 ~ 511976 (+) False G188605
TU223264 lncRNA downstream 286611 509030 ~ 511049 (+) False G188605
TU223261 lncRNA downstream 287001 509420 ~ 510163 (+) True G188605
XM_026928418.2 mRNA upstream 733 134237 ~ 136788 (+) True LOC113535195
XM_026928419.2 mRNA upstream 733 134237 ~ 136788 (+) False LOC113535195
XM_034309262.1 mRNA upstream 11682 121267 ~ 125839 (+) True LOC113535310
XM_034309254.1 mRNA upstream 31601 83710 ~ 105920 (+) True LOC113536986
XM_034309126.1 mRNA upstream 66364 14641 ~ 71157 (+) True LOC113536897
XM_034309343.1 mRNA downstream 51962 274381 ~ 275446 (+) True LOC117598554
XM_026928112.2 mRNA downstream 498632 721051 ~ 753040 (+) True btbd16
XM_034309248.1 mRNA downstream 498632 721051 ~ 753040 (+) False btbd16
XM_026928113.2 mRNA downstream 498632 721051 ~ 753040 (+) False btbd16
XM_034309259.1 mRNA downstream 539785 762204 ~ 784991 (+) True plekha1b
TU223925 other downstream 1440673 1663092 ~ 1665337 (+) False LOC117598477
TU224759 other downstream 2538274 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 2747706 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 2747706 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 3016025 3238444 ~ 3239216 (+) True G190028

Expression Profile