RNA id: XM_034309399.1


Basic Information

Item Value
RNA id XM_034309399.1
length 1206
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC113535036
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1846228 ~ 1851194 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGGAACCTGACGAAAATGGCTAAAAAAATggctcccaagtggtgcaacaaaaaaaaaagtgaaaatcatTGAGGCAAAATGGCATTTTGCTACAGAATCACTTCCACATGCACACTTTAGCCACTTTGCGTTTGTGCACAAACCCACACTGGAACTTCTCCATTCAGGGGAATACATGTGATATTCCCACATACAGAAACAGACTTAATGAGTGAGGTTTAAAACTGATGTAAATAAGTTTCATACATCCTTCCAGAACTGACAGGAATAACACAGTAACTGAAGAGATCAGGATGGAGATGAGATTTGACGAGGATACAAATTGGCCTCAGTTCTCAGAGCGACGGGAACAACAACTCAGGAGGAGGCACTACAAAGAGCCCTGTTACAGAGTGGCTGCAGTGGGTTTTGGCCTGCTGTGCGTCCTCCTGCTGGCTGCAGTCACAGTCCTCGCTACAAATAACACCCAGTTACAGATCAGTTACAACATCCCGAATGACAATTTTCAGACCAACTACAGCAACCTAGTAAAACTGATTGACCAATTACAGAAGGAGAATGCTGCACTTCAGAAGAAGCTGGCGGATCTAGCTAAACATGCCCAACTAGGATGGGTCTACTTCAGCTCCAGTCTTTACTTTATCTCGACGGAGAAGAAGAGCTGGACTGACAGCAGACAGGACTGCAGTAGGAAAGGAGCAGACCTCGTGATCATCAGCAGCAGAGAGGAACAGGAGTTCATCATTAAGCAGCTGGACGGAGATAAGGCTTGGATTGGTTTAAGTGACAGAAGCACAGAGAGGGTTTGGAAATGGGTGGATGGTACAGCGCTGACCACTGCGTACTGGGCTAAGGGAGAACCAAATGATGCAGGTAATGAAGAGGACTGTGCTGAGATTTggagttctgcagacagaaaggGCTGGAACGACGTGACCTGCTCTACAAAAGAGAGATGGATCTGTGAGAAACTGGATTTTCAGTGACTGTCAGCAGTCCAAAGTGTACCGAGACTCAAAATCTGCTCTTCAGCTCAGACACGAACGTCAACAACTTCAACGAGAGAAGCTTGTGAAATCCTGTATAAagcatgaatttaaaaaaaaaacgttttgaTCTTTTCCTTTCATCCCTCCATCGTGTTCAGTGTTTCTTTGTAATATAGTGATAGTGATCTGTCAATAAAGTATTGAGTCATTTGTAT

Function

GO: NA

KEGG:

id description
K10059 CLEC4E, MINCLE; C-type lectin domain family 4 member E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224019 lncRNA upstream 69796 1775605 ~ 1776432 (+) True G189245
XR_004579144.1 lncRNA upstream 180415 1663097 ~ 1665813 (+) True LOC117598477
TU223926 lncRNA upstream 180891 1567516 ~ 1665337 (+) False LOC117598477
TU223946 lncRNA upstream 234008 1609826 ~ 1612220 (+) True G189190
TU223911 lncRNA upstream 299646 1545798 ~ 1546582 (+) True G189170
TU224061 lncRNA downstream 12008 1863202 ~ 1863652 (+) True G189280
TU224082 lncRNA downstream 36456 1887650 ~ 1887870 (+) True G189293
XR_004579220.1 lncRNA downstream 72790 1923984 ~ 1925704 (+) True LOC117598584
TU224074 lncRNA downstream 72829 1924023 ~ 1925679 (+) False LOC117598584
TU224099 lncRNA downstream 88758 1939952 ~ 1940256 (+) False LOC117598558
XM_026928117.2 mRNA upstream 1479 1838763 ~ 1844749 (+) True LOC113535035
XM_034309396.1 mRNA upstream 131731 1709949 ~ 1714497 (+) True LOC117598580
XM_026927863.2 mRNA upstream 237331 1600541 ~ 1608897 (+) True klhl11
XM_034309349.1 mRNA upstream 243963 1579297 ~ 1602265 (+) True aclyb
XM_034309527.1 mRNA upstream 280465 1564045 ~ 1565763 (+) True LOC117598650
XM_034309398.1 mRNA downstream 24460 1875654 ~ 1882978 (+) False foxh1
XM_026928452.2 mRNA downstream 24461 1875655 ~ 1882978 (+) True foxh1
XM_026928621.2 mRNA downstream 54014 1905208 ~ 1919420 (+) True stat5b
XM_026928622.2 mRNA downstream 54014 1905208 ~ 1919420 (+) False stat5b
XM_034309388.1 mRNA downstream 75205 1926399 ~ 1934902 (+) False ghdc
TU223925 other upstream 180891 1663092 ~ 1665337 (+) False LOC117598477
XR_003403557.2 other upstream 1625860 137521 ~ 220368 (+) False ccser2b
TU224759 other downstream 909499 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 1118931 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 1118931 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 1387250 3238444 ~ 3239216 (+) True G190028
TU225191 other downstream 1550073 3401267 ~ 3405009 (+) True G190212

Expression Profile