RNA id: XM_026928143.2


Basic Information

Item Value
RNA id XM_026928143.2
length 2707
RNA type mRNA
GC content 0.49
exon number 8
gene id get4
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 858068 ~ 867809 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGATGAGCGGATTGGGTGTCGGCAGCTACGGCAGCTCGAAAGGGTCATTTGGGTGCCAGTGAGCCCGTAGCGCGAAGGGAACAATGATGTCGGAGCAGGAGGCTGTGAAGAGGAACCGCGGAGGAGTGCAGCGTGTGGAGGGGAAACTCCGCGCCAGTGTGGAGAGAGGAGACTACTACGAAGCCCATCAAATGTACCGGACCTTATTCTTTAGGTATACATCTCAGTCCAAGCATGCAGAAGCCCGGGAGCTGATGTACAACGGAGCGGTGCTTTTCTTTAGTTATAACCAGcaaAACAGCGCCGCGGATCTGTCCATGCTGGTGCTGGAGGCTTTGGAGAAGTCCGAGGCCAAGGTGGAAGAGGACATACTGGAGCAACTGGTCAAGCTGTTCAGCATGATGGATCCGAACTCTCCCGAGAGGGTGGCTTTTGTCTCGCGGGCGCTGAAGTGGTCGACGGGCGGCTCGGGGAAGCTCGGACACCCCAAATTACACCAGCTGCTGGCTGTCACGCTGTGGAAAGAGCAAAACTACAGCGAGTCCCGCTACCACTTCCTGCACTCCTCAGACGGCGAGGGCTGCGCTCAGATGCTGGTCGAGTACTCGGCCGCCCGCGGCTTCCGCAGCGAAGTCGACATGTTCGTGGCTCAGGCCGTCTTACAAGGGAAGCTGACAGTCTTTACAGTATTATGTGAACAGTATCAGCCGTCGCTGAAGAGGGACCCCATGTACAACGAGTACCTGGACAGAATAGGACAGCTGTTCTTCGGCGTTCCACCCAAACAGTCCTCATCGTACGGTGGCCTGCTAGGGAATCTGCTGAACAGTCTGATGGGGTCgggtgaggaagaggagggtgAGGAAGTTCGTGAGGACAGCAGCCCCATCGAGCTGGACTGAACATCGCACACCTCCAAACGCAACCTCTCAGTTAGAGAAAACGACACAGAACTGAATCAaactcaagttttttttttttttcttttgttttgtttttttcttttgaccaCATGTCCTGGAAAATgtagctgcagtttttgttttattttttatttctttgctcCTCTGTGTAGTTTTCAGAAGAGGTGATTGATGCAGCTTCTGGATTACTACTACACCACCcacaccaccactaccaccaccaccaccaccacctctcAACGAGAATAAACTAACGAATCAATAAACTGCCGTAAAATGGAAGAACATCTGAAGCGTAATCATGACAGCCCGCTTTACGTTCAGCCAGAACCGAACAcatcgttgttgttgttgttgttgttgtttttttgttaatgaatAGTGATGCATCGATACTGAGACGGGTCTCAGGTTTCAGCCTGATACTGTTCTCATTTTACTGACAGCAGCTGATGCTGTGTGACGTGAGccgagtgtgtgtcagtgtcgcAGTGATGAACAGACGACAGGAAACGACAGCGATTAACGATCAAAGCAAACTGTGAAAATATTAACTACTGCATCTTCCTCCAATACGAGTGATGAAACATCGTTATAGCGTTtaaacggtgtgtgtgtgtgtgtgtgtgtgtgtgatagaggaCGGGTGTTCGAATGCCGTGAATCGCGCACGCATAAAGATATTCACGAGCTTAGAGCAGTGACGCAAATGTGCCGAGAAACTGTCACGTGAGAGAGCGAGCAGTtcagttcagcgagcactgagacacgcccCCTTCCGTTCGACACTTCGAGGTGCAGTTAAGCTAAATAAAGTGTTCCGCGACATCCGTGATTAATACTAAAGGCCTGGTTTGTACCCGACACGTGACTTTCACACGCTCGCCTGCGTACGTCACGTACTTTATCTAGAGAAGTAAACGCGATTAGAGCCAGAACGTCCCCGTGCATCAGGTTTCCAAGCTGAACTGTAAAACGTTTTTAACGCACTGCGACGTTAAACACACAGACGAGCGCCGTTTCTCTGTCGTCACGGGCTGCGTCTCGGCTCAAAAACTCTGACCttgctttcaaaaatatttgCTAATCTGGAAAATCGGGAATTCTGGTACGCATAACAGCTTTTGGTCACTCAGAATGAGAcagttttaaaattgtaatcgtcTGAAATAGTAAAGGAGTGacgtgatttgagacacaaggctagtttgtttattcagcTGCGTACACAGTGTCACGTGGCGCTGTACTGCCCCCACTGGACGTCTCGGTATTGCACCACACAGACGTGTAGCGGTGATTTCTGTCGTTTCGGGGACGTGGCGCAGGATACACGCGGCGGCCATCTTGTGTAGATAAAAGCAAGCGGAATCATTTCGGTATCAGGATCAGTACTAGTGAGTACCGgtaccaaaaaaaaactctgtctagaaaaaaaaagtcatcgatgcatccctaattaataatatttataagatTAAAGTCTAAGAATTCTATTCAGAGCTAACACACGCTGAGAATCCTCCTcgcagtagtgtgtgtgaagacgTCCCACCTTCCAGAGaggtgtttgctgtgtgtgtttttacattcTGAACAAACTTCACCACTACTCCTGTTattgcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgctcgcatgtgtgtgagatgtcTGAGTGGGATGTCGAGATTTATTTAAGTTTGTTGTCCATAATCTGAAGCAGATGCTTTGACTTTTTGCAAGagctcaataaataaaaaggacaGGGGCGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223403 lncRNA upstream 23499 834103 ~ 834569 (+) True G188730
TU223194 lncRNA upstream 78520 725033 ~ 779548 (+) False plekha1b
TU223383 lncRNA upstream 116316 740426 ~ 741752 (+) True G188715
TU223359 lncRNA upstream 163599 692959 ~ 694469 (+) True G188694
TU223343 lncRNA upstream 223085 634400 ~ 634983 (+) True G188681
TU223423 lncRNA downstream 37657 905466 ~ 913373 (+) True G188744
TU223426 lncRNA downstream 54796 922605 ~ 922805 (+) True G188747
TU223428 lncRNA downstream 56476 924285 ~ 924490 (+) True G188749
TU223449 lncRNA downstream 104946 972755 ~ 973859 (+) False LOC113535146
TU223448 lncRNA downstream 106988 974797 ~ 975865 (+) True G188761
XM_034309230.1 mRNA upstream 1985 836051 ~ 856083 (+) True zgc:174164
XM_026927819.2 mRNA upstream 1985 836052 ~ 856083 (+) False zgc:174164
XM_026928163.2 mRNA upstream 34086 794438 ~ 823982 (+) True htra1b
XM_034309259.1 mRNA upstream 73077 762204 ~ 784991 (+) True plekha1b
XM_034309260.1 mRNA upstream 73077 762204 ~ 784991 (+) False plekha1b
XM_034309346.1 mRNA downstream 21367 889176 ~ 920532 (+) True LOC113535268
XM_026928328.2 mRNA downstream 89723 957532 ~ 974218 (+) False LOC113535146
XM_026928326.2 mRNA downstream 92656 960465 ~ 974218 (+) True LOC113535146
XM_026928329.2 mRNA downstream 96832 964641 ~ 974218 (+) False LOC113535146
XM_026928330.2 mRNA downstream 96880 964689 ~ 974218 (+) False LOC113535146
XR_003403557.2 other upstream 637700 137521 ~ 220368 (+) False ccser2b
TU223925 other downstream 795283 1663092 ~ 1665337 (+) False LOC117598477
TU224759 other downstream 1892884 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 2102316 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 2102316 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 2370635 3238444 ~ 3239216 (+) True G190028

Expression Profile