RNA id: XM_026928248.2


Basic Information

Item Value
RNA id XM_026928248.2
length 2226
RNA type mRNA
GC content 0.51
exon number 10
gene id fkbp10b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1055791 ~ 1065735 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCTCACTCCtctttccctcacacacacacacacacacacacacacgcgcgcactgGACGGAGCAGATGTGCAGTGTGACTTCAGcactttgtgtctgtctgtgtgtgtgtgtgttagcccgGTTCTTCCCGGTTGTTTAATCCGTGATGTCCCGCTCGAGGCTGATCCTGGGCGCGGTGCTCGCGCTGTGGGCGTGCGGCGCGTGCAGCCCGGGCCCGGTGGAGGACGTGCGCGTGGACCCGTACTCACGACCGGAGGAGTGCATCAGAGAGGTGAAGAGAGGAGATCTGGTGCGGTATCACTACAACGCCACGTTTACTGACGGCAAACAGTTTGACTCCAGttaTGACAGAGGCACGGCGTTCTTCGTAAAGGTCGGTGACGGACGTCAGATTGCCGGCGTGGAGAAAGGCATCgtgggaatgtgtgtgaacGAGCGCAGGAAGATCACGGTCCCACCACACCTGGCTTATGGCAGTCAGGgagcaggtgacACCATTCCTCCTGACTCGACTCTGGTGTTTGATCTCATCCTGCTCGACATCTTCAACATGGCCGATCGTGTAAAGACGCAGGTGATAAAGACGCCGCAGAACTGCACGCGCTCCGTCAAGAGGACCGATTTCGTCCGGTTTCACTTCAACGGAAGTCTGCTAGACGGCACGCAGTTTGACTCCAGttacgatcgctctcacacacaggacaatTTAATCGGAGACGGCTGGTTGATTAAAGGACTGGATGAAGGGCTGTTGGGGATGTGTGTGGGGGAAATCAGAAACTTCGTCATCCCTCCGTTCCTCGCCTTCGGAGAGAAAGGAtacgGGAAAGAGATCCCGCCTCACGCCACGGTGGTGTACGACATCCTGCTCGTGGACCTGCACAACCCTAAAGACGACATCAGCGTGGAGATCCAGGAAGTCCCCGAGCCCTGTACACGCAAATCCGTGAAGGGAGATTACATTCGCTATCACTACAACGGCACCTTCCTCAACGGAGCCGCCTTCGACAGCAGttacgaGCATAACAGTACGTACAACACGTACATCGGGCTGGGCTACGTGATCTCGGGCATGGATAAAGGGCTGCAGGGAGTGTGTATGGGCGAGAGGAGGAGGATCACCATGCCACCTCACCTCGCATACGGACAACAAGGAGCAGGTAAGGAAATCCCCGCCTCAGCCGTGCTGGTGTTCGATATTCACGTGATCGACTTCCACAACCCGGAAGACTCGGTGCAGGTGAACGTGACGTTCAGACCGGGGGTGTGTAACGAGACCAGCCAGGTTGATGACTTTATCCAGTATCACTACAACTGCACGCTGATGGACGGCACGCTGCTCTTCACATCGAGTGATTACAGTGTTCCTCAGGACGTGGTGTTAGGAGGAGATAAAGTGATCGATGGTCTGGATGAAGGTCTGAGGGGgatgtgtgtgggtgagagGAGGATCATCATCATCCCTCCACACCTGGGACacggagagagaggagcggGGAGTGTTCCAGGCAGCGCTGTGCTGCGTTTTGAGCTCGAGCTCGTCTCCCTAAAGAAAGGCGTTCCTGAAGGTTACCTGTTTGTTTGGCTGGATGAGACGCCCAAGGAGCTTTTCGAGACTCTGGACTTAAATCAGGATAAAGAAGTTCCACTGGAggagTTCTCAGAGTTCATCAAGCATCAAGTGGCAGAGGGTAAAGGTCGTCTGAAACCGGATCGGGATCCTGAAAGCGTCATCGGAGACATGTTTAAAAACCAGGACCGGAACGGAGACGGACGAATTACAGCCGACGAACTGAAACTCAAAGTGGAGGAAGATGCCGAGAAAGAAAAAGCTCGGCATGAAGAACTGTGAGAGAGTGTCAGATATAAATACAGCCAGAAAAttttattctcacacacacacacacacacacacacacacaaaaaaaccaatTCCTCCCGGAGATGAAAACCACTCAggattttatcttttttctgaaagcaaaaaaataagaaCAGCAACTAAAGTGTActtgcactgtttttttaaagttttatttttattttttaaacataaaaataatgtgGCCTTCATTCTCCATTCCATACACATGGAAATatatgttttagtttttttttatttggcattaaagtgtttgatgtgaactggGAAATGTTCCTTGTATAAACTATGCAGGTTCTTTTTTGCTGTAAAACGagttaaataaattacttttgtTGTAAA

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005528 FK506 binding molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K09575 FKBP9_10; FK506-binding protein 9/10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223461 lncRNA upstream 5171 1046500 ~ 1050620 (+) True G188770
TU223448 lncRNA upstream 79926 974797 ~ 975865 (+) True G188761
TU223449 lncRNA upstream 81932 972755 ~ 973859 (+) False LOC113535146
TU223428 lncRNA upstream 131301 924285 ~ 924490 (+) True G188749
TU223426 lncRNA upstream 132986 922605 ~ 922805 (+) True G188747
TU223911 lncRNA downstream 480063 1545798 ~ 1546582 (+) True G189170
TU223926 lncRNA downstream 501781 1567516 ~ 1665337 (+) False LOC117598477
TU223946 lncRNA downstream 544091 1609826 ~ 1612220 (+) True G189190
XR_004579144.1 lncRNA downstream 597362 1663097 ~ 1665813 (+) True LOC117598477
TU224019 lncRNA downstream 709870 1775605 ~ 1776432 (+) True G189245
XM_034309234.1 mRNA upstream 9579 1013929 ~ 1046212 (+) True adam11
XM_034309233.1 mRNA upstream 12113 1013929 ~ 1043678 (+) False adam11
XM_034309232.1 mRNA upstream 45956 998787 ~ 1009835 (+) False dbf4b
XM_034309231.1 mRNA upstream 45956 999243 ~ 1009835 (+) True dbf4b
XM_026928297.2 mRNA upstream 58988 981015 ~ 996803 (+) False LOC113535123
XM_034309239.1 mRNA downstream 14228 1079963 ~ 1111182 (+) False LOC113535337
XM_034309238.1 mRNA downstream 14677 1080412 ~ 1111182 (+) True LOC113535337
XM_034309246.1 mRNA downstream 64134 1129869 ~ 1176044 (+) True LOC113536883
XM_034309247.1 mRNA downstream 64134 1129869 ~ 1176044 (+) False LOC113536883
XM_034309253.1 mRNA downstream 118358 1184093 ~ 1203206 (+) True LOC117598515
XR_003403557.2 other upstream 835423 137521 ~ 220368 (+) False ccser2b
TU223925 other downstream 597357 1663092 ~ 1665337 (+) False LOC117598477
TU224759 other downstream 1694958 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 1904390 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 1904390 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 2172709 3238444 ~ 3239216 (+) True G190028

Expression Profile