RNA id: XM_026928277.2


Basic Information

Item Value
RNA id XM_026928277.2
length 2319
RNA type mRNA
GC content 0.49
exon number 12
gene id si:ch211-217a12.1
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1812567 ~ 1822814 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgttgacactgtagactccttctacaaatgttaaataaataaacctagTTATATACATGCAATTATTAATATAGAAATtcttacattaatataaacctgagatttgcaTCTGCACGACTCAACatcatccaaccaatcagaatccagaatttaacagTTCAGCATGCGGGTTAAGCAGTGTATTAGCTGATTTGATCGATAAAGCACTTGCTAATTAGCTTGCTAGGTACATATTGTCTCTAAACACTAGTGCTGTCTCCCTGCTCGAGTTTATCTGAAAATTTCAGTCGATCCTGAAGAAGCTTTAGCTGGTCGGAACATGTTCTCCGAACGTGTGGTTGTAGAAACTCTATACTCGACCCTCGAGGTGCATGACGTGTGCTGGccaattttaaaaatagccGAGACAGCATGTGCTTCCACTTGCTGCCAAATGTCAAGGAAGCTCAGCACATCATGGCTTCGGAGGTCTTGGACACGTCATAGCTGTTCCGTGTCTTGGCAAACGCCACACCACAACACTTTACAGCTCCTCTACACCTCTACATCAGCAGGAATTCAGCAGGAATTTCTGTCCTGCACAGATACAGGAGTCTTCACCAAGCGAAGGACGCCCTCACAAAGTGAACAGCCTGCCACTCAGGTGTTGTTTTTTGATGGTCCATAAGTGTCATTTCTTCATACTCTACTTCGTGTCAGAGGGACTCCAGCTGGAGAAACGATGACAGACCATGTTGTGGTTCCCGGTTTGAAGGTGTTGACGATGGACACCATGAACCCGAACGTGAAGAAGGTGGAGTACGCAGTGCGAGGGCCCATAGTGCAGAGAGCTGCGCAGATCGAAATGGAAATTCAACAGGGAGCAAAGAAGCCCTTCACCGAAGTGATTAGGGCGAATATCGGAGACTGCCACGCCATGGGCCAGAAACCCATCACCTTTTTCAGACAGgtgctGGCCATCTGCTCTTATCCCGATCTTCTGGATGACAACAGATTTCCAGAAGATGTGAAAAGTCGAGCACGACGGATCCTTCAGGCCTGCTGGGGAGGGAGTTTGGGCTCTTACAGCAGCAGTCAGGGGATTGAGCTTGTTCGACAGGATGTGGCGCGATTCATCGAGAAGCGAGACGGAGGGATCAAAAGCAATCCAGACAACATCTACCTCACTGCTGGAGCCAGCGATGGCATTGtgACGATGCTGAAGCTGCTGATCTCAGGTGAAGGATCTTCTCGGACCGGAGTGATGATCTCCATCCCTCAGTACCCGCTGTACTCTGCCGCTCTCGCTGAGCTCGCCGCTGTGCAGATTAATTATTATCTGGACGAGGAAACGTGCTGGAGTTTGGACATCCGAGAGCTGCGGCGTGCGCTGGAGGAGGCCAGGAAACACTGCACACCTCGAGTCCTGTGTATCATCAACCCCGGAAATCCAAccgGTCAGGTGCAGAGCCGACAGTGCATCGAGGACGTGATCCGATTCGCTGCCGAAGAAAATCTCTTTCTAATGGCAGACGAGGTCTATCAGGACAACGTGTACGCAGACGGCTGTGAGTTTCACTCGTTTAAGAAGGTCCTGTTTGAGATGGGTCCGGAGTACTCTGACCGAGTGGAGCTGGCCTCGTTTCATTCCACGTCCAAGTGCTACATGGGAGAGTGTGGCTTTCGGGCTGGCTACATGGAGGTGGTGAATTTGGACCCTGAGGTCAAAGTTCAGCTGACGAAGCTGGTCTCGGTGCGTCTGTGTCCTTCTGTAACTGGACAGGCTTTACTGGACCTGGTGGTGAATCCTCCTGAACCGCACGAACCCTCATACGACACCTTCGTTAAGGAGCGCTCACACACTCTGGCTGAATTAGCTAAGAAAGCTAGCATGACACACCAGATTCTCAATCAGGTGCCAGGGATCAAGTGTAATCCGGTCCAGGGAGCCATGTACACCTTCCCTCACATCCACATCCCGCCCAAAGCCGTCTCTGCAGCTCAGGAGAACGGTCAGGCTCCGGACATGTTCTACTGCATGAGACTGCTCGAGGAGATGGGCATCTGCCTCGTACCAGGAAGTGGATTTGGACAGAAAGACGGAACGTACCATTTCAGGATGACGATCCTTCCTCCGACCCAGAAACTGAAAATTGTCTTGGAGAAGATAAAGGAGTTTCATCAGAGTTTCACGCAGCAGTATTCATAAaggatacatttttaaatgttttccatttcaggagaaaaatgttttgtgttgttgATTTCTGCCCAGACATAACATGATGTAAAAATGTCTATTATACATATTTCAATCTGAATATAAGATTACATTTTCGA

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0008483 transaminase activity molecular_function

KEGG:

id description
K00814 GPT, ALT; alanine transaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224139 lncRNA downstream 42872 1766732 ~ 1769695 (-) False LOC113534879
TU224004 lncRNA downstream 104861 1707364 ~ 1707706 (-) True G189233
XR_004579218.1 lncRNA downstream 111134 1701050 ~ 1701433 (-) True LOC117598583
TU223957 lncRNA downstream 210318 1600442 ~ 1602249 (-) True G189200
TU223969 lncRNA downstream 223967 1586131 ~ 1588600 (-) True G189206
TU224154 lncRNA upstream 3887 1824282 ~ 1824948 (-) True G189354
TU224152 lncRNA upstream 4640 1825035 ~ 1826471 (-) False ppp1r16a
TU224153 lncRNA upstream 4749 1825144 ~ 1826471 (-) False ppp1r16a
TU224183 lncRNA upstream 67189 1887584 ~ 1887870 (-) True G189381
TU224188 lncRNA upstream 84467 1904862 ~ 1906435 (-) True G189385
XM_034309395.1 mRNA downstream 8453 1776804 ~ 1804114 (-) False LOC113535291
XM_034309394.1 mRNA downstream 8453 1776804 ~ 1804114 (-) False LOC113535291
XM_034309393.1 mRNA downstream 8453 1776804 ~ 1804114 (-) False LOC113535291
XM_034309392.1 mRNA downstream 8453 1776804 ~ 1804114 (-) True LOC113535291
XM_026927855.2 mRNA downstream 45018 1760834 ~ 1767549 (-) False LOC113534879
XM_026928116.2 mRNA upstream 4643 1825038 ~ 1869993 (-) True ppp1r16a
XM_034309383.1 mRNA upstream 68421 1888816 ~ 1903996 (-) False oplah
XM_034309382.1 mRNA upstream 68421 1888816 ~ 1902760 (-) False oplah
XM_034309381.1 mRNA upstream 68421 1888816 ~ 1902759 (-) True oplah
XM_026928444.2 mRNA upstream 121301 1941696 ~ 1982877 (-) True kcnh4b
TU223956 other downstream 241494 1568286 ~ 1571073 (-) True G189199
TU223922 other downstream 247307 1564890 ~ 1565260 (-) True G189180
XR_003404831.2 other upstream 374592 2194987 ~ 2210979 (-) False LOC113547489
TU224780 other upstream 972651 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other upstream 979681 2800076 ~ 2805906 (-) False LOC113547504
TU224811 other upstream 1031660 2852055 ~ 2855493 (-) True ndufa4
trnap-cgg_2 other upstream 3078379 4898774 ~ 4898845 (-) True trnap-cgg_2

Expression Profile