RNA id: XM_034309256.1


Basic Information

Item Value
RNA id XM_034309256.1
length 2683
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC113535123
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 976523 ~ 996803 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtaataaaatgtttttatatatgtttaaatgtcGATAATTATCAACAAAATACAGTCATTCTAGGGATTAGCTAATTAGATTAGCCACCTAGCTAGCTTCGTTAACTAGCTAGATATCTTAACGTCCTTTTGTGAGTGTCCCGAATCCGTGTTGAAGGCTCCCCGTGGCCAAGTGACCAGCTGATTTAGCGCGAGACGAGCAAGACGAACCGAGACGAGACCTCCTCTAAAGTGCAGAGTTGTTCCGGTTCCGAGACACCATGAGCTGGAGCTTCTTGACTCGCCTCTTAGAGGAAATTCACAACCACTCGACATTCGTGGGGAAAATCTGGCTCACGGTCCTCGTGGTGTTTCGGATCGTTCTCACTGCCGTGGGCGGCGAGTCCATCTACTACGACGAGCAGAGCAAGTTTGTGTGTAACTCGGGCCAGCCAGGCTGCGAGAACGTGTGCTACGACGCCTTTGCGCCGCTCTCGCACGTCCGCTTCTGGGTATTCCAGATCGTTCTGGTGGCCACGCCCTCTCTGATGTACCTTGGCTACGCCGTCAACAAGATTGCACGCTTGGAGGAAGGCAAAGAGGGCGTCGTTGGCTCTTCGGTGAAATTTTCCAAGAGCAGAAAGTTCTACCTGGGCAGACGTCAGAGCCGAGGTCTGGATGAACCCGAAGAAGATCAGGAGGAAGATCCGATGATTTACGACACGACCGAAACGGAAAGCCGAAGCGACAGCACGACTCTGGGTGCGACGGGAAGCGGTGCGAAAACGCGACACGACGGCAGACAGCGAATCCAGCGAGACGGACTGATGAGAGTTTACGTCCTCCAGCTGGTCGCTCGGTCCGCTTTAGAAATATGcttcctgattggtcagtacACGCTCTACGGTTTCGCTGTCCCGGCTCGGTACGCGTGCTCGAGCGAACCGTGTCCTCACGTCGTGGATTGTTTCGTTTCCCGTCCGACGGAGAAGACGATCTTTCTGCTCATCATGTACGCTGTCACCATGCTCTGCTTGCTGCTCAACGTCTGGGAGATGCTCCATCTCGGGCTGGGCACCATGTTCGATCTCCTGCTGGCCAGACAGCGGCGTTACGGCCCGGACGACGACCTCGCCGCGAGCGAGGAGAACGGACGAGGAGGATACGGAGGGTACGCGCTGTCCTGGACGTCTCCTTCAGCGCCGCCGGGCTACAACATCGCCGTGAAGGCGGAAACGGTGCCGTTTAAACAGAAGGAGGAGGCGACGGAGGAGGAGGCATCACCCAGGGCGCATCAGCAGCAGTACGGAAGCACAGAAGACAACTTCCTCCAGGTACAGAAAGCAGcggaaaagaacagaaaggcaAAGGAACAGCACGAGAAGAGAAAACGACGTGAACTTGAAAGAAACAAGCGAGACGGAAGCAGAGGGGACCGAGGGAGCAGCCGCAACAGCAGCAAGTCGGACGAGGGGAAGCCGTCTGTTTGGATTTGAGACGCGAAACAACGAGATCTGTTCATGTCAGTAAACTGACGAGATGTTACTgacgttttgttttttccagaaCAGCCACGAGAAAGCCATCTGTTTTACGGTTGAGGGTTTAGGTCTCGTGCTCATCTTAGTATCGGTAAACAATCAACGAGAGGAACTTAACGGTTGTATTTGAGACGTGAAGCGATTTAGAAACACGCTACGTTTTTGCAACAGCATGTAGCCTATTATTAGCATGTAGCGATTTGGGACACGGCAATCGGAAAGCTCTGACGAACCGCATCAGCGAATCAGACAACGGGAAATTCGGATTCGAGACGTAGCCGCGAACTAGGACGTCGTCGtttcatgaataaaaacaaacatgtgaaAAGCATCGATCACTGAGACACGTAGCAGAAGTCGGTACGATTAAACCGTCCTCCTCGTCTAAAAGCACTCGATTGCACATTCGCAAACTTCCTGAATCGGAAACAGCTGGATTTGCCAcagaggattgtgggtaatggCAATAAACCTGCATCCGCAGGCTTCATAAACACGGCTGGCACCGGTTTCTTGTCCCTTTAGGAAATTAAAGAAACGTGCACAAATGaggcagagttttttttttttttttgtcctttcagCTAATCTGGAGTAGCGCTAACGTTAGCATGCTGAAGGTTTCGTAAACAAGCGTTTCCCTTTTTGTCTCCGCTTCATCgtggaaaattaaataaacatgcagagaacttttatttttcttttctctttgctGTCTCAGAAgaaaagcagcacacacacactgctagcaTCAGCTCTGTGTTATTGGTTCTTTCCGTtgaaatttaaagaaatatgCGGAGAgaggaggtgttttttttttattcgtctGTTTGTTTCTGGATGTCGGACATGAAAGAGATTGAAAGTTTCCTTTGAGCTAATCCAGAGCACAATCACAGCAAGATCAGAAGCAGAACTGAACCGAGACGACGGTTAGCGTCTGTTTCTCGTTGaggttatttttgtttggtgCTGCTATTCCGTGCCTgatatttctttccttctttcttctgttGTTCTTGCTGTTCTTGTTGTCCAGCCCTGTTTCTCCACTCGATCGAGTTATAGCATTATTACCCAGAATGCTTTTCTGCAGTCTGCTTTTCAAGATGGAGGATGAATCAACATAAACAGgagcaataaaatatttcatattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223448 lncRNA upstream 5851 974797 ~ 975865 (+) True G188761
TU223449 lncRNA upstream 7857 972755 ~ 973859 (+) False LOC113535146
TU223428 lncRNA upstream 57226 924285 ~ 924490 (+) True G188749
TU223426 lncRNA upstream 58911 922605 ~ 922805 (+) True G188747
TU223423 lncRNA upstream 68343 905466 ~ 913373 (+) True G188744
TU223461 lncRNA downstream 49697 1046500 ~ 1050620 (+) True G188770
TU223911 lncRNA downstream 548995 1545798 ~ 1546582 (+) True G189170
TU223926 lncRNA downstream 570713 1567516 ~ 1665337 (+) False LOC117598477
TU223946 lncRNA downstream 613023 1609826 ~ 1612220 (+) True G189190
XR_004579144.1 lncRNA downstream 666294 1663097 ~ 1665813 (+) True LOC117598477
XM_026928328.2 mRNA upstream 7498 957532 ~ 974218 (+) False LOC113535146
XM_034309232.1 mRNA downstream 1984 998787 ~ 1009835 (+) False dbf4b
XM_034309231.1 mRNA downstream 2440 999243 ~ 1009835 (+) True dbf4b
XM_034309234.1 mRNA downstream 17126 1013929 ~ 1046212 (+) True adam11
XM_034309233.1 mRNA downstream 17126 1013929 ~ 1043678 (+) False adam11
XM_026928248.2 mRNA downstream 58988 1055791 ~ 1065735 (+) True fkbp10b
XR_003403557.2 other upstream 761348 137521 ~ 220368 (+) False ccser2b
TU223925 other downstream 666289 1663092 ~ 1665337 (+) False LOC117598477
TU224759 other downstream 1763890 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 1973322 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 1973322 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 2241641 3238444 ~ 3239216 (+) True G190028

Expression Profile