RNA id: XM_026928418.2


Basic Information

Item Value
RNA id XM_026928418.2
length 1159
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC113535195
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 134237 ~ 136788 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGAATAAAGGCTTGTTAAAGTTAATTTTTCCAATGGaaaccaaatataaatacagctgtgtagagaaaggagaaaggaaagaggaaagaatggaaaaagagaACAGACGAGAGAAAGCAGTTGCTGCAGTGGCCGCTTTTTACCGAGGGTTCGATCCTGAAGCGTACCTGAAGTACAATTACACACCACCACGAGCGGACTTCAGCCGAAGTGACAGCATCGTACCATGGAAGCTAAACTGCCTTCATAAAGCTTTCAGTGAagATGCCATTAAAGGAGACATTCTGGTGGATGTTGGTTCTGGTCCCACTCTATATCAGGTGATGAGCGGCTGTGAGCATTTTAATCGAGTCATATTATCTGATTTTTTGGAAGTGAATCGgaatgaattaaacaaatggCTCAAGGATGGACGGAGCAACTTTGATTGGACCCCTTACCTGAAACATGTGTGTGAGCTGGAGGGACGTAGTTCCTCCGCATGGCAAGAGAAAGCAGAGAGGCTTCGTTCAGTGGTGACAGATATTTTTCCTGTTAACGTTCACCACCCGTTCCCATTCCCACCCGGATCTTTGCCTGCTTCCGGTGCTGACTGCCTCGTGTCCTCGTTCTGCCTTGAAAGTGTGAGTCCTGACGTTTCCTCGTTCACTCACGCACTACGCAACCTGTCCAGCCTCCTGCGTAATGGTGGTCACCTCCTGCTCATTGGAGCTCTGGGGGAGAGCTTTTACATGGCAGCTCCTGATGTTCGGATCCCTGTCGTACCACTGGATGAGGCTCAGGTCTGTGCAAGTCTGAGCGCCAGCGGCTTCGATCTCCTGCAGCTCAGTGTGTATCGATTAACACCAGACATGCTGGTCGGAGTGGACGACGTCAAAGGCGTGTTCTTCGCTAAAGCAAGGAAACCATAAAATAAGTATCTATAAATAAGCTTTGATCAAAGAAACAagttattttatgtaaaattcctgggaaataaataaacttaaccTTTTATTTGAAGTGTCTGATCTAAACAAAACCAGAAAATTGTAAAATCtgcattcagtacattcagtaATGCAGATTTGATCGAAGAAGTTATTTTTTGTACATTGGGTTTCTGAAATTGAAAGTTATTTCTGTGACAGTGAATAAATTTAACCTTTTacctaaaa

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K00553 PNMT; phenylethanolamine N-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579296.1 lncRNA upstream 125722 8047 ~ 8515 (+) True LOC113537089
TU223110 lncRNA downstream 20724 157512 ~ 182875 (+) True G188466
XR_004579155.1 lncRNA downstream 107135 243923 ~ 254748 (+) True LOC113535322
XR_003403586.2 lncRNA downstream 107135 243923 ~ 254748 (+) False LOC113535322
TU223262 lncRNA downstream 372242 509030 ~ 511976 (+) False G188605
TU223264 lncRNA downstream 372242 509030 ~ 511049 (+) False G188605
XM_034309262.1 mRNA upstream 8398 121267 ~ 125839 (+) True LOC113535310
XM_034309254.1 mRNA upstream 28317 83710 ~ 105920 (+) True LOC113536986
XM_034309126.1 mRNA upstream 63080 14641 ~ 71157 (+) True LOC113536897
XM_026928106.2 mRNA downstream 733 137521 ~ 222419 (+) True ccser2b
XM_026928107.2 mRNA downstream 733 137521 ~ 220557 (+) False ccser2b
XM_026928108.2 mRNA downstream 733 137521 ~ 220535 (+) False ccser2b
XM_026928597.2 mRNA downstream 3071 139859 ~ 151454 (+) True si:ch211-207i20.2
XM_026928598.2 mRNA downstream 3072 139860 ~ 151451 (+) False si:ch211-207i20.2
XR_003403557.2 other downstream 733 137521 ~ 220368 (+) False ccser2b
TU223925 other downstream 1526304 1663092 ~ 1665337 (+) False LOC117598477
TU224759 other downstream 2623905 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 2833337 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 2833337 2970125 ~ 3021609 (+) False LOC113547538

Expression Profile