Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034309398.1 |
| length | 3035 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 4 |
| gene id | foxh1 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 1875654 ~ 1882978 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0007179 | transforming growth factor beta receptor signaling pathway | biological_process |
| GO:0060070 | canonical Wnt signaling pathway | biological_process |
| GO:0001706 | endoderm formation | biological_process |
| GO:0042074 | cell migration involved in gastrulation | biological_process |
| GO:2000223 | regulation of BMP signaling pathway involved in heart jogging | biological_process |
| GO:0010159 | specification of animal organ position | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0035054 | embryonic heart tube anterior/posterior pattern specification | biological_process |
| GO:0060971 | embryonic heart tube left/right pattern formation | biological_process |
| GO:0001568 | blood vessel development | biological_process |
| GO:0009953 | dorsal/ventral pattern formation | biological_process |
| GO:0048327 | axial mesodermal cell fate specification | biological_process |
| GO:0014028 | notochord formation | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0048382 | mesendoderm development | biological_process |
| GO:0032525 | somite rostral/caudal axis specification | biological_process |
| GO:0051090 | regulation of DNA-binding transcription factor activity | biological_process |
| GO:0001947 | heart looping | biological_process |
| GO:0021501 | prechordal plate formation | biological_process |
| GO:0021508 | floor plate formation | biological_process |
| GO:0060063 | Spemann organizer formation at the embryonic shield | biological_process |
| GO:0032444 | activin responsive factor complex | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0008134 | transcription factor binding | molecular_function |
| GO:0003690 | double-stranded DNA binding | molecular_function |
| GO:0019904 | protein domain specific binding | molecular_function |
| GO:0008301 | DNA binding, bending | molecular_function |
| GO:0070412 | R-SMAD binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU224061 | lncRNA | upstream | 12002 | 1863202 ~ 1863652 (+) | True | G189280 |
| TU224019 | lncRNA | upstream | 99222 | 1775605 ~ 1776432 (+) | True | G189245 |
| XR_004579144.1 | lncRNA | upstream | 209841 | 1663097 ~ 1665813 (+) | True | LOC117598477 |
| TU223926 | lncRNA | upstream | 210317 | 1567516 ~ 1665337 (+) | False | LOC117598477 |
| TU223946 | lncRNA | upstream | 263434 | 1609826 ~ 1612220 (+) | True | G189190 |
| TU224082 | lncRNA | downstream | 4672 | 1887650 ~ 1887870 (+) | True | G189293 |
| XR_004579220.1 | lncRNA | downstream | 41006 | 1923984 ~ 1925704 (+) | True | LOC117598584 |
| TU224074 | lncRNA | downstream | 41045 | 1924023 ~ 1925679 (+) | False | LOC117598584 |
| TU224099 | lncRNA | downstream | 56974 | 1939952 ~ 1940256 (+) | False | LOC117598558 |
| TU224296 | lncRNA | downstream | 260174 | 2143152 ~ 2145756 (+) | True | G189477 |
| XM_034309399.1 | mRNA | upstream | 24460 | 1846228 ~ 1851194 (+) | True | LOC113535036 |
| XM_026928118.2 | mRNA | upstream | 24460 | 1847621 ~ 1851194 (+) | False | LOC113535036 |
| XM_026928117.2 | mRNA | upstream | 30905 | 1838763 ~ 1844749 (+) | True | LOC113535035 |
| XM_034309396.1 | mRNA | upstream | 161157 | 1709949 ~ 1714497 (+) | True | LOC117598580 |
| XM_026927863.2 | mRNA | upstream | 266757 | 1600541 ~ 1608897 (+) | True | klhl11 |
| XM_026928621.2 | mRNA | downstream | 22230 | 1905208 ~ 1919420 (+) | True | stat5b |
| XM_026928622.2 | mRNA | downstream | 22230 | 1905208 ~ 1919420 (+) | False | stat5b |
| XM_034309388.1 | mRNA | downstream | 43421 | 1926399 ~ 1934902 (+) | False | ghdc |
| XM_034309387.1 | mRNA | downstream | 43428 | 1926406 ~ 1935741 (+) | True | ghdc |
| XM_034309350.1 | mRNA | downstream | 54709 | 1937687 ~ 1952224 (+) | True | LOC117598558 |
| TU223925 | other | upstream | 210317 | 1663092 ~ 1665337 (+) | False | LOC117598477 |
| XR_003403557.2 | other | upstream | 1655286 | 137521 ~ 220368 (+) | False | ccser2b |
| TU224759 | other | downstream | 877715 | 2760693 ~ 2761010 (+) | True | G189864 |
| TU224820 | other | downstream | 1087147 | 2970125 ~ 2989928 (+) | False | LOC113547538 |
| TU224822 | other | downstream | 1087147 | 2970125 ~ 3021609 (+) | False | LOC113547538 |
| TU224959 | other | downstream | 1355466 | 3238444 ~ 3239216 (+) | True | G190028 |
| TU225191 | other | downstream | 1518289 | 3401267 ~ 3405009 (+) | True | G190212 |
