RNA id: XM_026928539.2


Basic Information

Item Value
RNA id XM_026928539.2
length 864
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC113535294
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1488171 ~ 1492211 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGAGACTGCTGTAATGAGTTGCTGTTACCTGCTGCTGTCGGTGGTCATCTGTAACGgGTTCCATCTCCACGGTCCCTCTGATCCTCTCATTGCCCAGCTGGGAGGCTCAGTGATGCTGCCCTGCTTTGTAGAAACTCCTCTACCAATAGAAGAACTGGAAGTGGAGTGGAAAAGAAATGACTCTGAAACTCTAGTGCACTTGTGGCAGGAGGGAGAGAGTCGACCAGAGTCTCAGAACCAGCGTTATCATGAAAGAGCTCATTTCTTCACTGAGGAGATCGCCCATGGaaacttctctctcttccttacAAACGTGACCCGTGAAGATGCAGGAGTTTATAAGTGTGCTGTTTACACAAACCTGGACTCTGATGAAACTCTGATTGAAATAAAGGAGATTGAGCGCTTGATCGTGTCTGGAGGCCACGTCATATCTGCTTATGTCGGTGAAGATGTCACTCTGAATTGCTCTGTAGACTCAAATATCCCACCGGAAAATATAGAAGATGTGTCATGGAAGAAAATGGATGAAGATATCTTAGTGCTGCTTTATCAGGAGAATGAGGTCCAGACAGACTCGTCCcatgagagatacagagacagagtcGAGTTCTTCAGTGCTGAAGAAAGGAGCAAAGGAAACTTCTCATTGAGACTGAAGAGTGTTCGAACTGAGGACAAAGGGCTGTATATATGTTTAGCATTCTCTGGGGCATTATCAGCTAACACAACTGTGGAAGTGCAGCAGCTGGGTAAGTTTTTTATGcacaaaacatgtaaaaatgtagCAGAGCTGAGTGCTTTAATAAGTCAGAAGTGGATTATCAATGCTAAAATCATGTGGGGTGCACTGCCCTTatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223461 lncRNA upstream 437551 1046500 ~ 1050620 (+) True G188770
TU223448 lncRNA upstream 512306 974797 ~ 975865 (+) True G188761
TU223449 lncRNA upstream 514312 972755 ~ 973859 (+) False LOC113535146
TU223428 lncRNA upstream 563681 924285 ~ 924490 (+) True G188749
TU223426 lncRNA upstream 565366 922605 ~ 922805 (+) True G188747
TU223911 lncRNA downstream 53587 1545798 ~ 1546582 (+) True G189170
TU223926 lncRNA downstream 75305 1567516 ~ 1665337 (+) False LOC117598477
TU223946 lncRNA downstream 117615 1609826 ~ 1612220 (+) True G189190
XR_004579144.1 lncRNA downstream 170886 1663097 ~ 1665813 (+) True LOC117598477
TU224019 lncRNA downstream 283394 1775605 ~ 1776432 (+) True G189245
XM_034309240.1 mRNA upstream 32651 1404303 ~ 1455520 (+) True LOC113535212
XM_034309241.1 mRNA upstream 34195 1404288 ~ 1453976 (+) False LOC113535212
XM_034309243.1 mRNA upstream 34195 1404303 ~ 1453976 (+) False LOC113535212
XM_034309242.1 mRNA upstream 34195 1404303 ~ 1453976 (+) False LOC113535212
XM_034309245.1 mRNA upstream 34195 1404303 ~ 1453976 (+) False LOC113535212
XM_034309527.1 mRNA downstream 71834 1564045 ~ 1565763 (+) True LOC117598650
XM_034309349.1 mRNA downstream 87086 1579297 ~ 1602265 (+) True aclyb
XM_026927863.2 mRNA downstream 108330 1600541 ~ 1608897 (+) True klhl11
XM_034309396.1 mRNA downstream 217738 1709949 ~ 1714497 (+) True LOC117598580
XM_026928117.2 mRNA downstream 346552 1838763 ~ 1844749 (+) True LOC113535035
XR_003403557.2 other upstream 1267803 137521 ~ 220368 (+) False ccser2b
TU223925 other downstream 170881 1663092 ~ 1665337 (+) False LOC117598477
TU224759 other downstream 1268482 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 1477914 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 1477914 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 1746233 3238444 ~ 3239216 (+) True G190028

Expression Profile