RNA id: XM_026928609.2


Basic Information

Item Value
RNA id XM_026928609.2
length 3110
RNA type mRNA
GC content 0.50
exon number 14
gene id LOC113535349
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2104325 ~ 2117109 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCGACTCCGTAGGGCACTACGTAGAGAATAAGTGGAAGTGAAGTGATGCAGTGAGTCATTAGGGACGATGCAGGAGGTCCTGTTCACCATCAAGTGACCTTtaagaggagagaggaagaacacagagagagaaacggaAGGTAACTGGGAGAGTAGTGGATGAAGGACGACTAACGAGTGAACGAGTGGAGTGAGAGATTTGTCTGCCCTGCCATGGCACGCTGGTTCCTGAAGCGAAGTGCGCTCTTCAGCACCATGATCACGGTTATGAGCTTAGTGACTTTGTCTCAGGGGGACGCAGGGGATGAGGGGACGAGTGTGAGACCcctgaggagagagaaaagaggatgGGTGTGGAATCAGTTCTTTGTGCTGGAGGAGTATGCTGAGGACAAACCACTCTACGTCGGAAAGcttcaCTCAGATTTGGATAAAGGAGATGGATCTGTTAAATATATTCTTTCAGGAGAAGGTGCAGGAACCACGTTCACACTGGATGACAGCACTGgtgatATCCACGCAGTACAGAGGCTGGACCGTGAGATGAAAGAGCACTACGTCCTGCGTGCTCAGGCCACTCATCGCCACACAGGCCGCGCCCTCGAACCCGAGTCCCGCTTCATAGTGAAGATCCAGGATATTAATGACAACGAGCCCAAGTTCCTGGACGGACCCTACCAGGCCACCGTACCTGAGATGTCACCTGTCGGTACGTCTGTGATTCGGGTGACGGCGACGGATGCTGATGACCCGTCATACGGTAACAGCGCTCGAGTGGTGTACAGCGTTGTGAAGGGGCAGCCGTATTTCTCTGTGGACCGACACACAGGTGAGGTGCGCGTGTCATTGCCTGATATGGATCGAGAGGTCAAGGGTCAATACGAGGTCGTGATTCAGGCTAAAGACATGGCGGGTCAGCTGGGAGGTTTGGCAGGAACGACGACGGTCAACGTTACTCTGAGCGACGTCAACGACAATCCTCCCCACTTCACTCAGAAGCTGTATCAGATGAGCATCCCGGAATCCGCTCCCATTGGTTCTGTAGTGGGTCACATCGAGGCTCAAGATCACGATTTAGGTATCAATGCAGAAATGCGTTACAGAGTGATCGATGGGGATGGACGAGATGCGTTCGACATCAGCGCCGACTCCACCAACATGTATGGGGTCATCACTGTCAAACAGcGTCTGGACTTTGAGACGAAGCGTAGCTACACTCTGAAGGTGGAGGCCGCTAACACACACATCGACAAGCGTTTCTCTGCTAACGGGCCATTTAGCGACATCACCACGGTGCAGTTAAGCATAGAGGACGTGGATGAGCCGCCGCAGTTCAGCTCCACGCTTTATTACGCCGAGGTTCGTGAAGATGCCGAAATCGGCACGGTTCTGATCACCATCTCAGCCCGAGACCCCGACGCCGCTAACGACTCCATACGgtaTATGATTGATCGTGTCAGTGATCCTGATCAGTATTTCTCAGTGGGCGTGTCCAGTGGTTCTCTAATGACTGTCCTTCCTCTGGACAGAGAGGAAATCAGCTGGCATAATCTCATAGTAGCCATGGAGACAAaTAACCCACTGAAGACAGCGAGTGTATCTGTGGCTATAAGAGTTCTAGACATCAATGATAATCCACCATCAATAACACATCATCACGAAGCTTTCCTGTGTGACGACGCGAGAGCAGGACAGcTGGTCCAATCAATAAGAGCCATAGATGCAGACGAGCCAATAGGAGGACAGCGTTTCCGTTACACGCTTCCTCCTGAAGCACAGAATAATCCCAACTTCACCCTCACAGATAACCACGATAACTCAGCGAGGGTGCTGACCCGGCGGAGTGGCTGGGTATCTCCGAGTGTGTACCATCTTCCCATCACCGTGTCTGATGGAGGAGAGCCGGTCCAGTCCAGTACACACACCCTGACCAtccgagtgtgtgagtgtgacgCAGACGGGGATGTGTCATCCTGCCGTAACGCTGAACCTCACACACTCCCAGCTAACCTGAGTACAGCAGCACTAACCACCATGCTCACCTGTGGCTCCATCGTGCTTGTGATGCTAGTGCTCCTGCTGTTCCTAAGCAGCGGCACTAAAAAACCTTTCCCCAGCGACGAGGAAGAAAACGTGCGTGAAAACATTGTCCACTACGATGATGAAGGCGGCGGGGAGGAAGACACGGCGGCGTtcgacatcaccaaactgtggaAGACGCACACGGAGCCACTAAGCTACGCTGAACTGGTGCTTCATGGCAGTAAACGACGACACGTTGACGGTAAGGATGTAAAACCAAACAGCGTTAAGCTACGACAGGAAAAGCAGCCTGAGATCCAGAGCCTGTCGTGCTACGTGTCTCAGACGGACGCTAATACGTCCGGGACTAACGCTAACGGCCGTAATGTGTACGGCTACATGCTGGCCAAGCTCTGCCAGGTGGATCTGGATTCGGAAGCGCCTCCGTATGATTCGCTGCAGACGTACGCCTACGAAGGCGAGGGTTCCGTCGCTGAGTCGCTCAGCTCGCTGCAGTCTAACGACGACAATGAGCTCGATTACGATTATTTAGACGAGTGGGGGCCGCGGTTTCGCACCCTCGCAGAGCTGTATGGCACGAGCGCGAGTACTGTTTAGCGGAAGTGTGCAGAAGCatgctgttgccatggagataCAGCGAATAGTAACAATAATGAGATTCAGAAACAATGACACATCTTTAACATTGTTTATGGATTCAGTACAGATTTAATCGATTTATTGATTACTTATATAATGATTCAGTTGACCATGAAATCTCAGATTTGACCATCATGTGACTCTATTATGATTCTTTAGACTCAACTTAAATAATTCAGTAGATCATTACATTTAACACTTCACCAGTATTTGATTTGGATTCATTTGGAAGCAGTTCAGTAAATCATGAAATCTCAAACTTCACccttaattcaattaaattaggATTCATTTGGAAATTATACCCGAATTCTCAAACTTCACTTGACTCAGTAAAATGACTCAGAAAACGATTCACTGCATTGTTAAATCACAATTCTGATTTTGATTCACTtggaaatgattcatttaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06807 CDH20; cadherin 20, type 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224099 lncRNA upstream 164069 1939952 ~ 1940256 (+) False LOC117598558
XR_004579220.1 lncRNA upstream 178621 1923984 ~ 1925704 (+) True LOC117598584
TU224074 lncRNA upstream 178646 1924023 ~ 1925679 (+) False LOC117598584
TU224082 lncRNA upstream 216455 1887650 ~ 1887870 (+) True G189293
TU224061 lncRNA upstream 240673 1863202 ~ 1863652 (+) True G189280
TU224296 lncRNA downstream 26043 2143152 ~ 2145756 (+) True G189477
TU224386 lncRNA downstream 177977 2295086 ~ 2295305 (+) True G189555
TU224394 lncRNA downstream 191117 2308226 ~ 2309418 (+) True G189563
TU224401 lncRNA downstream 200209 2317318 ~ 2318307 (+) True G189570
TU224528 lncRNA downstream 407947 2525056 ~ 2528820 (+) True pyyb
XM_034309401.1 mRNA upstream 54967 1992417 ~ 2049358 (+) True drosha
XM_026928572.2 mRNA upstream 112935 1986520 ~ 1991390 (+) True LOC113535328
XM_034309350.1 mRNA upstream 152101 1937687 ~ 1952224 (+) True LOC117598558
XM_034309387.1 mRNA upstream 168584 1926406 ~ 1935741 (+) True ghdc
XM_034309388.1 mRNA upstream 169423 1926399 ~ 1934902 (+) False ghdc
XM_026928136.2 mRNA downstream 18070 2135179 ~ 2142952 (+) True kbtbd2
XM_026928137.2 mRNA downstream 18070 2135179 ~ 2142952 (+) False kbtbd2
XM_034309389.1 mRNA downstream 30787 2147896 ~ 2162573 (+) True avl9
XM_034309390.1 mRNA downstream 30787 2147896 ~ 2162573 (+) False avl9
XM_034309402.1 mRNA downstream 46065 2163174 ~ 2165781 (+) True lsm5
TU223925 other upstream 438988 1663092 ~ 1665337 (+) False LOC117598477
XR_003403557.2 other upstream 1883957 137521 ~ 220368 (+) False ccser2b
TU224759 other downstream 643584 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 853016 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 853016 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 1121335 3238444 ~ 3239216 (+) True G190028
TU225191 other downstream 1284158 3401267 ~ 3405009 (+) True G190212

Expression Profile