RNA id: XM_026934959.2


Basic Information

Item Value
RNA id XM_026934959.2
length 4600
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC113539277
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3815947 ~ 3830814 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAAACAGTCTGGAATCACTGAGTAAAGCTGAGTAAGTCTACAGAGGGTTCATAACGTCGTTCATTGTTTCATGTCAAACATTGTTTGGTTCCATcatgaccagaataaagcatttactgaagatgaatgaatgaataaagcgAGTTACAGACGATTCTCTCAGGGTAGACCGCAGACTTGGATTTGTTTAATTCTATTTGGACCCTTCCAAAATGGCGGACACGTTGACGTATTTAGTAGCTAGCAACAGCGGCTAAAGCGGAACCTACAGTTTTCTACGGAAATGCGGAACATCTCACCATTACTAAATTATTTTGGGTGTTAAACAACCTATAAACAGCAGGGTCAACAGAGTAGTGGGCTAAAGTTGGACCGGGAGAGTAGTGAGGGTGAAAGCGCTCTCAGGATGGTATAAGCTACACGGCTTTATTGATTGGGCGCGTGAGAGCAGAGCGCCGCTGCACGGCTGTAAACAAGCCCAGACCCCAGCGCTGCACAGACACCGGCCGCGTGACCGGAGGTCAACACCGCTTCTCCATTCAGAGCGTCACTAAACTCACTCCAACAACAAACCCAGAGCAGGAGCAGAGTGAAAGGGCGGCACACAGGCCGAGTTTAAACTGGCTGCAGGACAACAGCCGCGGAAAGCTCCAGGCCGGGCCGGTGAATGACCGCCGCTCACAGGGCCCTTTAACGCAGAACAACTCCATGAAAAGCGACTCGGCGTTAAAGGACAACAAAGGAGCAGGTCTAAAGAGAAGACCTCCCCGGATCTCTGCACTGCCGTCGGTCAGTGAGTGAGTTAAAGGCCGGGCTCGATGGCGTTACAGCTGCGGAGGACCGCGCGGCTGCGGCTGCTGCTCCGCGGCGCTGCTCTCTCTCCCCGCAGGGGCTGTGCGGGACTGTCCCCCGCCTCCAGACTGCGCGTCCTGCTCGACATGGACGGCGTTATTGCGGATTTTGAGGGgggatttttaaagaaatatagaCAGAGATACCCGAATGATCCGTACATCAGCCTGGAGGAGCGCAGAGGGTTTTGGGTGTCGACTCAGTACGGAGAGCTGAGAGGAGacctgtgtGATAAAGCCATAAGCATTTGGGAGTCCAAGAACTTTTTCATGGAGCTCGAACCTATACCAGGAAGTGTGGAGGCTGTGAAGGAGATGGCCAAGATGAAGAATACAGATGTCTTCATTTGCACCAGTCCAATTAAACACTATGCCCATTGTCCATACGAAAAGtatgCATGGGTAGAGAGGCATCTGGGCCCTGACTTCCTGGAGAAGGTCATTTTGACCAGAGACAAGACAATAGTGTGGAGCCCAATCCATCCTGGGAACACATTCTTTTCACTGCCTGCCACAACAAGCACCTGCCTGCCAGCACCACCCAGAGGCGCCTCCTCTCCTGGGCTGATGACTGGAGGGGCATCCTGGAGGGCAAGCGCTAGTGAGAGCCTGGTGTACCTCCTCATGTCCTCACCACATCACCACTGGTCAACCTCATCCTCAGTGGACCAGCAGAAATAACATGGAAGCTATCAGTGGTGTAAGAAATCACTGCACTGTAACACTGTTATTCTCTTTTTGGTCCAAATTTAAAGCTTGATACACTGCATGACGAGAAGCCATTTTTATAAGTAAGGGACATATAAAAGAGGAGACAAGCCTGAGTcagttcatgaaaaaaaaaaactgagaaagaTGACATTTGCAAGACGTCATATCTATAGATATGGGACACAATGAAGGggatgtgaacatgaacatgtcCCTGACTTATGTCATGATGCCGATTACATGATGATCATTTAAAACACATGGTTATtgtgtaataacaataattcttTCTTATTGTTAACAAATCAATAGTAATTACTCCTTATTGGTTTTCTTTGGAGAACTGATAGATGGCCAGTTTACATTGAGCATAAACTGCCTCAAAGCTTGATTTTAGCAATCACATTTTATGTCatgcttataaaaaaaaaggggggggggaaCCACAGCACTACATGGTTGTTTCAGACCTTTTAGTGCACAAACATAATTTTATGATACAAAATACATTTCGTAAAATACTTTTATTGAATAGAGTTTTTTGTCAAAGGGTATTCATATACTGTAGAACGATGTgaattatacactgtataacAGAAGTGTATTAGTTTGTGTTCAGATTCATGTTGTATTGAAaatgattttacttttttttaattttattttattttattattatttgtgccTAAGGGAAAATATATCACAAAGTAAGCTGAAGGtgcacacactgtttattagTTACATCCCTTAATACATACGAATCTTTGAGCTTAAAtgtgaacctgtgtgtgtgagcactgaagaacattttagCCACAGTGTTAAATGTGACCAGGTTCAGCACATGGCAAAAATAATCATCTCACACCcttagaatttttttatgttgcgACACTGTGGTTTCCCCcatacacacaaattaaatattgtaatgcTGGTGGACCTGACTGCCTACAAATGATATGCATAGAACATATAACTAAATTGCTATATTGCTAAAACTGTAACAGATTTAGTAATCACATGCATTAAATAGTCTATACTGACATGCTTACACACAGAGTGAACATCAACGTGCTATGCTTTTGTTTCATATAAACTGTGGAAGACTTATTCTGCTTTCTTAAAAGAGTGGTCTAACTTTTACAGCTCTCTGATGCATTTGAGGTGTAACATCATTGCACTAAAAACACTCAGAAGCCTTCTCTTTCCCCTCAACTCCATTTAAAACTACATCCAGTCCACTGAATGTCTGCAAAGGAAAAGGGGCAGGGTTGAGCAGCTGGGACGGAGCTCATTTCTAGACCAGTGTAGTGATATATGTAGTCAGAAGCATGAACTGAAAAAAACTGGCCAGATCCATTTTATGGCAacattgtgaatattttttatatttaatgttgtagtattactgaaaagaaacactttaaacacatttttaaattacaaaccACACCTTCAAGGCATGTAAATAGTACATTATGCATCCAAATAAAAATCCACTTGAAAAATATTGAAGCAGAACTGATCTGTGTATGGGGAAAAATGGCAGTAGCACAGCaactgtagttttcagaacttaAACCATGActgcttctgtagcagatcctcagTTACAGCTTGTTGAAACTAATCACaggcatttatgtaaattatttacctgAAGGCAGGTCATTGAGAAAGAGAAGAGTTTTCACTTTAAAAGAGACTTTAATACATTTGCCCTCGCTTTTCTAATTAGTGAGAACATTGCTTGTTAAAAAAAGTCAGCAAcgaaaacaatgtttaaagacaATTGGACAGAGAACTACACATTTATTCTCTGCTTCAGATTCACACAGTTGTAGTGTGAGTCCTGAGcaccactacaaaacaaaatataaccgcttcaaattgttttatttatagccattaaccaatcattaatggttaagcattgaGAGGTAAAAGTTATCCTGCCCTTTGTAAGAAACAAATgttatgtaactggaccttcaCAAATGGTACTTGAATACTCCTGGCATAGGCGAATTGGgaatatagtgcactatgtaggttCTACAATGTCATTGTGTTAAAACACAATGACATTGTAGaacctacatagtgcactatattcCCAACAGAAAGACAGTTAATATTCTTCACAATTCACTTTAAAATCCTGAATTAGGAAAGTCCTATAGGTTGTATACAAACATAGTTACACTCTTGTATAAGATTTGTTACAGCTGgcacatttctgtaaaactgatGTAGCTGCATTATGGTTGCTTTAGTTTGCACGAGTTTTCATTTACTCAACACTGGTGCAGCTAGTTCTTTTCGACATGGAAAAACCTACAGATTTTACAAAATTGCAAACAGTATTCTGCTCACCCTAGTCCTAAATGTTACCAAatggtttttgttgttgtttttttgttttgttggtaAAACCATAATAGCTAGTATAGGAATATAAGTAGGATTATAATCATCAGCAGTAGTGTGGATATAGTAAATTGGATTTaatgaaagatttttaaatctTAGGTAAGATGTGGTTAACAATAGacaaatgtactgtatgttctaTACACAAAATCCAGCCAAATGggtaatttaacatttatttttctaaatcatttaggttttttttaatgttctaaaTTGatcaaatgtaatgttttaaatcagAAATCTACTTGGTATATGGAGTGTTGACTGGTGTTAATGGTTTATGGAGAGAGTAATTATGGATAATTCGTTTACAGTGCAAAACCACTAACATCTGCTGTTTATTCAGAGCTCTGAGAGTGCAGCTGCTGCTGTCTTTACATTGCACTGCTGATGATGCAGCTCTGTGATGTAAATAGGATGCAAGCTGTCAGATATTGATTGACAGCCATAATGATCATTAGTCTGGGAGTGAGCCAAGTGTGTGTGACTCACCTCATTAATGAATGTACTTGGTGCTCTACATCAATCATGTGTGGAGTGAAACAGGATCAAAGCCACTCACTCAAGGTTTTAATAAAGAATGCATTCAGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225431 lncRNA downstream 38975 3776733 ~ 3776972 (-) True G190419
TU225345 lncRNA downstream 118526 3693964 ~ 3697421 (-) True G190354
TU225342 lncRNA downstream 128439 3687306 ~ 3687508 (-) True G190351
XR_004579273.1 lncRNA downstream 160337 3651026 ~ 3655610 (-) True LOC117598641
TU225326 lncRNA downstream 183525 3615420 ~ 3632422 (-) True G190336
XR_004579147.1 lncRNA upstream 14971 3845785 ~ 3849920 (-) True LOC117598488
TU225525 lncRNA upstream 89377 3920191 ~ 3925230 (-) True G190490
TU225612 lncRNA upstream 205837 4036651 ~ 4037340 (-) True G190563
TU225706 lncRNA upstream 328962 4159776 ~ 4161007 (-) True G190656
TU225783 lncRNA upstream 423679 4254493 ~ 4258754 (-) True G190731
XM_026934964.2 mRNA downstream 30817 3784309 ~ 3785130 (-) True med9
XM_026934622.2 mRNA downstream 164923 3648368 ~ 3651024 (-) True LOC113539064
XM_026947852.2 mRNA downstream 419589 3392545 ~ 3396358 (-) False neurod2
XM_034309129.1 mRNA downstream 419886 3392544 ~ 3396061 (-) True neurod2
XM_026947873.2 mRNA downstream 463398 3330026 ~ 3352549 (-) False med1
XM_026935101.2 mRNA upstream 99626 3930440 ~ 3935138 (-) True arg1
XM_034309403.1 mRNA upstream 107468 3938282 ~ 3971885 (-) True heatr1
XM_026914513.2 mRNA upstream 169635 4000449 ~ 4004877 (-) True sstr2a
XM_026915506.2 mRNA upstream 183033 4013847 ~ 4016313 (-) True LOC113527563
XM_026915800.2 mRNA upstream 461137 4291951 ~ 4295240 (-) True sox9a
TU224811 other downstream 960454 2852055 ~ 2855493 (-) True ndufa4
TU224780 other downstream 1001367 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other downstream 1010041 2800076 ~ 2805906 (-) False LOC113547504
XR_003404831.2 other downstream 1604968 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 2244874 1568286 ~ 1571073 (-) True G189199
trnap-cgg_2 other upstream 1067960 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 1069152 4899966 ~ 4900037 (-) True trnap-agg_2
trnap-ugg_3 other upstream 1070322 4901136 ~ 4901207 (-) True trnap-ugg_3
trnap-ugg_4 other upstream 1071514 4902328 ~ 4902399 (-) True trnap-ugg_4
trnap-ugg_5 other upstream 1072807 4903621 ~ 4903691 (-) True trnap-ugg_5

Expression Profile