Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034309572.1 |
| length | 1411 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 13 |
| gene id | psmc5 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 2583781 ~ 2590145 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0000502 | proteasome complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0008134 | transcription factor binding | molecular_function |
| GO:0031531 | thyrotropin-releasing hormone receptor binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0017111 | nucleoside-triphosphatase activity | molecular_function |
| id | description |
|---|---|
| K03066 | PSMC5, RPT6; 26S proteasome regulatory subunit T6 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU224575 | lncRNA | downstream | 184305 | 2394026 ~ 2399476 (-) | True | G189702 |
| TU224375 | lncRNA | downstream | 303028 | 2280546 ~ 2280753 (-) | True | G189547 |
| TU224340 | lncRNA | downstream | 421210 | 2160630 ~ 2162571 (-) | True | G189521 |
| TU224331 | lncRNA | downstream | 436866 | 2146712 ~ 2146915 (-) | True | G189512 |
| TU224263 | lncRNA | downstream | 522516 | 2048830 ~ 2061265 (-) | False | G189451 |
| TU224592 | lncRNA | upstream | 1548 | 2591237 ~ 2609773 (-) | False | smarcd2 |
| TU224598 | lncRNA | upstream | 13504 | 2603193 ~ 2604096 (-) | True | G189717 |
| TU224599 | lncRNA | upstream | 13504 | 2603193 ~ 2604043 (-) | False | G189717 |
| TU224700 | lncRNA | upstream | 65614 | 2655303 ~ 2655507 (-) | True | G189810 |
| TU224750 | lncRNA | upstream | 105091 | 2694780 ~ 2701420 (-) | True | G189855 |
| XM_026947903.2 | mRNA | downstream | 220496 | 2361824 ~ 2363285 (-) | True | LOC113547524 |
| XM_034309128.1 | mRNA | downstream | 238108 | 2335633 ~ 2345673 (-) | False | samd14 |
| XM_034309127.1 | mRNA | downstream | 238108 | 2335634 ~ 2345673 (-) | True | samd14 |
| XM_034309549.1 | mRNA | downstream | 249129 | 2308241 ~ 2334652 (-) | True | med24 |
| XM_034309486.1 | mRNA | downstream | 314726 | 2245794 ~ 2269055 (-) | True | LOC117598634 |
| XM_034309571.1 | mRNA | upstream | 1723 | 2591412 ~ 2600533 (-) | True | smarcd2 |
| XM_034309575.1 | mRNA | upstream | 16344 | 2606033 ~ 2615766 (-) | False | si:dkeyp-118b1.2 |
| XM_034309574.1 | mRNA | upstream | 16344 | 2606033 ~ 2615765 (-) | True | si:dkeyp-118b1.2 |
| XM_034309577.1 | mRNA | upstream | 16344 | 2606033 ~ 2615760 (-) | False | si:dkeyp-118b1.2 |
| XM_034309576.1 | mRNA | upstream | 16344 | 2606033 ~ 2615760 (-) | False | si:dkeyp-118b1.2 |
| XR_003404831.2 | other | downstream | 372802 | 2194987 ~ 2210979 (-) | False | LOC113547489 |
| TU223956 | other | downstream | 1012708 | 1568286 ~ 1571073 (-) | True | G189199 |
| TU223922 | other | downstream | 1018521 | 1564890 ~ 1565260 (-) | True | G189180 |
| TU224780 | other | upstream | 203357 | 2793046 ~ 2814580 (-) | False | LOC117598559 |
| TU224784 | other | upstream | 210387 | 2800076 ~ 2805906 (-) | False | LOC113547504 |
| TU224811 | other | upstream | 262366 | 2852055 ~ 2855493 (-) | True | ndufa4 |
| trnap-cgg_2 | other | upstream | 2309085 | 4898774 ~ 4898845 (-) | True | trnap-cgg_2 |
| trnap-agg_2 | other | upstream | 2310277 | 4899966 ~ 4900037 (-) | True | trnap-agg_2 |
