RNA id: XM_026947818.2


Basic Information

Item Value
RNA id XM_026947818.2
length 2628
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC113547465
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3278909 ~ 3321622 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagaAAATGGCGAGAAGGAGAACGAACCGCATCACCGGGACCTACAACGCTCACCGGGTTCCGGTACGATCCGGCCCGAGTCCAAGGCTGCAGTGATAACCTCGTACACCCCACTGGCTAAGCTACAGGAGAGTGCTGTGTGATGTACTGTTTGGGCTGACGCAAACTTTAGGGCTCCAGAAACTGAAGCGCTCACTGTCATTCAAGTCAATGATGCGGAGCAAAAGTGTCGAGAACTTCTTCCAGCGGTCAAATATTGAGACCCTGCCCCCTGACAGTATCATCACTATTGAGGCTCCACCCTCCATCATTGAGTCTCCCTTTTGTGACTGTCCTTTGACCCTTGACAGGTCCCCATCCATAAGTCcaaacctgtctctctcttcacgTTCACCTTCATCAAGCCCATCCCTGTCAGTTAACTCAAatactcctcctcctcagccacGCCCGCAGAAAACACACTGTTTCTTGGAATATGTGTTTCGCCGGCCCACTGTCTGCCAGCAATGCAAGCAAATGATAACAGggAACTCAAAGCAGGGTCTGCGCTGCAAGACATGTAAACTAGCAGCACATCTGTGGTGCTCATCTGAACTTTCACAGCAGGTGTGCAATGGAAAGTCAGGGACGTTCAAGCGGAACTTCAGCTCTCCATTGCTCACTAACGAGCTGTTTACAGTCATTaaggaagccccgcccactcaagaacAGGGAAAAGGCACAGTGGACCCCGTATATGAAGCCTTGCGATACGGAACATCTCTCGCGCAAATGAGCCGATCGACATTCAATAGCATCTCAGAGTCGCCATGTCTTCAGAGTGAAGAAGGACAGGAGAAGTTGGACAGTGAAGCTGTTGCTGTAGAAGAGTGCGTTCCTGAATCTGAGGTGTGTTTGGCTGAGAGTGAGAAGAGTGTGACAGAGGACAAGATCAGTTTACAGccTCCCAGGCGTATTGAGCTTCGCGCCATTCACACCTATGTGGTGTTGTACAAGTTCCTGCCTCAGGAGAAAAACGACCTTGAGCTTCAGCCGGGTGATCGTGTTCAGGTAATCGACGACTCAAACGAGGACTGGTGGAAGGGGAAGAGTCAAGACAAAGTCGGATTTTTCCCTGCTAACTTTGTGCAGCGGGTGCGTCCTGGAGAACGAGTATGGAAGGTCACTCAGGGTTTCCATGGCAACCGCGAGAAAGGTCAAATGACTGTAAAAAGAGTTACAGATCTGCGTTGGGAAATCGGAGGAAACAGATGGATTTTTCAAGCTGACCAGCGGTAAGAAGAGAGGACTCGTACCTTCAAAGTGTGTAGTGGAGATATGAACAACCTCCTCGccatacagacacacaacaaCGGCAGggacacactctcacacaccagCAAGCACCCTGGAATGGAAGTGCACTTGCTTCGCTCACTTCATTTCACACGGCTTTGAGAATGAGACATAAAGGAAGCCATCTGACTGGCCgattctgacctctgacctcagaCACACATGACCAGTGGAACAGTTTTGGTTTGGATGATGGCACTGTAACtgtctggtgtgtgtgcgtgtgtttgtgtgtgtgtgtgagtatgttcACTCAAACATTACAGTAGCAAACAGGATCTGTGTCAAATCATGTGTGTCAGTGAACATCACTGAGAGACAGGAACAGATGCAGTGCAGGAAAAAAGAGACACATGAAGTGATTTTGCATTTACCTGTCCCATCATGCACCACTGAATGAAATGGGAGGGGATTGTAGGAGACCCGTCATGGAGAACACTGGCTAAACATAAAAAGCTGTAAAAGGTGTTGGCTGGCTAAGGGAATGTTATTGAATTAGTTTAGTTAAACCTTAGTTAAAGATGTCCCACGTTATACTGAACAGTCTCTAAtacctgtgtgtttattactgaGTCTATACACACTGTTCCACATTTCTGCACAATCATATGAACCACCTTTATACACTTAAAAAAAGTGAACGCTTCCTGTGTGTTAGAGATGTAACTGACTATGTTATTCGGATTGAATAGACGATATGCTCTAAAGCGATACCTTGAGTCTTCACTTCTAGGTACGGTCATGACTGGaggatgtagctgaggttgaggaactgtgaGAGCCTGTCACACCATGCTGATACTGCTGATATTTATACAGGAGGTTTCaggtgttttccagtgtttcctggGGGCAAAGTGATTGGATTcatatttaattgaaaaaaaatgaatttaggtttaggccatgcccactttgaattttaaatctaaatgcagacatttggagcactaaacagacacagacacagatagtgTCATCGTGTTACACCCCTACCGTTTAGTCACAATGTGTACTTACCCCAGACAAACCAGAGCTTGATTCATGTGTATTTACGTGTGATGCATAAATCTTGAGGTGTAACATTACAGTTCCATGTGTAGTTTATTAGAGACACTTGATATAAAGCTAAACAAAATAATCTTCTGTCATTCTACAAcaatcaccatcaccatcactgCTGTTAACGTTTTAACTTCgtctgtttacatttaataaacccactttatgtatgtttttctaCATGACTACATGTAGTATTTCAGTATTAGATCACAGTGTGAGATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225044 lncRNA downstream 103274 3174077 ~ 3175635 (-) True G190100
TU225042 lncRNA downstream 103274 3174986 ~ 3175635 (-) False G190100
TU225039 lncRNA downstream 103274 3175074 ~ 3175635 (-) False G190100
TU225038 lncRNA downstream 104942 3173060 ~ 3173967 (-) True G190099
TU225036 lncRNA downstream 107338 3170883 ~ 3171571 (-) True G190097
TU225167 lncRNA upstream 28101 3349374 ~ 3349729 (-) True G190188
TU225215 lncRNA upstream 106163 3427436 ~ 3427644 (-) True G190232
TU225293 lncRNA upstream 175856 3497129 ~ 3497399 (-) True G190304
XR_004579133.1 lncRNA upstream 214392 3535665 ~ 3536422 (-) True LOC117598465
TU225326 lncRNA upstream 294147 3615420 ~ 3632422 (-) True G190336
XM_026947822.2 mRNA downstream 36266 3238419 ~ 3242643 (-) True LOC113547469
XM_034309531.1 mRNA downstream 44988 3222430 ~ 3233921 (-) True LOC113547516
XM_026947893.2 mRNA downstream 44992 3222430 ~ 3233917 (-) False LOC113547516
XM_026947889.2 mRNA downstream 57386 3212858 ~ 3221523 (-) True patl2
XM_034309010.1 mRNA downstream 73230 3183070 ~ 3205679 (-) True cmn
XM_026947873.2 mRNA upstream 8753 3330026 ~ 3352549 (-) False med1
XM_034309340.1 mRNA upstream 8755 3330028 ~ 3352234 (-) True med1
XM_034309129.1 mRNA upstream 71271 3392544 ~ 3396061 (-) True neurod2
XM_026947852.2 mRNA upstream 71272 3392545 ~ 3396358 (-) False neurod2
XM_026934622.2 mRNA upstream 327095 3648368 ~ 3651024 (-) True LOC113539064
TU224811 other downstream 423416 2852055 ~ 2855493 (-) True ndufa4
TU224780 other downstream 464329 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other downstream 473003 2800076 ~ 2805906 (-) False LOC113547504
XR_003404831.2 other downstream 1067930 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 1707836 1568286 ~ 1571073 (-) True G189199
trnap-cgg_2 other upstream 1577501 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 1578693 4899966 ~ 4900037 (-) True trnap-agg_2
trnap-ugg_3 other upstream 1579863 4901136 ~ 4901207 (-) True trnap-ugg_3
trnap-ugg_4 other upstream 1581055 4902328 ~ 4902399 (-) True trnap-ugg_4
trnap-ugg_5 other upstream 1582348 4903621 ~ 4903691 (-) True trnap-ugg_5

Expression Profile