RNA id: XM_034309010.1


Basic Information

Item Value
RNA id XM_034309010.1
length 4268
RNA type mRNA
GC content 0.48
exon number 44
gene id cmn
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3183070 ~ 3205679 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAAGGTGTGGAGGAGCTTGAGCATCCTCTGTCTCttcgcctctctctctctctctgtctctcaagaTGTTGGGACGAGCGTTTTTCAGGGCGGCACTGCTGCTTTGTTTGGCTCAGCCGACGCTTCAGGGGGGAACAGGGTACAAACCTCAAAATGGTGGTTTGGGCCAAATGTTAATGCCATCCAAAGGATACAGTCTCGGTGCACAGAATGCCAACGCTTACCAACCCAACACTAAAGCACAagGTTATGGACCTGCAGCTCCTCAACCCAATGGAAATGGAGCCAAAGGTTATGGTGCTGCACAGGCTGCCGGAAACAGCGGACAACCcagtgGTCCATATAAAGGGTACGGCGCTGCACCTAATGCTCTCGGAAATGGAAATGGAGCCAAACCTAATGGTCCGTATAAAGGGTACGGCGCTGCACCTAATGCTCTCGGAAATGGAAATGGAGCCAAACCTAATGGTCCTTATAAAGGGTATGGTGTTGTACCTGCTTCTCTCGGAAATGGAAATGGAGCCAAACCTAATGGTTATGGAAATGGCGGCAAACCCAATGGATTTGGTGCATTTCCAGGTGCGGCTAAAGGAAATGGAGGTTACCGACCTGCTCCTGTAGCTTCTAAAGGACAGGGGCCAAAACCCAACGGCTATGGAGCTTCACCTTTTACATCCAATGGCCAGCAAGCCAAGGCAAACCCAAACGGAGGTTATGGGTCCAAGCCAAATAAGCCTGGATATGGAGCACAACCCTCGTATGgtgGATTTGGAGCAGGGATGAGAACGGCACCACAAATGGCCAACAAGGGAAGAGGAGGCTATGGGAAAGGCAATGGATTTGGCCATGCAAATTCTGCATTCACAGGCTACAGAAACGGACCTGCTGCTTATCCCCAAGCTGGAGCTGCTGCTTATCCCCAAGCTGGAGCTGCTGCTTATCCCCAAGCTGGACCTGCTGCTTATCCCCAAGCTGGAGCTGCTGCTTATCCCCAAGCTGGAGCTGCTGCTTATCCCCAAGCTGGAGCTGCTGCTTATCCCCAAGCTGGAGCTGCTGCTTATCCCCAAGCTGGACCTGCTGCTTATCCCCAAGCTGGACCTGCTGCTTATCCCCAAGCTGGAGCTGCTGCTTATCCCCAAGCTGGAGCTGCTGCTTATCCCCAAGCTGGAGCTGCTGCTTATCCAAAAACTGCCAAACCTGgttatggTGGAGGACCTTTGGCGCCGAGTGGACGACCGGCTAAGCCCAAGGgctaTGGTCCAGGGAATGGTGGTCCGAATGCACAGGGAGCAAAACCTGCAGGATACGGAGGCACCACAGGACCCAAAGCAGGATATGGTGGATATCCCAATGGAGGTGGAATTAATGGACCAAAACCAGGTTACGGTGGTTTGCCCACAGGATATGGACAGAGACCCAATGGATATGGAGGTTATCCCAATGGGGCTGCTAAAGCACCTAAACCAGGgtatggtgttggtgttggaaATGGAGGAGCAAGTAATGGACAAGGAGCCAAGCCTTATGGTTACGGTGTTCCTGCTGCTGGTGTACCGAAAGTTAAACCTGGATATggtcctgtaacaaatggaaatgaGAAAGGACCCAAAGGAAAAAGCCTTAGCCCTGAAGCCCCAAGTCTTCCACCAGTAACAGGGTACACCAAAGGAGTTGTACAGCCAGCTGAACCTGAGCCTACCATAGGAGTACCTACTGCGCTGCCACCCACCAAGGGAATGCCATTACTTGGAACGAGTTGGAAGGGCCCAAAACCTCAGTTTCCTGTGGTTCCACAAGGCTACCCATCTAAGCCAATAGTGCCAGAGCAGGCTCCAGTGATTCCACAGAATAAAGGACCCAAATCTGCACAATACATCCCACAAGGACAAGCCCTGATCCCAGAGCTTGCACCCATCATTCCTCAGGGTAAAGGTCCAAAGCCAGCTGCCCAACCAGCTCCAGAAATTCCTCAGGGAAGTCCTCAGAAACCATTTGCTCCTGCTTTACTTCCGTTTGCTCAACAAGAAGCCCCAAAGCCAATTACTCAAGTTCCACAGCCTGCTGCACCAGTGTATCCACAGGGGAAAGGTCCAAATCCAGTCGCTCTACAACCAGCTGTTCCACAAGGTAAAGTTCAAAAACCTACTACTACAGTGCTGCTTCCGGTGCTCTCTCAGACCAAAGGACTCAAACCTGTTGCTCCAGTTCCTGACAGTCCACAAATGAAAGATCCCAAACCTGTAGCACCAGAACCAGCTGCACCACAGACAGCAGGTCCTCCACTTGCCCTTGAACCAACCCCTGCTATGCCTCAGATGAAGGGTCCAAAAGTAGCAAATCCTGATTGTGGACTTGGAGTGTCTGGACAATGGACTAAGCTGCCCAGTCCTGGATATGGTCCTGGACCGTGGTACCCAAACAGTGGAGGAGCCAAGGCCTCAAAACCAGGTCAAGGATATGGCCCTAAACCCAATCAACCAGGCTATGTTAATCCAGCAGCAGGATATGGATATGGCAATGGTGCAGCCAGCCTTGGTGAGATGGTCAAAGGCAAATCTGGTGGAGCAGGACAGCTACCGTATAATGGTGCCCCCATCATCCCTGCTCGACTGGATGCAGGAACCAGTCCAATCCAACCGCAGACAGCTGAACTCGGGCCTGAGGTGAAATCTGGCCATGCTTACGGTGGGCCGTATGGAGCTCAGCCAATGGGTTTAGGCTCTGAGGGAAAGCCTCAAGTCAGATATGGTATTGGTGGCATTCTTTTTGGTGGCTCGCCCATGGGATACAACTCCAATCCATACGGAACATATGGTAATCCCTATGCTGCACAGCCTTATGGTTCTAAAGAAGCTGGAAACTACAATCCACTTGAATTTGCCAATCCCAAATCTGCTGCAAAATACAggatGGGAGGCTCTCTGTACACTGCTAGTCCTAGTGAAACTAAAGCATCAGGAAAATATGGACCTTATGGTGGCCAGCAGCTTGGTTTGCCAGCTGTCGCTGGGAATTCTGGGAAATATGGCAATCCATCGCTTCCCTTCGGTCCAGTCACTGACGGTCAGACCATCGATCAGTCCGCACTGCAGTATGAAGCTCCTGCTATTGACGGTGTGAAGTCTGTAGATCAGTTCGgagatGGAGAGGTGCAGCCCCAGCCTATTGCTCCTCTAGTAGATGGAGTTGGAGAAGggCCAGCCTCTTACGTCAAGGGAGGAGTCCGAGCTGAAGCTGTCTCTTTGCCCGCTGCCCCTACCGACGGCCCTTTCACTGGCTCCGCAGTGTCTCTAGGAAATCCCGCCTACTCGCCAGTGGACACGCCCACCGAAGCAGTGACACCGCAGCACATTCCGGTTCAGCAGAACCTCAAAGGCCCACAGCTGCCTCAGGATAAGTCCTGGACAGGAGGCAAGGAGCTGAAACGTGACCTGAAAGGATTCTTCGGCAACGGATATCATGgttGATCCTGAAGAAGAGTGAACAATCATGTGTCCTGttgttgttcatgtttttaGTAACTATTGTAAATTTAATCATTGtctatttttaaattctgaacCTATATTTCTTTCCCCCAATTCAGATTAAATTAAgaataaaacttatttttagggccactgtttaaaatgaagagaatgaaaaaatgattattttttcccaGAACTAAAGTAGTGATATTGCaggtttattatataaaaaaaatactcaataTTTATcgaaattaatatttaatggtTTCTCAGATCATAAAAAACTACTTTACTctcaaaattcaaaatcaattttttagtatttttaacaGTAGCCCTAAAATGCCATTTTCACtgtatttgtgtctttttttttaaaaaaaaaaaaaagcccccaCTGAGCAGCCAGATAATTTGTGTcccatacagtatataatgaaCACAAATGTTTTTATGCGATATTGTTCTGTTCTGCCTTCATTTCCTTCTCAAACCTTTCACTGTATCAGAAATGCATGCTTTTCTGTCttatgtgtattattttgtaaCTAAGCACGGGATAATTTATTGAGTATGGATTTCTTTCTGTGGCGAGGCGCTCGCTGATTTTTATAAAGTTccgtttttaataaaaaaagaaaaaaaaaaaaaaaggagggacACTGAAGACTGCTCTTGGTTATGAGTGCTTTATTGTTTTACACAGTGAAatccccagggccatattctaaAGTTCAAAAATTATGTCAATATTTGTCAatataactaaaaaataaaaaagactactacaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225044 lncRNA downstream 7435 3174077 ~ 3175635 (-) True G190100
TU225042 lncRNA downstream 7435 3174986 ~ 3175635 (-) False G190100
TU225039 lncRNA downstream 7435 3175074 ~ 3175635 (-) False G190100
TU225038 lncRNA downstream 9103 3173060 ~ 3173967 (-) True G190099
TU225036 lncRNA downstream 11499 3170883 ~ 3171571 (-) True G190097
TU225167 lncRNA upstream 143695 3349374 ~ 3349729 (-) True G190188
TU225215 lncRNA upstream 221757 3427436 ~ 3427644 (-) True G190232
TU225293 lncRNA upstream 291450 3497129 ~ 3497399 (-) True G190304
XR_004579133.1 lncRNA upstream 329986 3535665 ~ 3536422 (-) True LOC117598465
TU225326 lncRNA upstream 409741 3615420 ~ 3632422 (-) True G190336
XM_026947914.2 mRNA downstream 2602 3176904 ~ 3180468 (-) False LOC113547533
XM_026947913.2 mRNA downstream 2602 3176904 ~ 3180468 (-) False LOC113547533
XM_026947912.2 mRNA downstream 2602 3176904 ~ 3180468 (-) True LOC113547533
XM_026947876.2 mRNA downstream 15279 3159988 ~ 3167791 (-) True ppp1cab
XM_026947883.2 mRNA downstream 31615 3137134 ~ 3151455 (-) True atp2a1l
XM_026947889.2 mRNA upstream 7179 3212858 ~ 3221523 (-) True patl2
XM_034309531.1 mRNA upstream 16751 3222430 ~ 3233921 (-) True LOC113547516
XM_026947893.2 mRNA upstream 16751 3222430 ~ 3233917 (-) False LOC113547516
XM_026947822.2 mRNA upstream 32740 3238419 ~ 3242643 (-) True LOC113547469
XM_034309048.1 mRNA upstream 73230 3278909 ~ 3321622 (-) False LOC113547465
TU224811 other downstream 327577 2852055 ~ 2855493 (-) True ndufa4
TU224780 other downstream 368490 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other downstream 377164 2800076 ~ 2805906 (-) False LOC113547504
XR_003404831.2 other downstream 972091 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 1611997 1568286 ~ 1571073 (-) True G189199
trnap-cgg_2 other upstream 1693095 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 1694287 4899966 ~ 4900037 (-) True trnap-agg_2
trnap-ugg_3 other upstream 1695457 4901136 ~ 4901207 (-) True trnap-ugg_3
trnap-ugg_4 other upstream 1696649 4902328 ~ 4902399 (-) True trnap-ugg_4
trnap-ugg_5 other upstream 1697942 4903621 ~ 4903691 (-) True trnap-ugg_5