RNA id: XM_034309599.1


Basic Information

Item Value
RNA id XM_034309599.1
length 3052
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC113547478
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2906154 ~ 2923348 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACCTCAGATACCAAACCTGATTGACATTTGTTGTAGTCTCATGGAGCATCTGATACTTTTTGTACACTTTCCTGGCttcaagcttcagaatcttcagATTCAGAACATTGCAGTTCAATTAGCTACACAGACGAGTAttcaacgttttttttttttcctcaaacagtAAATGGTAGGTATCTGTAATTGGAGGCTTACAGTGTCAGTCAAAAGCTTCTTTCTGTTAAATTATGCCATTAGCCATCTAGGGAAAGCTCAATATGGAGTCAAACCATGCCTGAAACTCCACCTTCTTCCTATATAACGTCTTGTAAATTCCTATGTCTGACTAGCGATGAGGTTTAACAAAGTCTGGCTTGTAAGGCTACCCTAAATCTCTCCAGAAACACCCGAGTCACAGACTGTTGATGGCGTTTCTTCATTCAGATCTCATGAAAGCAGGCCTGTTTATGTGCCGTGAAATGTAAAGGTCATCCCCTGCTCTAAATGCAGACCCACTTCTGGCCACTCAGTCAATACTGTGCCACAATAACCGCTCTGTAGCTGCAGTGGACATTGATTAGTCAGGTGCCAATACTATAGCTTTTCTGCTATCCTCTAATTTATTAGACGCTAGACAGTTTaggtcttttttgttgttgtttttgttgttgttatgtgAAGTGTGATATGTGAAATGATCGAGCCATCTGGCTGTTTGATTTGTTAATGAGCTTCCCACCGCTGTGGTGAGTGATTGATCAGTTCTCAGTTTGGAGAATGATTCTGTGTGAGGACCACAGTGCTGACACTCAGTCACAACAAGACTACACAAGTCTACAAAGATGAAGGACTCACTAAAATCCTGAAGAGAAGAAAACGGAGGAAACGACACCGCTCCGTGACTATGCAGGTTTGGTGTGCTGAGCTCACCTGCTAACCCTGACCAGATGAAGTGTGGAGTTGCCAACCGCTTCCCAGCTTTCTCCCTCAGCTTTAGCCGTCCCAGGCGTTCCATCTCCAGGGGTTCGCCCCAAAACATCGAGCTCATCGCCATCCCTAAGACAGTGTCTCTGGGCACCAATGTGTTCCCTGAGTATCAGCTCCAGAATCCAGACGTTCATAAGTGGATCATGCTGCACTACAGTCCCTTTAAGGCAGCATGGGATTGGGTCATCCTGCTGCTAGTGCTCTACACTGCAATCTTCACCCCCTACTCAGCCGCGTTCCTGCTTAATAGACTTGCAGAGAATCAGCAACATGTCTGCGGTTACACCTGCAACCCACTCAACGTTGTGGATGCCATCGTGGATGTTTTGTTCATGGTGGATATCGTGATCAGCTTTCGTACCACATACATCAATCATAACGATGAGGTGGTAACACATCCTAAACGCATTGCCATCCACTACATTAAAGGTTGGTTTCTTATTGACATGGTGGCTGCCCTTCCTTTTGACCTGCTCATCTTTAAATCCGGATCCGACGAGACGACGACCACTCTGATTGGTCTCCTGAAGACTGCACGACTGCTCCGATTGGTCCGTGTGGCCAGGAAGTTAGATCGGTACTCAGAGTATGGAGCTGCAGTCCTATTCTTGCTCATGTGTACGTTTGTGCTCATAGCTCATTGGCTGGCATGCATCTGGTATGCCATTGGCCATGTGGAGAGGCCCTATATGAAAACAGGCTGGTTGGATAACCTGGCTGATCAACTGGGGAAGTACTATAATGACAGTGACGCCAACTCAGGACCTTCCATAAAAGATATGTATGTCACTGCGCTGTACTTCACTTTCAGCAGCCTGACTAGTGTGGGTTTTGGGAATGTCTCACCCAACACCAACTCTGAAAAGATCTTCTCCATCTGTGTCATGCTTATTGGCTCCCTCATGTATGCCAGCATATTTGGGAATGTCTCAGCAATCATACAGCGTCTATATTCTGGAACCACACGCTACCACACACAGTTGCTGAGGGTCAAAGAGTTCATCCGTTTCCACCAAATACCACCAGGCCTGAGGCAGAGGCTGGAGGAGTATTTCCAGCATGCTTGGTCCTACACCAACGGCATTGATATGAATGCAGTTTTGAAAGGTTTTCCTGAATGCCTACAGGCTGATATATGTCTCCACTTGAATCGCAACTTGCTACAGAACTGCAAGGCCTTCAAAGGGGCCAGTAAAGCCTGCCTGAGAGCCCTTGCCATGCGCTTAAAAACCACCCACTCCCCACCAGGGGACACCCTCTACCATCACGGCGATATTCTCCATACCCTGTACTTCATCTCGCATGGCTCAATTCAGGTGTCCTGCAATGAAGTTGTGCTTGCTATACTGGGCAAAAACAATATCTTTGGCGAGCCCATTAACTTGTACGCAGAACCTGGCCACTGCAATGCTGATGTAAGGACACTCACCTATTCTGATCTCCACCAAATCCAGAGAGATGATCTCTTGGAGGTACTGGATATGTACCCAGCCTTTGCTGAAAGCTTCTGGAGGAATCTGGAGATCACCTTCAACCTCAGAGAAGTAGATCAGGTTCTTCACACCCTACACAGAGAAGATAATGGCTGCCATTACCATATTAATCACCCAAGGCATCATGAAAACTCAGTGGAGAGACGCAACAGGCCAGATGGAATGGATCAAGATAATTCCTATTCAGTTCAAACATGCCTGGGTCATCCCTGCTTTGCTGGCCCTCACACTCACTGGGAAGAACTGTGTAGCTGTGGCTCCTCCAGAACACAGTCTAGTGAGAACATCAACAAACCACCTCTTTCCCACAGGCAAGTATACAGCCCTGAAGGAGACCCCCAGGATTATCCTCCGTCTGCCCAACGGGTGATTCCACCGAACAGCAAATCTGGGAAGGGCATAGAGCCTGGCATGGACAGAGAAGACTGTCCCAGTGAGCTAGAGTCCAGACTCGAGTTACTGCAAAGTCAGCTTAACAGAGCGTGACCAGACCTGATTCAGAGTTCACACCAAAGCCTTTGGATTCACAGCTGAGCAGCATCCATATGATGGCGAcagaaaagaatgaagaaagcACCAGACACATGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224817 lncRNA upstream 30857 2874155 ~ 2875297 (+) True G189916
XR_003404829.2 lncRNA upstream 261970 2641841 ~ 2644184 (+) True LOC113547470
TU224557 lncRNA upstream 290399 2614697 ~ 2615755 (+) True G189684
TU224489 lncRNA upstream 296657 2591238 ~ 2609497 (+) True G189626
TU224838 lncRNA downstream 2751 2925214 ~ 2925571 (+) True G189933
TU224839 lncRNA downstream 5338 2927801 ~ 2928169 (+) True G189934
TU224845 lncRNA downstream 8470 2930933 ~ 2931380 (+) True G189940
TU224846 lncRNA downstream 11892 2934355 ~ 2935400 (+) True G189941
TU224851 lncRNA downstream 18767 2941230 ~ 2941830 (+) True G189946
XM_026947846.2 mRNA upstream 128 2898889 ~ 2906026 (+) True LOC113547481
XM_026947904.2 mRNA upstream 208907 2656860 ~ 2697247 (+) True ngfrb
XM_034309412.1 mRNA upstream 331380 2543438 ~ 2574774 (+) True mpp2b
XM_026947841.2 mRNA downstream 154630 3077093 ~ 3082950 (+) True LOC113547477
XM_026947827.2 mRNA downstream 171541 3094004 ~ 3099985 (+) True LOC113547472
XM_026947828.2 mRNA downstream 171543 3094006 ~ 3099985 (+) False LOC113547472
XM_026947847.2 mRNA downstream 177741 3100204 ~ 3107200 (+) True mto1
XM_026947901.2 mRNA downstream 196031 3118494 ~ 3126524 (+) True LOC113547522
TU224759 other upstream 145144 2760693 ~ 2761010 (+) True G189864
TU223925 other upstream 1240817 1663092 ~ 1665337 (+) False LOC117598477
XR_003403557.2 other upstream 2685786 137521 ~ 220368 (+) False ccser2b
TU224820 other downstream 47662 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 47662 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 315981 3238444 ~ 3239216 (+) True G190028
TU225191 other downstream 478804 3401267 ~ 3405009 (+) True G190212
TU225438 other downstream 859668 3782131 ~ 3782495 (+) False rasd1

Expression Profile