RNA id: XM_026947845.2


Basic Information

Item Value
RNA id XM_026947845.2
length 3176
RNA type mRNA
GC content 0.48
exon number 13
gene id pth3r
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2874516 ~ 2896348 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agctcagcaGTGACATGACCGTCACTCCTCTGTAGTGCGAGAACACAGGAGAGAACCCGAGACTCGAGCAGAACCGGCCGTTAGATTCTGATTCCGTTCTGTGTGTGGACGCTGCAGAGAACTGGCGATGGCTTCATGATGGACGAATACATCTGAGCACCTGGAGTTCACCTCACCGTTCTCCACCAGGAAATGTGCTTCAGACGAAGAACCAGGTGAGGCTGAAGAACCGTGAAGCATGGAGCTGATGGAGCTTTCTACAGCATTCGTGCTCTTCAGCGTGTTAATGACGGCGAAGGCACTGATCGACTCTGACGATGTCATTACTCGGGATGAGCAGATCTTCCTCCTGATTCGTGCACGGGCAAGGTGTGAGAGAAGCATCCGAGCCCAGTTGAGCACGGTACGAGTTGGTGACTGTGTGCCGGAATGGGACGGCATCATCTGCTGGCCGAGAGGGAAGCCCAATCAGCTGGTAGCTGTGCCCTGCCCTGAGTATGTTTACGATTTCGACCACAGAGGTCGTGCGTACCGTAACTGCGACACGTCGGGGAACTGGGAGCAGGTTCCCACCATCAACCGTACCTGGGCTGATTACACTGAGTGCACGACGAAGCTGCAGTCCAACCATGGCAGgcaggaggagGAGGTGTTCAGACGGCTTCATGTGATGTACACTACAGGTTACTCCATCTCTCTGACCTCGTTACTGGTGGCCGTCTTCATCCTCTGCTACTTCAAACGTTTACACTGCACTCGTAACTACATCCACACCCACCTGTTCACCTCCTTCATATGCCGAGCAGTCAGCATCTTCGTGAAGGACGCTGTGCTCTACACAAAGGAAGACACTGAAGCAGAGTACGGAGAAGTGGGAACCCAAGCTCagatgGCGGGCTGTAAAGTGGCCGTGACCTTTTTCCACTATTTCCTGGCGACCAATCACTACTGGATCCTGGTGGAGGGCCTGTACCTGCACAGTCTGATCTTCATGGCTTTCCTGTCTGATAAAAATTACCTGTGGGCTCTAACCATCATAGGCTGGGGCGTTCCCGCTGTTTTTGTCTCAATTTGGGTCAGTGTTCGAGCCTCGCTGGCTGATACACAATGTTGGGATATCAGTGCAGGGAATGTGAAATGGATTTTTCAAGTTCCAATCCTTGCAGCCGTCGCTgtcaacttctttcttttcctcaacaTCATTAGGGTTTTGGCGTCAAAGCTGTGGGAGACTAACACGGGGAAACTGGACCCGAGGCAGCAGTACAGGAAGCTGCTGAAGTCGACGCTGGTGCTGATGCCACTCTTCGGGGTACACTACGTGGTGTTCATGGGTCTTCCTTACACAGAGGTCACTGGGCTGCTTTGGCAGATCCAGATGCACTACGAGATATTCTTCAATTCGTTACAGgGCTTTTTTGTGGCCTTCATCTACTGTTTCTGCAATGGAGAGGTGCAGGCGGAGGTGAAAAAGGCGTGGCTGAGGCGGAGCCTTGCTCTGGATATCAAGCAAAAAGCACGCGTAGTCAGCAGCAGTGGGGGCGGGAGCTGTTACTACGGCGGCatgacatcacacaccaccactCAGAGCATCTGTCTTGGTGCTCAGGGACCAATCCTGGCTCGGGGTGTGGCCTTAGGAGTCAGAGGCCAATCGCATGTTGCTAACCTGCCAGGGTACACACCCAATGAGACTGCAGAGACCACATTACCCACAGTTCAGCAGTCAGAACTGAGAAGGGCCGAGAGCATGGGGACACTGTATGATCAGAATGGGCAAATAAATGTAGGACCtcgtgaggaggaggaggtatTAGAGAAAGAGCCATCACTATACTTTATAGCTGAAGATCATTCCGGCTCGGTGTCACTGAAAGATCTGGAAACGATTCTATGAAAAACTTTGAGTTGTTAAACTTCAGCTGGCTAGTAGGTTTTGTTTTCTCTAGCAATTGTAATGGTAAATGTTTGAAACTGATgtatatcatatttttattatttccttaGTCAAAACTACTGAAGTGACCAGCATTTGTATTTAGTTATGGATATTTATTTGATGATTAGTCATAATCTACTGCATTGATATAAGAAATTAGCAtagggtttgttttgatttagcAACTCAAAAGCTAGCTACTAGCTAGGGTAGATGTATGAAAACATTCTTAAGTGGGTGTAAATACTGTGCCTTGAATTTCATCCCCCCATCCCCCAACCCCACCCAGTGtgaacatttctttattttgtagtgttacaaactgaaatggacttaatcgGGATattaccatttgatttacacaatatgtctaatTTAGATCCTGCATATCTAGATCTTGCATCTAGATCTTTATATTTTTGCCTATTCTTCTTGAcaaaattgctcaagctctgtcagCTTGGATGCAGACCACTGATGAACAACAGTGTTCAAAGTCTTGCCTCAGATTCTCAATAGGTTTGAGTACTGGgacattctaacacattcaggttcttagttttgaaccactccagtgtagctttggtAGTATGCCTGGGGTAATTGTCCTGTTGGAAAGTGAAATGCTGCCCCAGTCTCAAGTCTCTTGCAGACTGAATTAAGTTTTCTTCTAGGGTTGCCTTGCATTTTGCTCCATCCCCCAACCAGCTTCTCAGTCCGTGCCGATGAAAAGCATCCGCACAAACtgatgctaccaccatcatgcttcacagtggggaaGGTTTTCTCAGTGTAATGGGAGGGAGCAGAAGGGTTGGATAGCACTTCGTTCcaaaaagtattattttggtctcatcaggcAAAAGAACCTTTTCCCACCTAGTTCCCAAGTCTCCAAACGTAATTCTGTATGATTTATCTTTTAAATAATGGCTTTCTTCTCACCACTCTTCCATCACAAGTCCAGCATTGTGGAATGTCTGGGCTATGGTCCTATAAAAGATTTCTGGCAGTAGAGCCATGGATCTCTCCAGCTATGTCAGAGATACCCTTGGCCTAGGTaactcctctaggcagagtcgtGGCTGTCCTATATTCTTTAGTGACAAGTTGGCGTAGTGAGTAGAGCTATTGCTGTATGTTCCAAAGGGTGCTGGTTCAAGTCTCTGATCTAGTTTCTGGggggcagtcatggcctaacggatagagagtcggacttgcaacccgaaggtgaacc

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004991 parathyroid hormone receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224779 lncRNA downstream 46709 2796507 ~ 2827807 (-) True G189882
TU224786 lncRNA downstream 64597 2806601 ~ 2809919 (-) False LOC113547504
TU224782 lncRNA downstream 71552 2792827 ~ 2802964 (-) True G189885
TU224787 lncRNA downstream 75847 2798240 ~ 2798669 (-) False LOC113547504
TU224750 lncRNA downstream 173096 2694780 ~ 2701420 (-) True G189855
TU224982 lncRNA upstream 14664 2911012 ~ 2911255 (-) True G190048
TU225014 lncRNA upstream 180683 3077031 ~ 3077290 (-) True G190076
TU225033 lncRNA upstream 259563 3155911 ~ 3156150 (-) True G190094
TU225036 lncRNA upstream 274535 3170883 ~ 3171571 (-) True G190097
TU225038 lncRNA upstream 276712 3173060 ~ 3173967 (-) True G190099
XM_026947848.2 mRNA downstream 9527 2856236 ~ 2864989 (-) True rundc3ab
XM_026947900.2 mRNA downstream 19154 2852055 ~ 2855362 (-) False ndufa4
XM_034309351.1 mRNA downstream 46764 2813366 ~ 2827752 (-) True LOC117598559
XM_034309629.1 mRNA downstream 63125 2786081 ~ 2811391 (-) True LOC113547504
XM_026947878.2 mRNA downstream 129121 2732216 ~ 2745395 (-) True LOC113547505
XM_026947856.2 mRNA upstream 28247 2924595 ~ 2952904 (-) True erbb2
XM_026947911.2 mRNA upstream 61091 2957439 ~ 2967729 (-) True pgap3
XM_026947919.2 mRNA upstream 74982 2971330 ~ 2975144 (-) True mylpfb
XM_026947824.2 mRNA upstream 82958 2979306 ~ 2982750 (-) True LOC113547471
XM_026947826.2 mRNA upstream 82958 2979306 ~ 2982742 (-) False LOC113547471
TU224811 other downstream 19023 2852055 ~ 2855493 (-) True ndufa4
TU224780 other downstream 59936 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other downstream 68610 2800076 ~ 2805906 (-) False LOC113547504
XR_003404831.2 other downstream 663537 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 1303443 1568286 ~ 1571073 (-) True G189199
trnap-cgg_2 other upstream 2002426 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 2003618 4899966 ~ 4900037 (-) True trnap-agg_2
trnap-ugg_3 other upstream 2004788 4901136 ~ 4901207 (-) True trnap-ugg_3
trnap-ugg_4 other upstream 2005980 4902328 ~ 4902399 (-) True trnap-ugg_4
trnap-ugg_5 other upstream 2007273 4903621 ~ 4903691 (-) True trnap-ugg_5

Expression Profile