RNA id: XM_026947846.2


Basic Information

Item Value
RNA id XM_026947846.2
length 1245
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC113547481
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2898889 ~ 2906026 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTATATTACCtcagatattttcacttgtgcTGATTATTTCATTAAGAGTGACAATAGTTTTAAAAAGACGGGATGGAGGGGCCTGTATTTTGACAAGCCTAGACGAAACGGAAATGACGTAGTGTGTCGCTATAGACAGGGCTCGGGTTGGATGGTCCTTCATAATATCCGTGAGGTTTAATATTCTCGGTGGGAAATGTAGCGCGATTATTTCGGCAATGGCAGCCGGAGCGGTGTTACGTCCTTTTCTTTCCGGCTGCGCTCCTAAACTGTCGAAGGTTCCGCGGCTGAGCGCGCTCCCGGTCTGCGTCAGGACGGTGCACGTGTGTCCGGTTTTGCGCGCGGGCCACAACAAATGGTCCAAAGTGAAAGACATCAAGATCCCGAAAGATGCAGCTCGAGCGCGGATGATCGCCAAATACGCGATGCTGATCAGGGTGGCGGTGAGAGagggaGGACCAAACCCGGAGTATAATGTCACTTTGGCTCAGCTTATAGAGCAGTGCAGAAATAAAAGTCTACCCAAAGCCACCATCGAGGCTGCTATTAAAGGAGCGGAAAAGTCAAAAGCTGGCGCTCAGTACCTATACGAGGCGCGAGGGCCCGGAGGTTCCATGCTGCTCATCGAGGTTCTGACAGACAACAGCACACGCTCACACCAAGCCATCAAACACATCTTAATGAAAAATGGGGGGGCGATGTGTGAAGGCGCCCGGCATCATTTCGAGAGAAAAGGCGTCATCGTGGCGGCCCAAGACCAAGTTTCTACTGAAAGAGCTCTGGAGCTGGCGATAGAATCGGGAGCTGAAGACGTGCACGAAACCGAGGACGAGGAGGAGAAACCGATTTTACAGTTCATCTGTGATATGAACTCGATAAAAGCAGTGCGGACAGCGCTGGAAGCTCTCGGGGTTCACACCCTGTCAGCGGGGATGGAGTACATCTCCAACACTCCTGCTGCTCTACCACAGGACCAGCTGGACTCCAGCGCCACCCTGCTCGAAGCTCTCAATGATTACCCAGATGTGGTCAGAGTGTGGGACAACATTCAGGCACTGGAGTAAGACAGGAAAGAAGAGGAGGCTGAATGTTTCATGAGATACAAGTGAAGGACTGAAGCTTGATGAGTGCGAGAAAGGTCTACGTCAGTGATTTCCTCAATAtcttatataaaatgtgtgtatttgtgcaaaCTCGCAAATTGTGTTCAtaataaagatatatttataatttaaaaaattca

Function

GO: NA

KEGG:

id description
K18189 TACO1; translational activator of cytochrome c oxidase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224817 lncRNA upstream 23592 2874155 ~ 2875297 (+) True G189916
XR_003404829.2 lncRNA upstream 254705 2641841 ~ 2644184 (+) True LOC113547470
TU224557 lncRNA upstream 283134 2614697 ~ 2615755 (+) True G189684
TU224489 lncRNA upstream 289392 2591238 ~ 2609497 (+) True G189626
TU224549 lncRNA upstream 290811 2605883 ~ 2608078 (+) True G189678
TU224838 lncRNA downstream 19188 2925214 ~ 2925571 (+) True G189933
TU224839 lncRNA downstream 21775 2927801 ~ 2928169 (+) True G189934
TU224845 lncRNA downstream 24907 2930933 ~ 2931380 (+) True G189940
TU224846 lncRNA downstream 28329 2934355 ~ 2935400 (+) True G189941
TU224851 lncRNA downstream 35204 2941230 ~ 2941830 (+) True G189946
XM_026947904.2 mRNA upstream 201642 2656860 ~ 2697247 (+) True ngfrb
XM_034309412.1 mRNA upstream 324115 2543438 ~ 2574774 (+) True mpp2b
XM_034309413.1 mRNA upstream 324115 2543443 ~ 2574774 (+) False mpp2b
XM_026947871.2 mRNA upstream 325205 2531080 ~ 2573684 (+) False mpp2b
XM_026947872.2 mRNA upstream 325205 2531548 ~ 2573684 (+) False mpp2b
XM_026947842.2 mRNA downstream 128 2906154 ~ 2923348 (+) True LOC113547478
XM_034309597.1 mRNA downstream 128 2906154 ~ 2923348 (+) False LOC113547478
XM_034309596.1 mRNA downstream 128 2906154 ~ 2923348 (+) False LOC113547478
XM_034309598.1 mRNA downstream 128 2906154 ~ 2922463 (+) False LOC113547478
XM_034309599.1 mRNA downstream 128 2906154 ~ 2922463 (+) False LOC113547478
TU224759 other upstream 137879 2760693 ~ 2761010 (+) True G189864
TU223925 other upstream 1233552 1663092 ~ 1665337 (+) False LOC117598477
XR_003403557.2 other upstream 2678521 137521 ~ 220368 (+) False ccser2b
TU224820 other downstream 64099 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 64099 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 332418 3238444 ~ 3239216 (+) True G190028
TU225191 other downstream 495241 3401267 ~ 3405009 (+) True G190212
TU225438 other downstream 876105 3782131 ~ 3782495 (+) False rasd1

Expression Profile