RNA id: XM_026947855.2


Basic Information

Item Value
RNA id XM_026947855.2
length 2809
RNA type mRNA
GC content 0.43
exon number 18
gene id LOC113547489
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2194344 ~ 2210979 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTAGAGTTTCAGAGATGCTCTGATCTGGAACACTGCACAGAGCTGcagcacacacaaaacactcgATAAGCTGACaaaagtgtgagagagatattGATGTACATCTTTACTGTGTTGTGGAATTTCTGCTCCTGATGGATTTACCACTGCTGCTGTGCCTTCAGGTCGCGCTGCTCTTTATGAGTGGGGTGGCAAATGCAGAAGATTCAACTACATCCATGTTTCCTGTTGACTCCAGTGccgaaaaatgtacatttccaAACAGTACAAGCATCTGTCTTATTCCGCTCCAAACCCCATTCATGCATGATGGAGACATGCAGAAGACAGCATATGTCAGCTACAATGGTTTCCTGGCATTTGACCAACCAGTGGATAACAACCTCAATCCCAGTCTAGAAGGTTACAGAAACATCATCTTTCCGGCTTTGTACCCCATCTTCAGCTTAAACATGAGAAATGTCACCTTCATGCAAGCCACAGATGGCCCTCTTGTAACATTAGCTACAAAGGAAATTAATGCCATGTTCCCTGAGTACCCCAGCTTTGTAGCTACATGGGTCTTAGTGGTCACTTGGCAAGATATGTCAAACCCTGAATAtACGGATACAGTACAAGTTGTGTTGACCTCTAATGGTGTAGAGCACACTTTCATCCTGATGAACATTCAGAGTTTCATAAGTTTCATGGCCTTGGTTGGCTTTGCAAAGAACAGTTTCAGAAATTTGGGGATAATCCAGTGGACTCCTTCTTATCTGTTGTTTACTGAATCTAATCGCTGGGCTTACGAAGTTCAGAAGGGACCGTCTGAGCTTAGACGTCCTGTCGGGACTTTTCCATTAAGGAAACCAGACGTTCTGAATCCTGGTGTAAATGCCATTGAAGTGAAACTGCAAAAGCCGTTTAAATACTTTGGAAAATACTTTGACACAATATATGTAAATGAGAATGGAGCTCTGAGTTTCTCTGTTCCACTCCCTGACTCACTGACTCCTGTTGTAAATGCTGACATTAACATCATCGCTCCGCTGTGGACCGACCTTAAGGCTGATCTCCCAAGTATCTACTACGGAGAAACCAAAGATTCCATACTGCTAGACAGtgtagcttttatttttagatatctGTTTGCTGAATTAAACTTCATCCCTTCCTGGTCCTTCACAGCCACCTGGAACAACATATCCTACATCAATGGAACAGGGAGGGCCACTTTTCAAGCAGTTTTGGTCTCTGATAATGAAAGCACCTCATTGGTGGTGATGTCCTATATCTCTGTTGACCCTATTAATGGCCCCTGGCTGgctggCTATCAAGCACTAGATCCGATCTTTAGTTATAAGCTGCCAATAAATGACATCTCTGAGCTGGCTCGAAGCAACACATCATTAGGTTGGTGGATTTACCGCGTTGACGATGAACTCCCAGCCCTCTGTGAACATTTGATGTGCACTGAAAATGAGGTCTGTGAAAGGAGAGAGTCAGGTATCGGCTGCTACTCTGTGAACAAGACCAACCCTGACACCgttgCCCTCTGTGAACATTTGATGTGCACTGAAAATGAGGTCTGTGAAAGCAGAGAGTTAGGTATCGGCTGCTACTGTGTGAACAAGACCAACCCTGACAACTTTGatgCCATTGAGGCATGTACAGACAGTAGTGggtcagtgtctctctctcgctgtcagCTGTTTGAAGCTGGATATTCTGTAGAAGAGCTTCACCTCAAGGACCCCAACTGTACAGGCGTAGTCGAAGATGGCAGGCTGGTGTTCAGATTTGACAGTGATGCAAAACTCTGTGGTGGTAATCTAGAGAGTAACACCACACATCTAATCTACAACAATGCAGTCAGGACACTTTCAAAATTGATCAGCCACAACAGTAGGCTTAATATCTCCATTTCCTGTGTGTATCCTCTCATCCTGAATCTCTCCATGCCCATGGCCTTACAAGCTGAAGGAAGTGTGATTGACAAGGAGGTACCTGCTGTTGAGGGCACGTATCAGAGCCACATGCTTGTCTATCCCAATAATTCCTTTACAGAGCCTTACTCTGGCAATGTGACCATTGCTCTGAACCAGAAGATCTATGTGGCTGTGAAAGTGGCAGGATTTAATAGTGATCATATTGCCACTGTTCTGGACAGTTGCTGGGCCACGCCAAATATGGACTCCAACTCCGACATCTGCTGGTACCTGATTGTTAAAGGGTGTCCTAACCCCGATGATGGTACAGTGGAGGTGCTGGAGAACGGCATCTCTACATCCAGCTACTTCTACTTCAGGatgttctctttctctgctcttGGTGATAGCATCTTCCTTCACTGTCAGGTCCACCTATGCCTGCTGGATAGTGGTAACTGTGAAATGCGATGTGATTGAAACAGAGGATGCCAGGAACTAGAGGGGTGATACAGCTATTCCATGATCATGGGCTTCTGATTTGCTTATTCGTACTTGTACAATTTTTGTAAGAGGGCTCTGAAAAAGTatcatttttctgtcttctgtTTAATGAAAGTGTTGTGGGGACTTAAAAAAATTaccatttctattttttcatCAAAATTATACTATAATAATCACAACCAATGATCAAAAACTatcataaaaatagaatttgttattttttaaaatctttttttttctctgatccTTGGAAATTTTGTGTGATTGTACTCTCCTGCAGTATCTTATTATTGCTAAATATCAGTGAAACTGGATCAGTCTTAAGTTGTGTCCAAATATTACATAATCTAGTTCTCTACTTCTGTTCTAATAATAAAGACTATGATGCTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224340 lncRNA downstream 31773 2160630 ~ 2162571 (-) True G189521
TU224331 lncRNA downstream 47429 2146712 ~ 2146915 (-) True G189512
TU224263 lncRNA downstream 133079 2048830 ~ 2061265 (-) False G189451
TU224262 lncRNA downstream 144926 2048830 ~ 2049418 (-) True G189451
TU224223 lncRNA downstream 204189 1989519 ~ 1990155 (-) True G189412
TU224375 lncRNA upstream 69567 2280546 ~ 2280753 (-) True G189547
TU224575 lncRNA upstream 183047 2394026 ~ 2399476 (-) True G189702
TU224592 lncRNA upstream 380258 2591237 ~ 2609773 (-) False smarcd2
TU224598 lncRNA upstream 392214 2603193 ~ 2604096 (-) True G189717
TU224599 lncRNA upstream 392214 2603193 ~ 2604043 (-) False G189717
XM_034309400.1 mRNA downstream 22653 2166426 ~ 2171691 (-) True psme2
XM_026928000.2 mRNA downstream 62102 2124735 ~ 2132242 (-) False LOC113534974
XM_034309391.1 mRNA downstream 62874 2124735 ~ 2131470 (-) True LOC113534974
XM_034309385.1 mRNA downstream 71072 2119202 ~ 2123272 (-) False buc2l
XM_026928003.2 mRNA downstream 71072 2119202 ~ 2123272 (-) False buc2l
XM_026947891.2 mRNA upstream 4422 2215401 ~ 2224300 (-) False emc9
XM_026947892.2 mRNA upstream 4422 2215401 ~ 2224300 (-) True emc9
XM_034309553.1 mRNA upstream 32896 2243875 ~ 2245715 (-) True LOC117598663
XM_034309487.1 mRNA upstream 34815 2245794 ~ 2269055 (-) False LOC117598634
XM_034309486.1 mRNA upstream 34815 2245794 ~ 2269055 (-) True LOC117598634
TU223956 other downstream 623271 1568286 ~ 1571073 (-) True G189199
TU223922 other downstream 629084 1564890 ~ 1565260 (-) True G189180
TU224780 other upstream 582067 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other upstream 589097 2800076 ~ 2805906 (-) False LOC113547504
TU224811 other upstream 641076 2852055 ~ 2855493 (-) True ndufa4
trnap-cgg_2 other upstream 2687795 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 2688987 4899966 ~ 4900037 (-) True trnap-agg_2

Expression Profile