Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026947856.2 |
| length | 6656 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 27 |
| gene id | erbb2 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 2924595 ~ 2952904 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0032285 | non-myelinated axon ensheathment | biological_process |
| GO:0060347 | heart trabecula formation | biological_process |
| GO:0001755 | neural crest cell migration | biological_process |
| GO:0060973 | cell migration involved in heart development | biological_process |
| GO:0001837 | epithelial to mesenchymal transition | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0031101 | fin regeneration | biological_process |
| GO:0014044 | Schwann cell development | biological_process |
| GO:0048914 | myelination of anterior lateral line nerve axons | biological_process |
| GO:0048919 | posterior lateral line neuromast development | biological_process |
| GO:0048932 | myelination of posterior lateral line nerve axons | biological_process |
| GO:0007413 | axonal fasciculation | biological_process |
| GO:0007169 | transmembrane receptor protein tyrosine kinase signaling pathway | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004714 | transmembrane receptor protein tyrosine kinase activity | molecular_function |
| GO:0004716 | obsolete signal transducer, downstream of receptor, with protein tyrosine kinase activity | molecular_function |
| id | description |
|---|---|
| K05083 | ERBB2, HER2, CD340; receptor tyrosine-protein kinase erbB-2 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU224982 | lncRNA | downstream | 13340 | 2911012 ~ 2911255 (-) | True | G190048 |
| TU224779 | lncRNA | downstream | 96788 | 2796507 ~ 2827807 (-) | True | G189882 |
| TU224786 | lncRNA | downstream | 114676 | 2806601 ~ 2809919 (-) | False | LOC113547504 |
| TU224782 | lncRNA | downstream | 121631 | 2792827 ~ 2802964 (-) | True | G189885 |
| TU224787 | lncRNA | downstream | 125926 | 2798240 ~ 2798669 (-) | False | LOC113547504 |
| TU225014 | lncRNA | upstream | 124127 | 3077031 ~ 3077290 (-) | True | G190076 |
| TU225033 | lncRNA | upstream | 203007 | 3155911 ~ 3156150 (-) | True | G190094 |
| TU225036 | lncRNA | upstream | 217979 | 3170883 ~ 3171571 (-) | True | G190097 |
| TU225038 | lncRNA | upstream | 220156 | 3173060 ~ 3173967 (-) | True | G190099 |
| TU225044 | lncRNA | upstream | 221173 | 3174077 ~ 3175635 (-) | True | G190100 |
| XM_026947845.2 | mRNA | downstream | 28247 | 2874516 ~ 2896348 (-) | True | pth3r |
| XM_026947848.2 | mRNA | downstream | 59606 | 2856236 ~ 2864989 (-) | True | rundc3ab |
| XM_026947900.2 | mRNA | downstream | 69233 | 2852055 ~ 2855362 (-) | False | ndufa4 |
| XM_034309351.1 | mRNA | downstream | 96843 | 2813366 ~ 2827752 (-) | True | LOC117598559 |
| XM_034309629.1 | mRNA | downstream | 113204 | 2786081 ~ 2811391 (-) | True | LOC113547504 |
| XM_026947911.2 | mRNA | upstream | 4535 | 2957439 ~ 2967729 (-) | True | pgap3 |
| XM_026947919.2 | mRNA | upstream | 18426 | 2971330 ~ 2975144 (-) | True | mylpfb |
| XM_026947824.2 | mRNA | upstream | 26402 | 2979306 ~ 2982750 (-) | True | LOC113547471 |
| XM_026947826.2 | mRNA | upstream | 26402 | 2979306 ~ 2982742 (-) | False | LOC113547471 |
| XM_026947865.2 | mRNA | upstream | 32754 | 2985658 ~ 2989177 (-) | True | LOC113547497 |
| TU224811 | other | downstream | 69102 | 2852055 ~ 2855493 (-) | True | ndufa4 |
| TU224780 | other | downstream | 110015 | 2793046 ~ 2814580 (-) | False | LOC117598559 |
| TU224784 | other | downstream | 118689 | 2800076 ~ 2805906 (-) | False | LOC113547504 |
| XR_003404831.2 | other | downstream | 713616 | 2194987 ~ 2210979 (-) | False | LOC113547489 |
| TU223956 | other | downstream | 1353522 | 1568286 ~ 1571073 (-) | True | G189199 |
| trnap-cgg_2 | other | upstream | 1945870 | 4898774 ~ 4898845 (-) | True | trnap-cgg_2 |
| trnap-agg_2 | other | upstream | 1947062 | 4899966 ~ 4900037 (-) | True | trnap-agg_2 |
| trnap-ugg_3 | other | upstream | 1948232 | 4901136 ~ 4901207 (-) | True | trnap-ugg_3 |
| trnap-ugg_4 | other | upstream | 1949424 | 4902328 ~ 4902399 (-) | True | trnap-ugg_4 |
| trnap-ugg_5 | other | upstream | 1950717 | 4903621 ~ 4903691 (-) | True | trnap-ugg_5 |
