RNA id: XM_026947867.2


Basic Information

Item Value
RNA id XM_026947867.2
length 1016
RNA type mRNA
GC content 0.55
exon number 2
gene id LOC113547499
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2996966 ~ 2998281 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTTCCTGGATGCCGACAATAACAAGCTCCGCCGAAATGCGTCAGTCGTAAAGATTTAGTGATAAATAAAACGACtgtatttttgtgtctttttcaaAACAACGCACGTGCCATCGTATGTGAAAACCAGTACTCTTATTTTCCAGTCTCGAGCCAGCTGCGTTAAACTCCGGAGTGAAATAAATACatctatatttacatatttctccGGCAACACGAATCggtgggtttttgtttgtttgtttgtttgtttatttgtgcgGGGATGGAGATGTCTAAAGCGGAGCGGCTGAACGAGCGCGTGAGCGAGCTGCTGACGGCGGCGGTGCAGCGCGTGCTGGAGGCGGTGCGGGACACGGTGCGGGAGTACGAGGAGAAGAGCGCGCAGACGCAGAGGGAGAACGAGAGACTGCGGAGGAGAGTGCAGGAGCTGCAGGACCAGCTGGACAGGGACACCGCAGTTTCCCACATCACTGCCCAGCTCACTGTTTCTCCTCCTCCCACTTCATCTGGCCAGAAGAAACCGTCATGCAGTCGTCAGTCGGACACGATGGCACCGAAAGACAAGCCGTGTTTCAAAGAGGAACCTCCCAATGACGCGCAAAACGGTTTGTTTCCCGCcgaaataaaaactgaaatggaACAGTCAGACTATCCAGCTGCAGAGGAACCCGTGCTGGAACCCGTTCTCCAAAACACCTACTTCCCCTGCGCACATTTGCAGTACCACGCGTCTCAGAGCGAGCCGGACTTCCCCGCAGCACCTCCGCAACAACGCGGACACTCTGGACACCTTCGTGGAGCATTTCCCCTTCGAGGAAGATGGCTGGAGACAGCAGAGCCGGGACGAGCGCCACGTCTGCCTTCTGTGTGGGAAAAACTTTAACCGACTCGCCAACCTCCGCATCCACCAGCGCTGCCACACGGGGGAGAAGCCGTACACGTGCTCGCACTGCGGCCGGCGCTTCAGCCACAGCGGAAACCTGCAGAAACACAAGCGCGTGCACACGGGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224982 lncRNA downstream 85711 2911012 ~ 2911255 (-) True G190048
TU224779 lncRNA downstream 169159 2796507 ~ 2827807 (-) True G189882
TU224786 lncRNA downstream 187047 2806601 ~ 2809919 (-) False LOC113547504
TU224782 lncRNA downstream 194002 2792827 ~ 2802964 (-) True G189885
TU225014 lncRNA upstream 78750 3077031 ~ 3077290 (-) True G190076
TU225033 lncRNA upstream 157630 3155911 ~ 3156150 (-) True G190094
TU225036 lncRNA upstream 172602 3170883 ~ 3171571 (-) True G190097
TU225038 lncRNA upstream 174779 3173060 ~ 3173967 (-) True G190099
TU225044 lncRNA upstream 175796 3174077 ~ 3175635 (-) True G190100
XM_026947865.2 mRNA downstream 7789 2985658 ~ 2989177 (-) True LOC113547497
XM_026947824.2 mRNA downstream 14216 2979306 ~ 2982750 (-) True LOC113547471
XM_026947826.2 mRNA downstream 14224 2979306 ~ 2982742 (-) False LOC113547471
XM_026947919.2 mRNA downstream 21822 2971330 ~ 2975144 (-) True mylpfb
XM_026947911.2 mRNA downstream 29237 2957439 ~ 2967729 (-) True pgap3
XM_026947866.2 mRNA upstream 9984 3008265 ~ 3020759 (-) True LOC113547498
XM_026947854.2 mRNA upstream 34767 3033048 ~ 3068141 (-) False LOC113547488
XM_026947853.2 mRNA upstream 34767 3033048 ~ 3068141 (-) True LOC113547488
XM_026947881.2 mRNA upstream 108904 3107185 ~ 3118064 (-) True LOC113547508
XM_034309530.1 mRNA upstream 138853 3137134 ~ 3151456 (-) False atp2a1l
TU224811 other downstream 141473 2852055 ~ 2855493 (-) True ndufa4
TU224780 other downstream 182386 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other downstream 191060 2800076 ~ 2805906 (-) False LOC113547504
XR_003404831.2 other downstream 785987 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 1425893 1568286 ~ 1571073 (-) True G189199
trnap-cgg_2 other upstream 1900493 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 1901685 4899966 ~ 4900037 (-) True trnap-agg_2
trnap-ugg_3 other upstream 1902855 4901136 ~ 4901207 (-) True trnap-ugg_3
trnap-ugg_4 other upstream 1904047 4902328 ~ 4902399 (-) True trnap-ugg_4
trnap-ugg_5 other upstream 1905340 4903621 ~ 4903691 (-) True trnap-ugg_5

Expression Profile