RNA id: XM_034309412.1


Basic Information

Item Value
RNA id XM_034309412.1
length 2962
RNA type mRNA
GC content 0.49
exon number 13
gene id mpp2b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2531080 ~ 2574774 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTTTGGCATTTTCCTACATACTGTTCGAGTTTGAGAAGCTTTGAGTTATTCGAGTTATTAAAGGTACATTACTCAAAATTGGTGCACAAACTGCTCGGTAGATGATGTACACCATCAtcggaatgttttttttttactcacgcCCATTTACATGAAGCTCTGCCTCCAGAATCTACTGTGTCCAACGAGGTTGCCAAGAAAGCCCAGAAGTCCCAAGATACCAGCCATGCCTGTTGCATCATCCAGCTCTGACTCAGCGATGCACAGCGTCGTGGACACACTGAGTGACAGCACCGGCTCCACCACGGCCAATGATCTAGACCTCATCTTCCTGAAGGGCATCATGGAGAGCCCTGTGGCCCATGAGCGATTCGAGGAGCCGAAGCTGGAGGCAGTGAGGGAGAACAATGTGGAACTGGTGCAGGACATCCTGAAAGATCTCACACCGCTCACCCAACAGAGCCAGGCAGCACACGAACTTGCCCGGATACTCAGTGAGCCACACtttcagTCCCTGCTGGAAACACACGACTCTGTAGCTTCCAAAAGCTACGAGACTCCACCACCCAGCCCCTGTGTCTTCATGGACCCTGCCCTCAACAACCAGCCCGTCCCTCCCGATGCTGTCAGGATGGTCGGCATACGCAAAGTCTCTGGAGAACATCTGGGCGTGACGTTCCGTGTGGAGGGCGGCGAGCTGGTGATCGCGCGCATCCTGCATGGTGGTATGATCGATCAGCAGGGCCTCCTGCATGTCGGTGATGTCATCAAAGAGGTCAACGGGAAGGAGGTGGGCAGCGACCCCAAAGTGCTGCAGGACATGCTAAAGGAAGCCAGTGGCAGCGTCGTGCTCAAGATCCTGCCCAGCTACCAGGAACCACACACACCCCGCCAGgcatTTGTGAAATGCCACTTTGATTACGACCCCGCTCACGATAATCTGATTCCCTGCAAGGAGGCTGGCCTTCGGTTCCACAGTGGCGAAATCCTGCAGATCTTCAACCAGGATGATCCCAACTGGTGGCAGGCGTGTCACCTGGAGGGCGGCAGCGCAGGTCTGATCCCCAGCCAGCTGctggaggagaagagaaaagcgTTCGTGAAGAGAGACCTGGAGCTAAACACAGCAGGACCTCTGTGTGCAGGCATGggggggaagaagaagaagagaatgaTGTACCTGACCACCAAGAATGCAGAGTTTGACAGACACGAGCTGCTGATCTACGAGGAGGTGGCGAAGGTGCCGCCGTTCCGGAGAAAGACTCTGGTGCTGATCGGCGCTCAGGGAGTCGGACGCCGCAACCTGAAAAACAAGCTGCTGATGTCACAACCTCATCGCTACGGCACCACGACACCCTACACGTCCCGTAAGCCCAAAGTGGACGAGAAGGAGGGACAGATGTACCTGTTCATGTCACGCAGTGAGATGGAGGCGGACATTAAGAGCGGCCGCTTCCTGGAGCACGGCGAGTACGACGGGAACCTGTACGGCACCAAGATCAACTCCATCCACGAGGTGATCGAGTCGGGCAAAGTCTGCATCCTGGACGTCAACCCACAGGCTCTCAAAGTGCTGCGGACGGCCGAGTTCCTGCCCTACGTCGTGTTCATCGAAGCCCCCGACTTTGAAGTTCTCAAGGACATGAACAGATCTGCGATCGAGGCTGGAGTCGTCACCAAACAGCTCACTgactgCGAGCTGAAGAGGACGGTGGAGGAGAGCGAGAGGATCCAGAGAGCTTACGGTCACTACTTCGACCTCACCATCGTCAACGATAACCTGGACGGCGCGTATCGCAGCCTGAAGGGGGCGCTAGAGAGACTGAGCACCGAGCACCAGTGGGTTCCTGTGAGCTGGGTTTTCTGAGCCCCACTAAgcttcatatatttatattagagTGCGGTGAAATGTGAGCAGCTCGTAAATAAACCTAGAAAACTAGAAATGAACCTAGGAACAGTAATGTTTAAATACtaccaaaaacacacagttttttttttttttcatggcaaTTATATTGACACAAAtctatttttaacaaaaataaggCATAAGATTCTGGGAATCGGCGTGTGATCTTGGATGTATATTTACCGATACCTGTTATGCGCCCTCTAGTGGTCACGCAGTTTACCTAACATTTAAAGATGGCCGCTCACGCAGGCTAGGCTTGTGCGATTATAAAGATTTAATCATTCCTGTACGATCTTACACTGCCACAATGTCCAGGTACATTCATTCTGCTAATATGATCTTTCTAATCGTACATGTTTACCATTTAACTCTCGAATTGCCCTCTTAATGACCTCATCGGCTTTAATTGCGATAAGAAAATGGCGGACGCGAAAGGAAAATGGTCACGTTCTAATCAAGGGTCGACCCTCCAAGGTCGTCACACTATAAATCTTAGGAATGACCGAAAAATCCACCATCCTGCTGAGTTTTCCGAATTGTCACTGCCAACAAGCAGTTCCTGACCTACTTCTCTATTCACAACCCCTCGATCATGGGGAGCCTTCATCAACTCCACAAAGGAGCAGCTGGAGGTGGACAGTAAGGCCAGCTTGATTGGTTGCCGTACAGAAACGTGCTGCAGCGGTGATGTCCGAGTTGCGATAAGAAAATGGCTTTAGGTtcgttaattttttttttttttttaatgataaatcaCGAGCAGGAATCACAAAAATATCTCACAAGCCTAGTGCATGCTTTCACAAATGTCGTAAACATGTTTTTGTCCGTAAGGCttgttcattgtttttgttttattccacttttttttttttttttttttaatattattgatGGAGTAACGCTAccaaaatgatttgtttattttatttcagaatgtttttttgtgattaaTCATTACACGATCACATTGAAGTCAaagtgggaagaaaaaaaacgaaTAAATTGGTATACTAACCAAAATATTTACACGATGCTGTAA

Function

GO: NA

KEGG:

id description
K24048 MPP2_6; MAGUK p55 subfamily member 2/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224528 lncRNA upstream 14618 2525056 ~ 2528820 (+) True pyyb
TU224401 lncRNA upstream 225131 2317318 ~ 2318307 (+) True G189570
TU224394 lncRNA upstream 234020 2308226 ~ 2309418 (+) True G189563
TU224386 lncRNA upstream 248133 2295086 ~ 2295305 (+) True G189555
TU224296 lncRNA upstream 397682 2143152 ~ 2145756 (+) True G189477
TU224489 lncRNA downstream 16464 2591238 ~ 2609497 (+) True G189626
TU224549 lncRNA downstream 31109 2605883 ~ 2608078 (+) True G189678
TU224557 lncRNA downstream 39923 2614697 ~ 2615755 (+) True G189684
XR_003404829.2 lncRNA downstream 67067 2641841 ~ 2644184 (+) True LOC113547470
TU224817 lncRNA downstream 299381 2874155 ~ 2875297 (+) True G189916
XM_026947882.2 mRNA upstream 14721 2525118 ~ 2528717 (+) False pyyb
XM_034309634.1 mRNA upstream 28184 2503394 ~ 2515254 (+) True tut1
XM_026947816.2 mRNA upstream 28184 2503394 ~ 2515254 (+) False tut1
XM_034309331.1 mRNA upstream 40608 2489814 ~ 2502830 (+) False mki67
XM_026947904.2 mRNA downstream 82086 2656860 ~ 2697247 (+) True ngfrb
XM_026947846.2 mRNA downstream 324115 2898889 ~ 2906026 (+) True LOC113547481
XM_026947842.2 mRNA downstream 331380 2906154 ~ 2923348 (+) True LOC113547478
XM_034309597.1 mRNA downstream 331380 2906154 ~ 2923348 (+) False LOC113547478
XM_034309596.1 mRNA downstream 331380 2906154 ~ 2923348 (+) False LOC113547478
TU223925 other upstream 878101 1663092 ~ 1665337 (+) False LOC117598477
XR_003403557.2 other upstream 2323070 137521 ~ 220368 (+) False ccser2b
TU224759 other downstream 185919 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 395351 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 395351 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 663670 3238444 ~ 3239216 (+) True G190028
TU225191 other downstream 826493 3401267 ~ 3405009 (+) True G190212

Expression Profile