RNA id: XM_034309340.1


Basic Information

Item Value
RNA id XM_034309340.1
length 6830
RNA type mRNA
GC content 0.47
exon number 16
gene id med1
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3330026 ~ 3352549 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAGTTGAGTGGTGACTCctgaatgattatttattaaacagagTGCACACTACACAGAGTGCTGCTGTTTCTTATGTGTAGGATATGTTAGGAACAGGGAGCCGAATCCTACATTACTCTGTATAGTACATATTCACTACACAGGATGGAGCCATTATACAGCACTATGTAATGCATCTTgatggaaagaagaaaataagttATGAATGACGTAGACGTGAAAGGAACTGAATCCTAAACGATTCTGTGTTGGACTTGTATTGCAGTACACTTTCTATCATAAAATGTTCCTTATTGGGTGTAAAGTCTGTCATCACAAATATGAAGGGGCCCCAAGTGTTTTGGTATGTTAAGTAGTGCAGCTCGACATTGTGGGCCAACAGATCGATGTCAGAAATGGTAGCGATCTCTATCGATGGAGAAAACCATGTAGTGAGAGattgagaaggagagagacaaaagaaacAGGATTAGAGATAATGGAGGGAgagactgtgagagagagagagagagataggggtGTTGGGAGGGACAGAGACAAGACACAAATGGTTTTCTGTTGCCCATCATTTTTATGCTCGATATAAACATCAGAAATGATTGGACaATCGGAGAAGCAGAGTCGTGTTTCTGCTCTGCTGGAGAGGCTGCACGCCAAACACAACGCCTCACGGCCATGGCAGGAAACCAGCAAAGTTGTCCGCACagccatggagaagCGTGGTGTGATGAACTCGGCCGGTCACCAACTCCTGCTGAACTGTTTAGAGACGCTTCAGAGGGCACTTAAAGTGTCCTCACTGGCATCTATGACCGATCGCCTGGAGTCCATCGCTCGTCAGAATATGTTGGGGTCACACTTGAGTCCCTCGGAGACAGAATGCTACATCACCTCTGACATGTTCTATGTAGAAGTGCAGCTTGACACTATGGGCCAACTGATCGACGTCAAAGTGGCTCATCACGGAGAAAACCCTGCGAGCTGTCCTGAGCTCATACAGCATCTGAGagagaaaaactttGAGGAATTCTCCAAACACCTGAAGGGTCTTGTGAACCTGTACAAGCTTCCTGGAGACAACAAACTGAAGACTAAAATGTACCTGGCCCTGCAGTCTCTGGAGCTGGACCTTACTAAGATGATGCACATGTTCAGGATAGCTACGAAGGCTAACACGGTGGAGACGATCCTGCACGGCAGTGTGGGTCTGCTCACTCCAAGGAGCGGCGGCCATCTTCTGTCCCTGCAGTGCTATGTCTCGCCTTATGACATTTTTGAGGAGGGAACCGGCGCTCAGCTCAACTTCACCGACACAACCAtcCCTCGTTCTCTCGGAGTGGGCGTGTCTGTGACTGTGGAGGGAACATCATCTGTCTACAAACTTCCCATCGCTCCTCTCATCACCGGATCTCACCCAGTGGATAACAAAGGGACTCCGACATTTTCTCCAGCGTCGAACTCTAACTGTGTAGACCTGCCAGCCTGTTTCTTCCTGAAGATGAAGCGGCCCATGCCCTTCTCACTGGCCTTCATTCACAAAATGAGCAGCATTACAGGTATCCCAGTGTTTGAGTCAGTACCTGCCTTGTCCCCACTCTATGATCTCATCATTAAAAGCAAGCTTGGTGAAGACGATGGCAGCAATGCTCCAGCGTCGGCTCGGTTCATGAGATTTTACGCATCTCTGCCAGGACAACAGCACTGCTACTTTCTGAATGGAGATGCCCCAGTGCAGGATGGGAAATCTCTGCAGGGAGTGCTGGTGTCCAAAATCCCCTTTCGACACCCTGCTCACGTGCCCTCTCTGCTGGACATTATACGACACCAAGCAGCTTATAACACACTGATCGGCAGCTGTGTCAAAAAGACCTACATAAAGGAAGATACCCCTGGGCTGCTGCAGTTTGAGGTCTGTCCACTGACAGACTCCAGCTTCAGCGTTTCCTTCCAGCATCCTGTCAATGAGTCTCTCGTCTGTGtTGTAATGGAGGTAATTGACTCACGGCAGGTAGTGTGTAAGCTGTATAAGGGTTTGTCTGATGCTTTGATCTGCACAGATGAATTCATTACCAAGGTGGTTCAGCGATGCATGTCCATCCCTGTGACAATGCGAGCTATCCGTCGCAAGGCAGAGACGATACAGGCAGACACCCCAGCCTTATCCCTAATAGCTGAAACTGTGGAGATAATGGTGAAAAAGAACCTTCCGCCCACAGGTAGCCCTGGTTACATGGGGATGGGCGCAGGACCTGATGGGAGCAACACTGTGGGCCTGCCTAGTGTAGGGGGTGCTACTACACCTACAGGAGGCAGTAGCGCTGGCAATTTGGGTGCAAGTGGGCCATTCCAAGGCGCAATCAGCTCTCTTTTCAACATGAGTCACCAGGGAGGTTCAGTTGTGGACACTATGGGGCAGATATCaagtcagcagcagcagctacagcagcagctcccACCACAGCACAGCCATGGTTCAGATGATTTTAGCAAGGTGACTCAGAACCCAATACTCACAAGTCTTCTCAAGATAACAGGAAGTGTAGGGTCTAGTCCCACTCCCCAGGGCTCTGCTGGCTCACAGCCACACCAGACCCCACCACCGACCACCTCACCTGCTAGCAATACCAAAAACCATCCCATGCTGATGAACTTGTTGAAGGACAACCCCTCACAGGACTTTGCTGCCCTGTATGGTAGCAGCCCTCTGGAGAGACAAAACTCTTCTGGTTCTCCTCGCACAGACAGCCAAGGTCAGCCATGTCCTGGAGGAGGCACCAAAAGCAAGAAGAAGCGACCAAGGGGCACGGATAAGGGTGTGATGGGAACAGGGGGAGGCATGGGAATGAAACAGCAATCCCAGCAACAGCAGTTGGGAAACATAAGCCAGcagcaccatcacacacacccccccaCTGAAGATGATTTCCACCGTGAGCTTTTTTCCATGGATGTTGATGCCTCTCAGAATCCCATTTTTGATGTCAATCTTCCAGGTGATGGGTTGGACACTCCTCACAGTATCACTCCAGCTCCAAGCCAATGTGGGACCCCACCTTCAGGTCCTGGAATGTCATACCACCCACAGTCACATGTCCAGTCTCAGACACAAGCTCAGTCGCAGACGCCAGGGTCTATACCTCGCATGGTACGCCTCTCTAGCTCTGAAAGTATTGGTCCtgacattaatgacattttgtCTGATATTCCTGATTCAGCCACCAAAGGGAGTGGCGGCAGCCATGGGCAGCATCACATGGGTGGGGAAGAAGGAGCTTCCCTGGACACTCCACTAAGGGATTCCTCTAGCTCAGGTCAGGGTAGTGCAGTATTTGAGGCCGACCTGTTTAATGCCAACAGCAATGAAAACACTTACACTGATCCAGCAGATCTGATTGCAGAGGCTGCTACTGCAGCTACGCCAAATAGTGATGCCTCCTCGAGTAATTTCTTCCCAGATACAGACTTCAACCCTGAGTTGCTGCCTGGTCAGGGAACCTTCTCACATACAAGTTATTTTGATGAAAGTTCACCCAGTCCAGAGCCAGATCTTGACCTTGTGAAGAGCTTCAGTGGGGGAAGTCAGCAGAATACACCCTCAGGCACCCCTCAGAATCCAACTTCGCATGGCCGTAGCACACCTGATGCCTCTCTAAAGGACCCTTTTGATGTTAGTATGGTTTTTAGTGGGAACAGTGGAGGAGGAAAACCTTTGCTAGGCCCAGGGCCAGATTTGGTTGATTCACATTCTCATGGAGGTGGTGGACAAAGTCCACTCACTATGGGCATGGCAGGAATTAGCAGTGACTTTAAAAGTAGTGAAGTAAAGGTCAAACAGCAACAGATGAGACCAAAGGAGGATAATGGGGGAGGTAACTCTGGGATGGTGATGGGAGGAACAGGCTCTTCTGAAGGAAAGCAGATGAAGCGTAGTCGCACACCTTCTAGTGAGggaaaatcaaaagaaaagcCACCCAAGCGTAAAAAGCTTGATCCAGAAGGCAAGTCTCCCTCACACAGCTCTGGGGGTCGACCCTATACCCCTCCAAGTGGGAGTGTCAGTTCTGGAGGTTCAATGAGTGGAGGTGGATCCAAATCCCCAGGCAGCTCAGGTCGTTCTCAGACCCCACCAGGAGGTGCCACCCCACCTATACCTAAAATCACAATACAAATCCCCAAAACCTTAACTGGGGGAAAAACATCTTCTCATGGAGGTTATACATCAAGCAGTTCAGCAGCTGGAAGTACCGGTGGTGCCAGTGGCACAAGCAGCAGCAAAAGCCACCATTCCCactcctcttcatcttcaggaaaAATAAAGACCAGCAAGATGGAAGGCTCCATGGGACAAGGTAACAGTTCTAAGCCACCGAATACAGGAGGAAGTGGGAGTGGCATGCTCCCTCAATCCAAAAGCTCTTCTCTCGGGATGGGTTCAGGCAAACCAGGCTCTTCTCCAATCACCAAGCATGGTATGTCGGGTTCAGGTAGCAGTGGCAGCAGTGGAGCAGTTAGTGGGAATAAAATGAGGCCCCAAGGAGGCAAGCCACCTGGATCACTGATAAACCCTAGCATTAAGCCTAATATTTCGCCTTCACACTCTCGGACTGGGAGTTCTGACAAACTTTCCTCCCCAATGAAACTTCAGCAAGGACAGGTTCCAGGAACACCACCATCCTCAAAAGCTAAGTCACCGATTGGTTCTGGAAGTGGGAGTTCAGGGGGGTCAAAGTCCTCTTCTGGTGGTGGGATGGGTTCCCAGAAACAGTTAGGAAGTGGTTCTTCCTCTggttcttcctcctcttccaccTCATCTGCTAGCTCTTCCTCTTCATCAGGCTCTATGTCATTTTCCTCTGGTGGTCAATCACAATATGGGGGAAGTGggggtggtggaggaggaggaagtggaggaggtGGGGGGAACAACCCTAATGCCAAGGGAAAGTCCCCTAGCCGAAACAAAAAGCCTTCCCTTACAGCAGTCATAGACAAGCTGAAGAGTGTTGGTAGTGGTGGTATTGGTGGGGAGGAGTGtgaaggaggtggaggaggtggtgcTGGCAGCAGTACAGGGAGTGGAGGTGGGGGGGTACCTCCAAATGCTGGTCCTCCAAAGCGGGACAAGGTTGAAAAAGAAGGGAAATCCAAAGGATCTCTTTCAACCGGAAACTCGGGTGATAAAAAGATCATTGACCCAAAAGGTAGTGGAGTGAGCAGCACTGGTGTGGCTAAGATTATCATAAGCAAACCTGATGGAGGTTCTCCAAGCATCAAGTCCAAAGTAACTCTCCAGAAGCCTGGTGACGGATCAGCAGAAGGTTCCATGCGCCCCCAGCATTCAGGCTTGAAAGCATCACCTCTTTTCAGTGGCTCAACACCAAAGCACGACCGCAGTTCCCCAAGCCACAGCCGCTCGCCTGGATACACACCTCTGTTCCCGGACAGTGAGAGCGAGTCAGGTAGCAGTTCAGTGGCAGAGAAATCCCATCAGAACAGCCCCAGCTCTGACGATGATCAGAGCATGAGGCCACTACAACCACCACAGGACTACATGTCAGTCAGTCTGGGAGAGAAACACAAGaagcacaaaaaagaaaagaaaaagcaaaaagaaagagagcggGAGAGGGAACGGGACAGGGACAGGGAtcgagagaaggagaagaagaaatcGACAATGTCCTGTGGTCCCTCTTCACATCCAATTAAGGTAGACAGCTGGTCCAGGTCTCCTCTGTCCTCCTCAGAACCTTCTATATCTTTGCTCAGCTCTGAGCGTTCCTCTCGACCGAGTCCTGTGTACATGCACACTGAGGATGATGACCTGATGGACTCTGCTCTAACTGGCTCTAACTTAGAACCTTTCAAATAGAGATTATCCCATGGGTATATTTAACATCTTTTTTGCATGGTATTTGGCACCTCTATGAAGGTTCTgccattttaaatattgaatattatgaTCATTCTTTTTAAACTGTAAGATTTTTAACAATATCAGATGGAGACACTGAGGCCATCCATTTTAGAAGAATAGGGTGGCATGCATTATGGTTTTGTACTTCACATATCTGCCACTGATTATGGATGCAAAAATAATCCTCCCAATACTGGTGATGAAAATATACACTGAAGTTCAACATGATAAACCTGtctaaaagtaaattatttgtaATGACTCATAGGTTGCATATTGATTTTATGTTTACTGTTTATCTAACGAAAAaatgtgctgtatttttaaaagacaatgtaaaaaaaaaaaaaaaaaaaaaaaaaggtcttctCTCTTGAAATGCTCCTTGTTTGTTGAAACCATGTCTTTTATAAGTGTTATTTTCTCGAAACATTTTAATACgttctttattcattttgtcGTGTAGTTTTAGGCTTTGTAGAGGAGTGTAATCAAGTGGATTAGAATTCCCTTCTTCATATGTAAATATGCAGGTCATTATACATGATCGAAATAAACTTTATTGGTgaattaaactttaattttaagTATGAAAAGTGTGCCATTTTTGGAAGTGTTTGACAGATTCCACCAGCAGGGGTCACAATGGAGTTATATTTGTATAGTTtgcacaaatataaaatactcaAGTGCTTTAATGAATAATGGCTAGTGAACGAAAGATCCTTATTCTGTCTTTGTATATAATACCTGTTTCTTAGAATCTGTTGGATGAAGACTATTATATTTCATAGtgcagctttatttttattaacactttaataaaaataataagaattcAGAATAATAAAGATTTTGGTGGTTATTCAGAGCCTTTTCAAGGAATATCTTTATATCATTACTGCCTTTAAG

Function

GO: NA

KEGG:

id description
K15144 MED1; mediator of RNA polymerase II transcription subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225044 lncRNA downstream 154393 3174077 ~ 3175635 (-) True G190100
TU225042 lncRNA downstream 154393 3174986 ~ 3175635 (-) False G190100
TU225039 lncRNA downstream 154393 3175074 ~ 3175635 (-) False G190100
TU225038 lncRNA downstream 156061 3173060 ~ 3173967 (-) True G190099
TU225036 lncRNA downstream 158457 3170883 ~ 3171571 (-) True G190097
TU225215 lncRNA upstream 75202 3427436 ~ 3427644 (-) True G190232
TU225293 lncRNA upstream 144895 3497129 ~ 3497399 (-) True G190304
XR_004579133.1 lncRNA upstream 183431 3535665 ~ 3536422 (-) True LOC117598465
TU225326 lncRNA upstream 263186 3615420 ~ 3632422 (-) True G190336
XR_004579273.1 lncRNA upstream 298792 3651026 ~ 3655610 (-) True LOC117598641
XM_034309048.1 mRNA downstream 8406 3278909 ~ 3321622 (-) False LOC113547465
XM_026947817.2 mRNA downstream 8409 3278909 ~ 3321619 (-) True LOC113547465
XM_026947818.2 mRNA downstream 8755 3278909 ~ 3321273 (-) False LOC113547465
XM_026947822.2 mRNA downstream 87385 3238419 ~ 3242643 (-) True LOC113547469
XM_034309531.1 mRNA downstream 96107 3222430 ~ 3233921 (-) True LOC113547516
XM_034309129.1 mRNA upstream 40310 3392544 ~ 3396061 (-) True neurod2
XM_026947852.2 mRNA upstream 40311 3392545 ~ 3396358 (-) False neurod2
XM_026934622.2 mRNA upstream 296134 3648368 ~ 3651024 (-) True LOC113539064
XM_026934964.2 mRNA upstream 432075 3784309 ~ 3785130 (-) True med9
XM_026934959.2 mRNA upstream 463713 3815947 ~ 3830814 (-) False LOC113539277
TU224811 other downstream 474535 2852055 ~ 2855493 (-) True ndufa4
TU224780 other downstream 515448 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other downstream 524122 2800076 ~ 2805906 (-) False LOC113547504
XR_003404831.2 other downstream 1119049 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 1758955 1568286 ~ 1571073 (-) True G189199
trnap-cgg_2 other upstream 1546540 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 1547732 4899966 ~ 4900037 (-) True trnap-agg_2
trnap-ugg_3 other upstream 1548902 4901136 ~ 4901207 (-) True trnap-ugg_3
trnap-ugg_4 other upstream 1550094 4902328 ~ 4902399 (-) True trnap-ugg_4
trnap-ugg_5 other upstream 1551387 4903621 ~ 4903691 (-) True trnap-ugg_5

Expression Profile