RNA id: XM_034309183.1


Basic Information

Item Value
RNA id XM_034309183.1
length 1876
RNA type mRNA
GC content 0.47
exon number 2
gene id lrrc3ca
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2270632 ~ 2287054 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTGGCTGGTGAAATAACTGGCAACCAGATTTTATACAGGCAGCTTAGAAAGATGGTCAGTGATCAGATGTTACAGTATATCAAGATGGAATGATCGCGACACCTCCTCTTGCCCCACGGATAGTGCTCTGAAGGGAGTATGCCCCCATTTCACCATGCCGATGCCGTCCTATTGGCTGCTCCGGCACTCCATGGTCATGTGCTTGCTTCTACACAGCTTGGTGTTGATGACGCTCTGCTTCCACCACGCAGCCACTTCCTGCTCAAAACACTGCTACTGCTCCGAGAGCGAGGGTCCGTCTGGGGGCAAGACCATGCGGTGCAGCAACCTACGCCTCACCGAGATCCCAAATGACATCCCGAATGACACACGGCGCCTCTACCTCGACTACAACATGCTGACCAGTGTCCCTGCCAATGCCTTTCAAGATCTTCCTCTGCTGGCTGAACTTGATCTTTCCCACAATGAGCTGGCACTGCTTGAGCCTGGAGCTTTCCGGGGCCTGGCTGCCTCCTTGCTATTCCTGGATCTGTCCTCCAACCAGCTGGTGACGCTGGATCCTGAAGCTTTTGAAGGCGTGAGGGCTCGATCCAATCTGACTGGCAACCCCTGGCACTGTGACTGTCGGTTACAGACGGCACTTCCACGCCTCGATCTGGAGCCTGTGTCTCTCACCGGCATTGTTTGCCAAACATCAGAGCCCGAGGACTCAGGTGCCCAAGGTGTGCCCTTTCTGCTGGCCAAAGACTTGGACCTATGCGTGGTGCTTAAAAAGACCACAGACGTGGCCATGCTAGTGACCATGTTTGGATGGTTCACCATGGTCATCTCCTACCTGGTCTACTACGTGCGGCATAATCAAGAAGATGCCAGGCGCCACCTGGAGTATCTCAAGTCTCTGCCCAGCAGGCAGGGCAAGTCTGAGGAGTCTTCCACCATTAGCACTGTGGTTTGACAGCAGACTGTCACTAAAGGGGGAAGCTTCTCAGGCAAGCAAAGGGCAATGGGCACACTCAGAGTCTAGCCTAGTAGAGGAACCAATAACTGGGTTATCATCTCTGGTAATAACAGGCTTTGTGGACTGCAGCTTTCCGGATCATCAGAAAGTGAAAGTAACCAGCcttcaaaaacaaacatggtgaCTTAGCAGCCGGAAAAATCCTGCCGCAAGTCTTCCATTTCAGACTCGAAGGTAAAGACAAACCCTCCTTGGGAACCTACATGCCAGCATAGCAAGAGAATTGCAGGGGTCATCTAATCTTATCCAGATAAATAATTGATCCAGGACCGGCCAGGCTCCAAGTCTGCAGTGGCTGAGTGGTTTGTCTGCTCAGAATGCTTTTGAAATAGGACGGGTTTTTACTTTCCTCCACATTCCTCTAGTTATTTTTGAAAGGATCCCCATTTATTTGCAGGAGCATGTAGCATAAAGAAAGCACTCTCTTCCATTATGGCATTAACATGAAAAGCTCTTATATTTATCCCTCCAGACTACATTCAGTTTTATAACAGAGCCACGCATAAACATACACTTCAGTCATTTTTAGGATTCTGAATAAATGGTGAAAATCAGTGTgtatattttgataattttgtAATGGAACTAATCATATTGAAACAAAGGTGAAGGACACTAGCTGGTCCGGTATTTTCCAGCTCTTTCAGGGGAAATTACCACATGagcaaaatgctgtttttttgttgtttttttttacttttttttttcttaatgatgaaatatacagtacatcgaTCACACTGAATACAGTAATTGATTGTGTTGTTCCCAGTCCTGGTCCTGGAATTTCCCTGAATATTTTAGCACTTTTCCTGTTCTAACAGCATTAATCCAACGAATTAAAGCCAAACACtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224296 lncRNA upstream 139313 2143152 ~ 2145756 (+) True G189477
TU224099 lncRNA upstream 344813 1939952 ~ 1940256 (+) False LOC117598558
XR_004579220.1 lncRNA upstream 359365 1923984 ~ 1925704 (+) True LOC117598584
TU224074 lncRNA upstream 359390 1924023 ~ 1925679 (+) False LOC117598584
TU224082 lncRNA upstream 397199 1887650 ~ 1887870 (+) True G189293
TU224386 lncRNA downstream 8032 2295086 ~ 2295305 (+) True G189555
TU224394 lncRNA downstream 21172 2308226 ~ 2309418 (+) True G189563
TU224401 lncRNA downstream 30264 2317318 ~ 2318307 (+) True G189570
TU224528 lncRNA downstream 238002 2525056 ~ 2528820 (+) True pyyb
TU224489 lncRNA downstream 304184 2591238 ~ 2609497 (+) True G189626
XM_026947887.2 mRNA upstream 100871 2173539 ~ 2184198 (+) True irf9
XM_034309402.1 mRNA upstream 119288 2163174 ~ 2165781 (+) True lsm5
XM_034309389.1 mRNA upstream 122496 2147896 ~ 2162573 (+) True avl9
XM_034309390.1 mRNA upstream 122496 2147896 ~ 2162573 (+) False avl9
XM_026928137.2 mRNA upstream 142117 2135179 ~ 2142952 (+) False kbtbd2
XM_026947910.2 mRNA downstream 15179 2302233 ~ 2304287 (+) True LOC113547531
XM_034309548.1 mRNA downstream 59991 2347045 ~ 2361095 (+) True top2a
XM_034309547.1 mRNA downstream 59991 2347045 ~ 2361095 (+) False top2a
XM_026947897.2 mRNA downstream 107022 2394076 ~ 2486796 (+) True raraa
XM_026947899.2 mRNA downstream 179604 2466658 ~ 2486796 (+) False raraa
TU223925 other upstream 619732 1663092 ~ 1665337 (+) False LOC117598477
XR_003403557.2 other upstream 2064701 137521 ~ 220368 (+) False ccser2b
TU224759 other downstream 473639 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 683071 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 683071 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 951390 3238444 ~ 3239216 (+) True G190028
TU225191 other downstream 1114213 3401267 ~ 3405009 (+) True G190212

Expression Profile