RNA id: XM_034309531.1


Basic Information

Item Value
RNA id XM_034309531.1
length 3594
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC113547516
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3222430 ~ 3233921 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGTAGATACCGGAAGTGTTTGTAATTTTATACTTATTTGAATTAGAAACGTGAATTTACAGGTACAGTTAAGGTGTCAGCTTGTTTCTACTGGctaatgttcacacactttgagccttatcatgatattttttaaattttgttttgcGTAAAATATCCCAATAGGAGTGTGATCTGTAACTTTTACACAGAACAGTGCCCTTACTAGTTTAGTGTACATGGATGTGTATTAGAACACAGCCGCCGTCTGGAGCCGCTGCAACAGGAAAAGGGGGCGGGGAGGAAGAGGGAACAAGGCCACGCCCATTTCGTCCACAGCAGCCGCGCGCGCCGTCTGGGAATAACGGTACAAGCCTGAAGAGTCGCGCGCGAGCCGTTAGGAATAACGGGCAAGTTCACGAGCGCGAACGTTAAAGCGGAAATCCTGCATATTAACGCCGTTTTTTTACTCTGAGGAGTGAAGATGGATGATTTGGgagaGCCTGACTCGTCTAACTACCCTCTCAGTCCCCGTATTGTCGTGTTTGatgctcTCCTGGCCGATCTGGAAAGCTCTGCTTCTCCTCTCGCTCGGTGCCCTGTCCTATTGACCTCTGACCCTccagtgacctctgacccctcaCCCACATGCAACCAAGACGCCGCTCAGAACCGGCCTCCTCCGCCTGCATACACACCTCAGCAGACAGTTTCAGCTGCCATGAAGTCCAACGGCTCTCAGAACCCAGACAAGCTTTACAGCACGGTGTGTAAGCCTCGTTCTCCGCGCTCTCCTGACCCTCCTCCTGCGTTCTCGTCCTCATCGGTGTTGGGTGGAGGCCTGAGTGAACTGGACCACCTGCTGCAGGAGCTCAACGCCACGCAGTTCAACATcaccgATGAGATTCTGGCTCAGTTCCCTACGACTAAGAAGGAAGACAAGGACAAGGAGAAATCAGGAAAGTCGGCTCCCTCCACTGGgtcaGTGAAACCCTCCGCCACTTCGGCCACTCTGGAACTGGACAAACTGATGGCGTCTCTGTCAGATTTCCGTGTGCAGAGTGTGCCGGCAGCTCAGGCCAATCCTGCACCTGTGCAGCAGCCAGTGTCCCCGCCCCCGGCGTCCTCCGGCGGCTCACTGGACAGTATGCTGGGCCTCCTCCAATCAGATCTGAGCAGGCAGGGAGTGTCCACTTCGTCCAAGGGAAACTGCTCCGCCTGCCAGAAACCGATTGTGGGACAGGTGGTGACGGCACTGGGGCGGGTGTGGCACCCCGAACACTTTGTGTGCTCCGAGTGTGAATGTGAACTGGGGAACCGTAACTTCTTTGAGAAGGACGGGCGTCCGTACTGCGAGCCGGATTACTTCAGCCTGTACTCGCCTCACTGCGCACACTGCAATAAACCCATCCTCAATAAAATGGTCACAGCTCTCGATAAGAACTGGCATCCCGAGTGCTTCTGCTGTGTGAAGTGCAGCCGGACTTTCGGAGATGAAGGGTTTCATGACCGTGAGGGACAGCAGTACTGTCAGCAGTGTTTTCTGGCGCTGTTTGCGTCGCGTTGTGAAGGCTGCTCTCAGCCCATCGTGGAGAATTACATCTCCGCCCTCAACGCCCTGTGGCACCCGCAGTGCTTCGTCTGCAGGGAGTGTTTCAGCCCTTTTGTGAACGGAAGCTTCTTCGAGCACGAGGGCCAGCCGCTGTGTGAGGCGCACTATCACCAGTCTCGCGGCAGCGTGTGTCAGGCGTGCCAGCAGCCCATCGTAGGACGCTGCGTCACCGCCATGGGTGCTAAGTTCCACCCGCAGCACCTAGTGTGTCAGTTCTGCCTTAAACCTCTGAGCAAAGGCTGCTTCAAGGAGCAGGACAACAAGCCCTACTGCCACCCGTGTTTCCTCAAGCTCTTCGGCTGAATTTAAAACGGGGATGTCCAGTACATTCACCATAGGAAGCTTTACAAAGTCAATATTATCTTGCATCTTTTATCcttatttaaaaatcagtaatgtgcaaaagaacaaaaacaagtgCAATTTTATAGAGTCAAGtcatatccaaaaaaaaagcatttttataaaatgagGAAGTGCTCCAAACACATTTCAGTGATGCAGAAGAGACGaaacaagggatatgcaacATGGATGACCCTGttagctatgtttacatgcacacaataGCCCAATGGTATTCTTAGacagaatgaagaaacaaaGTTGAGCCTGACGCAGTGATATTTCTCAACAGTATATTCGGAACCCATGGAAGTTTGGTTAGCAATTGATGCTAAGTGGAATTATGTTGGGATTTTAGCCGGGCAGAgtcttttttataataatttaccaacacatccgAGTAAAATGTTGCTATTTCCAACAGGTTCGTCCCATTTTCATTGTCATTGTGCCTTTACATTAATAGCTAATGGCTACATGTCAGCTAGCATTTCCGTTAAAATGTCAGTGAGGATGTCCATTCTGACTGGTTGCCTAGCgactgtgtttttgtgtgtttgatgtcCCGTGTCGTAAGCAGGAatgatttatttccattttatcACAGTATAATGTTGGactattgatgtgcatgtaaatataattatagaGGCTGAAggattaaacacacatacacacagctatTATTTAATACAGTGAACATTCCTAACATGTAGCATGGCCTAAGCAAGTAAGCATGTGCCGATGTTAGATTTAGCCGTCATGCTAACTGCTAACCTTTACTACCTATTCagactcattatttaaataactaCCTGGACGTGAAGCTTCTTGCGCAACatttgtgacatttatttacCTGAAATCACTCATTACCTTCTTAGCTATGATTAAAAACACAAGAATACTGTGACCTTAtaagctaacactagctagctgtTAGTGAAAGCGGAAGCTGCAGGTGTAATTATAGTTAATTCCTAGTCTAAGGTTATCTAGCTTAATAGGTCTAGGTGTTTAAAATCGAAAAAGAAGTGAAGTGCCAAACACAACCAGCTAAAGCTAACTAATGCTTAGTCTTCCATCAAATTATGTTAACTAGTTCAGGTTTTTAAATACacttggtttatttttaagcactgattatcggcacatgcctacATGACAGCCATGTGAACAGCCaaagctttcatttcctgacatattaaaaaaataaataaatgaagtaaaCCCCTCATCACTTGCTGACAATCACCAGCTGTCTTAtttagctttacagaaaaaaagaagtgctcatttacataaatgatTTCCAAAGATCCTTTTGTTCTTActatttggattaaatataaacttaattttgtttctttaaaaaaaaaaaaaatcagagaaacaAGAAATGATTTCAGTCTAATATATTTGCTTTATGCAGCTTATAGTCACTGCTATTGCATATGTGGTTAtagattttcatattttaagtctgtgtcttttttttaaaacgtgATGATATGATATACTGCCAAAGATTTATCTTAAAAGATGTTTACACCTTGTTGTTATGCAGTCTTCATATTCagataagctgttttttttttctgtgtctccGCTGTGTTCCTGCCACACAATGAAGAAGACAATAAACACTTTTCTTTGTA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24315 TGFB1I1; transforming growth factor beta-1-induced transcript 1 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225044 lncRNA downstream 46795 3174077 ~ 3175635 (-) True G190100
TU225042 lncRNA downstream 46795 3174986 ~ 3175635 (-) False G190100
TU225039 lncRNA downstream 46795 3175074 ~ 3175635 (-) False G190100
TU225038 lncRNA downstream 48463 3173060 ~ 3173967 (-) True G190099
TU225036 lncRNA downstream 50859 3170883 ~ 3171571 (-) True G190097
TU225167 lncRNA upstream 115453 3349374 ~ 3349729 (-) True G190188
TU225215 lncRNA upstream 193515 3427436 ~ 3427644 (-) True G190232
TU225293 lncRNA upstream 263208 3497129 ~ 3497399 (-) True G190304
XR_004579133.1 lncRNA upstream 301744 3535665 ~ 3536422 (-) True LOC117598465
TU225326 lncRNA upstream 381499 3615420 ~ 3632422 (-) True G190336
XM_026947889.2 mRNA downstream 907 3212858 ~ 3221523 (-) True patl2
XM_034309013.1 mRNA downstream 16751 3183070 ~ 3205679 (-) False cmn
XM_026947822.2 mRNA upstream 4498 3238419 ~ 3242643 (-) True LOC113547469
XM_034309048.1 mRNA upstream 44988 3278909 ~ 3321622 (-) False LOC113547465
XM_026947817.2 mRNA upstream 44988 3278909 ~ 3321619 (-) True LOC113547465
XM_026947818.2 mRNA upstream 44988 3278909 ~ 3321273 (-) False LOC113547465
XM_026947873.2 mRNA upstream 96105 3330026 ~ 3352549 (-) False med1
TU224811 other downstream 366937 2852055 ~ 2855493 (-) True ndufa4
TU224780 other downstream 407850 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other downstream 416524 2800076 ~ 2805906 (-) False LOC113547504
XR_003404831.2 other downstream 1011451 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 1651357 1568286 ~ 1571073 (-) True G189199
trnap-cgg_2 other upstream 1664853 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 1666045 4899966 ~ 4900037 (-) True trnap-agg_2
trnap-ugg_3 other upstream 1667215 4901136 ~ 4901207 (-) True trnap-ugg_3
trnap-ugg_4 other upstream 1668407 4902328 ~ 4902399 (-) True trnap-ugg_4
trnap-ugg_5 other upstream 1669700 4903621 ~ 4903691 (-) True trnap-ugg_5

Expression Profile