RNA id: XM_026947910.2


Basic Information

Item Value
RNA id XM_026947910.2
length 1323
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC113547531
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2302233 ~ 2304287 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTAGATGGCCAGTATAGCTGACTGAAACTGTGAAGCAAGCTAAGCTAATATGTACTTCTATCTCGGTATGTACTTTGCTCTAAGCACTCTGGGAAGATTTGTGCTTTCAGCGCCGGTACCAGAGACTCAACACACCCTGGATGTAAAGGATATGGAGGTCATGAGAAGCTCTGAATTTCAGGACGCTGCAGAGAGCGCTCTCAGCTTGATCACGAAGATACTCAGTGATATTCCTGCCGTGCACAAATCACTGATCCACACTACGACGCTGTCTCTAGACGAGAGTGATTTGAGCACATTGCAGTTCCTCAAGGACTCTCTTGCTTTACCAGAACCAAGTCCTCTTCAGCCCCTCTCAGACAAGTTTAAACTGGACGTTTCCTTGGGCCGGATAGCTGAGGGTCTCAAGCTGCACAAGACTCTGTTGAAGGTGATCAGCGAGCTGGTGCACTTTAAACCCAAGAAGCTAAATGAATTCCTGTATGACCTGCGAGATTCACTGCTGCACGTCCACAAGATGCAGCATGTGATTAAGGCGGTGAATGGGCCAGAGAAGGTATCAGAAAGCCAACTGCAGGAGGATTTGGCTCCTAAACTGAAAAACGAATACGTGTCCCAGGTGGCAGCACATCTGGCCCTGATCCAGCTGAGACAGTTCGCCAAGGACGTTAGCCGTAGCCTTCAGAGCATGATCATCTCCCCGGTAGAACAAGAGACTCAAGATTCATAAATCCATGGAACCTAGTAACAAATGCTGTAATGAAAATATTAAGGTTTTTGTGGACAGTGTTGATGTACGTTACTACTGGCCTCCGCTTTTCAGGTGAATCATTTGTTTACATGATTTGTCAATATCCAGGAGCACATGGACTTAAACAATgcgaatatttatttatttattcatttatttatgtatttacgcCACACCCATCACCAAGCAGTAGTGAGCTCATGGTCATTTGCTCACCTTACTTGTTTTCCTTAGTAATTTTGTTGACTTGccatgtgatgatgatgatgatgatgatgatgatgttctttACTCACATCCTCATCACCACCACAACTAAGTTATGATCTACATTAGATctttattagatgtttattttgtttttcttttactatAGAGTATCTATGCTggaaatcattatttatttacgtgtatttataaaagcattttgtcattaatatatcgtatgtatttttttatttatataaaaacgcATGTGGTATAAAAGTTTTTAATGTCGCGTATTACAagaaatatcatatttattgGTTGCTTTTTTGGAAAAACAATTTCATTTCCTGTTAAGGGAaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224386 lncRNA upstream 6928 2295086 ~ 2295305 (+) True G189555
TU224296 lncRNA upstream 156477 2143152 ~ 2145756 (+) True G189477
TU224099 lncRNA upstream 361977 1939952 ~ 1940256 (+) False LOC117598558
XR_004579220.1 lncRNA upstream 376529 1923984 ~ 1925704 (+) True LOC117598584
TU224074 lncRNA upstream 376554 1924023 ~ 1925679 (+) False LOC117598584
TU224394 lncRNA downstream 3939 2308226 ~ 2309418 (+) True G189563
TU224401 lncRNA downstream 13031 2317318 ~ 2318307 (+) True G189570
TU224528 lncRNA downstream 220769 2525056 ~ 2528820 (+) True pyyb
TU224489 lncRNA downstream 286951 2591238 ~ 2609497 (+) True G189626
TU224549 lncRNA downstream 301596 2605883 ~ 2608078 (+) True G189678
XM_034309182.1 mRNA upstream 15179 2270632 ~ 2287054 (+) False lrrc3ca
XM_026947884.2 mRNA upstream 15179 2280510 ~ 2287054 (+) True lrrc3ca
XM_026947886.2 mRNA upstream 15179 2283308 ~ 2287054 (+) False lrrc3ca
XM_034309183.1 mRNA upstream 15179 2285069 ~ 2287054 (+) False lrrc3ca
XM_026947887.2 mRNA upstream 118035 2173539 ~ 2184198 (+) True irf9
XM_034309548.1 mRNA downstream 42758 2347045 ~ 2361095 (+) True top2a
XM_034309547.1 mRNA downstream 42758 2347045 ~ 2361095 (+) False top2a
XM_026947897.2 mRNA downstream 89789 2394076 ~ 2486796 (+) True raraa
XM_026947899.2 mRNA downstream 162371 2466658 ~ 2486796 (+) False raraa
XM_034309326.1 mRNA downstream 185522 2489809 ~ 2502830 (+) True mki67
TU223925 other upstream 636896 1663092 ~ 1665337 (+) False LOC117598477
XR_003403557.2 other upstream 2081865 137521 ~ 220368 (+) False ccser2b
TU224759 other downstream 456406 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 665838 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 665838 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 934157 3238444 ~ 3239216 (+) True G190028
TU225191 other downstream 1096980 3401267 ~ 3405009 (+) True G190212

Expression Profile