RNA id: XM_026947911.2


Basic Information

Item Value
RNA id XM_026947911.2
length 3617
RNA type mRNA
GC content 0.45
exon number 8
gene id pgap3
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2957439 ~ 2967729 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAACTGTTGAGACTAACAGTACGGTTTCTAGTCGGCCATGATGGTACATTTGCCTAAACATTTGAATGAGTGAAGGTTTTGGTTGTACTGAAGAGGTTTATGAAGTTGAGGGATTTAGAGATTAGAGTTTAGGACACTGTTTTATTCAGGTGGTTATTTTACGAGTGTGGACGGAAAACTATaaatttagagagagagacagagagagagagagagagagagaggagacagtgaGAGTTTTACTTCCGGGTTTCTGTCAGCGCTGTCTGTAGCTAGCTCTCCGCGCGCGCCGCGTTTCCGCATACTTTCCAGCAGATTCACCTGCGCGTGTGCACGCTCAGATCAAACGCCCAGGTGTTTATAACAGCGCGAGCTGTCATGTCGCCGTAACTTCCGCTCGTTAACGTTCATCTCAGCTCCCATGACGTGACAGGGACGGATCGCTCTCTCGGTgcctgtagattttttttttttaaacatatatatatatatatatatatatatatctatatatacaccGTGTGGACACCATGATGGTTTGCTGCACGTCACTGGGTCTCGCGCTGTTCACCGCGCTGCTCCTGTGCACACCGGGTCGCGTGCACGGCTCTCAGGGCGATAAGGAGCCCGTGTACCGGGACTGCGTGAAGCAGTGCGCGCGCACCAACTGCACCGGCGCCAAACTGCGCGGCTTCCAGTCCGCTCAGCCGCCTTACATGGCGCTCACGGGTTGGACGTGTCGGGATGACTGTCGTTATCAGTGCATGTGGACCACAGTTGGACTTTATCAGGCCGAGGGCTATCGAGTGCCTCAGTTCCATGGCAAGTGGCCATTTGTGCGCTTCCTGTGTTTTGAGGAGCCGGCGTCAGCCCTGGCGTCGCTGCTCAACGGTCTGGCGTGTTTACTGATGCTGCTGCGCTACCGCAGCGCCGTCCCACGCCAGTGCCCCATGTACCACACCGTCACCGCCTTCTCACTGGTGTCACTGAATGCCTGGTTCTGGTCTACAGTATTTCACACCAGAGACACTTATCTAACCGAGAAGATGGACTATTTTTGTGCATCAGCGGTGATCCTCTACTCCATCTACCTGTGCTGCGTCagGACGCTGGGTTTGCGGCGGCCCGGCGTGTCCAGCATTGTTGGAGTTTTGCTCATCCTGGCCTTCACCTCCCACGTCTCCTATCTCACCTTTGTTAGCTTTGACTACGGCTACAACATGGCCGCCAACGCAACCATAGGCATGGTAAACCTGCTGTGGTGGCTCGGTTGGTGCTGGCAGAACCGGAGGACGTTGCTATACTGGTGGAAGTGCGGCgtggtggtggtgctgctgCATGGCCTGGCGCTGCTCGAACTCCTCGACTTCCCGCCGCTCTTCTGGGTGCTGGACGCTCACGCCGCCTGGCACCTGGGCACTGTCCCTGTCCACTTCCTTTTCTACAGtTTCCTCATAGACGACAGCCTCCACCTCCTCAACACAGAGAAGGCTGGAGTCAAGCTGGAATAGGAGGAGCCTTTCTCAGAGCCCCGCCCCCTCCTCTCCCATCCCTCCAGTCAGGACGAGTCTGTGAATTTCGAGTTTACGAATtgagtttacactttttaccACTCTGCTACGGACAGCTGTGAAGAGAGTTTCTTTTAGTTGCTTAGTTCACGCGTGTTtgatttttgtactttttttttttttttttacatttctcacCATGTTTTTGCCTTTACTGAGCTTTGCCTTGAGTAGAAGAGCTTAGATTGGAAACTTTATTGACATGGTTTGTTTAAGTGTTacccattattatttatatttcgTACAGAAATCTTAAAAATGGGGTAAATCAGAGAGGTCAGGAGTGTGACATGCTGTTAAATCTTCaactgccatttttttccctttagcATAACTTACACTGACATCATTTGAgacaaaattgcaaaaaaaaaaaaaaaagagagagaggatgaaggGCACTAACGTTTGCTAATATTTTCAATGTTAAGATTAGCGTTACAGCAATACTTGCGCCTGCATGCCGCCATCCACCAGCAGAGGGATATGGTTTTGAAATCCATGCTAGTGTTCGCCTGCATCCCAAAccatatactatactataaataGTACATCAGAACACTTTTACCTTAACATGGTATATCGCAATTTGATGTATAATGTTCCAGCATATCCCACTGCTCATGgttcagacctgccaacctttacgtCTTTTTTGCGTAGGAGCTCCGCATTTTAACGTGGAGTACACTGCTATGAGTTATCACTAAAAATACggcaaaagagcagtcttcttttttcctctgataaaaatggcagatgatTCCAATCGACATATGATTctgaaatgattgacagttgcgtaGATGGTTTGAACTTTACGATATTAACTGACGCCCCCTGGTAGCCTTGTATTGACAAGTGATTTGCGAAAGGACAATATCGAAGATGTTCTGCGTTTTTACCCCTCCCCTGACCGCTGGCGGGATCACGCGTTAGTCTTCTTCGCGACTGGCAGGTCTGATGATGTACTGTTTCGTCATTTATTTTGGGGTGCTAGATAGCTAAAGACATGTTCCTTagtaaatttttgttttttgagaaaCTAATGAAATGGCTAGGTGACACACCACCTGCGCTCTTCAATATCCGTACAGAAATCTCACAATTTAtagaataatttcattttattcagagAGGCCTTAGCATGGGTGCTGCTAAGATCTAGAATTACCGTAAATTTTCGTAAGGTGCCTCGTGGTGTAATACCAGTGCCCACCAGCAGAGGGAAATCATTATCGCACCAGCGAGTTGGCCCAACATTTTGGCCAATGTCCTAAACTGCGTAAACACGTCAAAATAGAACGTTAACATCAATAACATACTGTTTTGACACGTATTTTAGTGCAGTAGCGATGTAACGTTTTGTCCGAGTTTGTAGCAAGCAGAAAAAAttgttcgtttttttttctggatgcTAGTTGAAGCACCTTccaaaaaaatacaagaatgtAAATGCTAATATTGTTGAATTACGTGTGGACAAGAGATAGCCATTTTAGATTTGCGAGTGTTTGAACAAGACGTCCGACTCTTGATTGAGGGTGTGTGAAGGCCTGTGATTGTTTATTGTGCTCATTTACATATTGCACATTTACGTATTGATCAGTATGAGCGCAGTATTTAGGGATATTGAAgggtatcaaaaaaaaaaaaggctgataaTATCATGATACGACTCACAAATGATATGTTGGAGCAGCTGTAATgtttgctttgccttttatttttttcttttcactgctgctgtgtttgcttcttttatactgttgtgttcatttttttttttaaccacaaagtgtttttttcttacatttttattattgttttccaTTCAGGAAGTAATCTGAAGCATGTTTTTCACCTGGAATGCCTTGAGAGgaaaaaatggaagagtttgaaactgtgtgtgtgtgtgtgtgtgtgtgtgtgttccacttaTGCCTTATTCCATCTTGTCCAGTATACAGTTATGTCTGTTGTCTTCACTGAAACTCCATTTCCATTGAACGATGTGAGTGCTTATTTGCTCCCTGGAGGATTAA

Function

GO: NA

KEGG:

id description
K23553 PGAP3, PER1; post-GPI attachment to proteins factor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224982 lncRNA downstream 46184 2911012 ~ 2911255 (-) True G190048
TU224779 lncRNA downstream 129632 2796507 ~ 2827807 (-) True G189882
TU224786 lncRNA downstream 147520 2806601 ~ 2809919 (-) False LOC113547504
TU224782 lncRNA downstream 154475 2792827 ~ 2802964 (-) True G189885
TU225014 lncRNA upstream 109302 3077031 ~ 3077290 (-) True G190076
TU225033 lncRNA upstream 188182 3155911 ~ 3156150 (-) True G190094
TU225036 lncRNA upstream 203154 3170883 ~ 3171571 (-) True G190097
TU225038 lncRNA upstream 205331 3173060 ~ 3173967 (-) True G190099
TU225044 lncRNA upstream 206348 3174077 ~ 3175635 (-) True G190100
XM_026947856.2 mRNA downstream 4535 2924595 ~ 2952904 (-) True erbb2
XM_026947845.2 mRNA downstream 61091 2874516 ~ 2896348 (-) True pth3r
XM_026947848.2 mRNA downstream 92450 2856236 ~ 2864989 (-) True rundc3ab
XM_026947900.2 mRNA downstream 102077 2852055 ~ 2855362 (-) False ndufa4
XM_034309351.1 mRNA downstream 129687 2813366 ~ 2827752 (-) True LOC117598559
XM_026947919.2 mRNA upstream 3601 2971330 ~ 2975144 (-) True mylpfb
XM_026947824.2 mRNA upstream 11577 2979306 ~ 2982750 (-) True LOC113547471
XM_026947826.2 mRNA upstream 11577 2979306 ~ 2982742 (-) False LOC113547471
XM_026947865.2 mRNA upstream 17929 2985658 ~ 2989177 (-) True LOC113547497
XM_026947867.2 mRNA upstream 29237 2996966 ~ 2998281 (-) True LOC113547499
TU224811 other downstream 101946 2852055 ~ 2855493 (-) True ndufa4
TU224780 other downstream 142859 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other downstream 151533 2800076 ~ 2805906 (-) False LOC113547504
XR_003404831.2 other downstream 746460 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 1386366 1568286 ~ 1571073 (-) True G189199
trnap-cgg_2 other upstream 1931045 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 1932237 4899966 ~ 4900037 (-) True trnap-agg_2
trnap-ugg_3 other upstream 1933407 4901136 ~ 4901207 (-) True trnap-ugg_3
trnap-ugg_4 other upstream 1934599 4902328 ~ 4902399 (-) True trnap-ugg_4
trnap-ugg_5 other upstream 1935892 4903621 ~ 4903691 (-) True trnap-ugg_5

Expression Profile