RNA id: XM_034309031.1


Basic Information

Item Value
RNA id XM_034309031.1
length 4114
RNA type mRNA
GC content 0.45
exon number 20
gene id ablim2
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 23541024 ~ 23600132 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGTGGCTGTCCTGTGTGGtgtctctctgcagtgtgtggCTGTGACCTGGCTCAGGGAGGCTTCTTCGTGCGGCAGGGCGAGTACATCTGCACTCTGGACTACCAGCGTCTCTACGGCACACGCTGCTTCAGCTGCGAGCAGTTCATCGAGGGCGAGGTGGTGTCCGCGCTCGGCAAGACTTATCACCCACGATGCTTTGTGTGTGCCATTTGCaaACAGCCATTTCCTGCAGGCGACCGCGTGACGTTTAACGGGAAAGAGTGCATCTGTCAGAAATGCACTCAGCCTCTGCCTGCCAACAGCTCAGCACCCGCTCAGGCTGTCCACAATTGCTGTGGCTGTGGGAAGGAGTTTAAGAACGAGCAGTCGCTGGTGGCTCTGGACAAGCACTGGCACCTGGGCTGCTTCAAGTGCAAAGTGTGCAACAAAGTGCTCAATGCTGAGTACATCAGCAAGGATGGAATTCCATACTGCGAGATGGACTACCATGCCATGTTCGGCATCCAGTGTGAGAACTGCAAGAAGTACATCACAGGGAAAGTGCTGGAGGCTGGAGATAAACAGTACCATCCGACATGTGCCAGATGTGTGCGCTGTGAGCAGATGTTCGGAGAAGGGGAGGAGATGTACCtacaagGTTCTTCCATCTGGCACCCTGCTTGCAGACAGGCAGCTCGAATGGAGGAGAAAAGTAAGGTGACCAGGACTTCCTCTGAGAGCATCACCTCAGTTCCTGCCTCCAGTGCGTCTGGATCTCCAAGCAGAGTTATCTATGCAAAGCTGGGCGATGAGTTCCTGGATTATAAAGACCTCGCAGCTCTTCCTAAGATAAAGGCCATCTATAACATCGACAGGCCCGACATGCTTTCATACTCACCTTATGTCAGCTACCCGTCAGAGGACAGGACCTATgtagagTCCCCGCAGTTCCTCACTCCGACTCCGACAGAGggAGATGGGGAAAAATCACCCCGTCAGAGAAGACCCTCCAGCCCCAGCTCTAACAGTTCATTGGGCGGTTACGGCCGCTACACCCCGTCCCGCTCACCACAGACCTACAGCAGACAAGAACAATATGAGAGCAGTAGGTACACCCCCCAACCTGGGAATTCCAACTCGTTGCCCGTGTACCCCGGGGGTCGATATTCTGGCCAGGGTAGTCCCAGAGACTCTTCTTCACTGCCCTTGTACTACACTAGTGGTGGTAGAAGTACCCCACAAACTCTTTCCCTGAACCCCACCACCCTGAACATGCTCCAACAGCACAACTACATCCCATACTTCAGAGGTAGTGAAAGTGGTCGTAGTACCCCGAGCCTCTCCACCTACTCCGATGGCAAATCTCCGTCCTCTGCATACGTGGCTGCACCTAAGCATTTCCACATCCCAGATAATAAAGCCAAAGATAATATCTATAGAAAACCCCCTATCTACAAACAGCATGCCTCCAGAACCTCCTGGCAAGATGGAGATGATGTAGACAGAAAGACCAGAACTAGCTGGACGCTTCTAAAGAGTCAGAGTGATGGACAGTCGCCGGACATTGACCCCAGGACTTCCACACACAGCCTGCCCACGGATATGTCTCAGCCCAATTTCCCCTACAATAAGTCTGCTTCACTCCCAGGCTACGGGCATAACGGCATCTACAAGGCGGCTGATCTTGGAGAGGATGACCATGACTCCAACTGGGGGGCAATGAGAGAGTACAAGgtgtACCCATATGACATGCTGGCTGTGACACACAGAGTAAGAGTGAAGCTGCCGCGTGATGTGGACCGCACCAGGCTGGAGAGGCACCTGTCCCCAGACGAGTTCTTCCAGGTGTTTGGGATGACCATCGCACAGTTCGACCGCTTGGCTCTGTGGAAGAGAAACGAACTGAAGAAAAAAGCTCGCTTGTTCTaaccaccatcaacaccaccgACACCACCACTAACACCACCACTATGCCCCCGAGAGAACTGAGAGAGAAGATAAACGAGGAGGTTCTCCTCAATCAGTCTACATATATGCAGAAAtaagtgaaagagtgaaaaaaaatatatatatatatacatacatatatgcacTTCCATTCTGCTGCGCTGCGTACCTGCTGTCATAACGCTGAAGAAAGGAGGAGTGTGTTATTTACGCCGTCACTTCACAGCCTCAGTGTTAGCCATGGTAGCTTTCTGTGCGAATGCCACGTTATATCTGTTCTGATGGGGAAGGAAAACCATCTACAGTGTGTACGTCTCTCCTGTTCCCTGATCTCGCTCACCTTTCAGATAACTGCAATAAGGATCTATATGTGAGGTATATAAGCTGTACgatttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgctatgGAAAGCCCTTCATCTCCATTTTTATCCaatcattacagtgtatttttctgtttttatctgtcttttcctccattttcctcAGCTGCCTGTCACAATCATTACATAATTAGCTAATAGATATGATTTGAGATGATAGTGTTTAACCATTACAATCTGCAgtcatatatttacataaatgtatgaaaaaacacaaattggAAAGCATACAGCCTGTTTTACAGCCTGCCACATATTCAATAATCCATAGTTATTGCTAATGATTCAGAAAACACTGAGTGGCGTTTCAGTCCTATGGTTTAAATTTTCAGAGTTAGAACTTGTGGCCTTGAAATGCTGCCTTCACATGCTATCAGAATTATCGTAAATATGAGTTTCCCACTAGGAAGTTGCAAAGACCCCTCAAGCTGTAATTACGACTGGGAAACTCTGAGATAATTTTGATTCCTGAGTTTCTGAGCTGTGAGGAGTCCTAAACCTTCAGGATGGCGGAGGAGAGAACAGTTTCTGTACTGACTAtcaggttttgttcatttttctaaaagCAGCTAATTGTTAGCACTTGCAGTTTTGGTCATATTCATCGTTGTATATCAGCAACCATTCGATGCATGGTTCTATGCAGGCTAGCTAACTGAGTAATATGTGTTatggtgtcaaaataaaagtaaaagaaaaaagtaatatgtatgaatgaacctGGCGTCgtccatgtttcatgttctttctgTCATCAAAGCATGTGAACATGACGTACTCGTAATTACCACTTGAGAATTGGAAAGTAGAATAATTCCCATAGCACATGAAGGCAGCATAATTCTTTCTTCAGTCTATAAATCAGACACGCTGTTAGTCAACAGTTTTTGAACATCCTTTTGGTGTTAAACTTGACTACAATCCTGTAGAATTAGAAAATCTAAGTAAGAACTGACTATAGgtgaactgagaaatgttttctcttgttgacttcttgtttttattttattgggaGAAAAAAAGGCTGATCTGGTTCACAAATTAGGTATTGTTAGCACACAAGATATTCTTTTGCAACGCATGTGACACTAACACTGTCTAATATCAACTGCGAGATACTTTTGCACTTTTACAGAAACGGCTTTATTAAATAAGTGCACTCAACTTTAATAAAGCGCTAATTCACATTAGAGTCTCATTACAATCAGTGAACAGGTCCATAAATACTAACGTCTAGGGATTTTAtggaacatttttgtttaatttttcctCTCTTGTTTAACAGCTATTAGTgcgtaaactgtaataaaaacaaacaaaaaaatctccatGGTTTTAAAAAACTTGACATGCAGTATAAATTCAGTTTACTTACTATCTTTACTTACacatcttttagtaaagttttgTGTAAATGATTTCGTGGgtcaaactgaactaaaattttatggcaaaattcacaaaagaatTTTATTGTTGTACGTTGATGAACGCCAGTGAACCATAAATTACCAAACGCATTCATGCTGCGTTCGACTCGAGGttgtaacttgtaattcccaacctccaaCCAGTAACAGCCAAAGGAAACGCCCCCTCAACTACTCGTCAACTCGGAATAGTCTTCTCAACTGCGAGTTCCTCtcctgtttacagagtgacatcaaatcaacatggccgctcacagtatcaacagtaaacaaagcagcacttcttaactttaaatgagttacactgtacTGTGTTAGCTTtaaatcaatcaacatacagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238092 lncRNA upstream 80570 23460002 ~ 23460455 (+) True G201240
TU238025 lncRNA upstream 142365 23272574 ~ 23398660 (+) False polr2a
TU238079 lncRNA upstream 160035 23375074 ~ 23380990 (+) True G201234
TU238060 lncRNA upstream 227620 23312078 ~ 23313405 (+) False LOC117595720
TU238014 lncRNA upstream 271606 23268792 ~ 23269419 (+) False G201186
TU238120 lncRNA downstream 42275 23642406 ~ 23688417 (+) False afap1
TU238141 lncRNA downstream 100588 23700719 ~ 23729010 (+) True G201281
TU238144 lncRNA downstream 118916 23719047 ~ 23722939 (+) True G201284
TU238157 lncRNA downstream 138226 23738357 ~ 23740340 (+) True G201297
TU238518 lncRNA downstream 162934 23763065 ~ 23763266 (+) True G201600
XM_034309526.1 mRNA upstream 68796 23466357 ~ 23472229 (+) True si:dkey-219e21.4
XM_026915767.2 mRNA upstream 81520 23447143 ~ 23459505 (+) True mfsd8
XM_026914799.2 mRNA upstream 104300 23426875 ~ 23436725 (+) False si:dkey-219e21.2
XM_026914798.2 mRNA upstream 104301 23426875 ~ 23436724 (+) True si:dkey-219e21.2
XM_026914512.2 mRNA upstream 120961 23402183 ~ 23420064 (+) True capgb
XM_034309456.1 mRNA downstream 4706 23604837 ~ 23687101 (+) False afap1
XM_026915393.2 mRNA downstream 32522 23632653 ~ 23687101 (+) True afap1
XM_026915394.2 mRNA downstream 32522 23632653 ~ 23687101 (+) False afap1
XM_026915396.2 mRNA downstream 32524 23632655 ~ 23687100 (+) False afap1
XM_026915397.2 mRNA downstream 32524 23632655 ~ 23687099 (+) False afap1
TU238026 other upstream 142365 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 211454 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 334646 23205666 ~ 23206379 (+) True G201154
TU237829 other upstream 669741 22798181 ~ 22871284 (+) True mrpl27
XR_003402874.2 other upstream 1528721 22008511 ~ 22012304 (+) False srsf2a
TU238950 other downstream 781656 24381787 ~ 24382287 (+) True G201962
TU239119 other downstream 1061094 24661225 ~ 24665525 (+) False LOC113527710
TU239415 other downstream 1729078 25329209 ~ 25354290 (+) False dupd1
TU239521 other downstream 1897584 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 1898049 25498180 ~ 25502628 (+) True G202374

Expression Profile