Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034309046.1 |
| length | 1244 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 5 |
| gene id | pagr1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 4991942 ~ 4998332 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0007420 | brain development | biological_process |
| id | description |
|---|---|
| K14973 | PA1; PAXIP1-associated protein 1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU226166 | lncRNA | downstream | 72965 | 4911734 ~ 4918977 (-) | True | trnap-cgg_3 |
| TU225963 | lncRNA | downstream | 241065 | 4701104 ~ 4750877 (-) | True | G190885 |
| TU225914 | lncRNA | downstream | 325371 | 4666312 ~ 4666571 (-) | True | G190849 |
| TU225890 | lncRNA | downstream | 395119 | 4596539 ~ 4596823 (-) | True | G190829 |
| TU225878 | lncRNA | downstream | 416412 | 4573682 ~ 4575530 (-) | True | G190821 |
| TU226433 | lncRNA | upstream | 384663 | 5382995 ~ 5387137 (-) | True | G191279 |
| TU226592 | lncRNA | upstream | 444630 | 5442962 ~ 5445167 (-) | True | G191413 |
| TU226604 | lncRNA | upstream | 484288 | 5482620 ~ 5484667 (-) | True | G191424 |
| TU226605 | lncRNA | upstream | 490485 | 5488817 ~ 5489111 (-) | False | gdpd3b |
| TU226650 | lncRNA | upstream | 667841 | 5666173 ~ 5667846 (-) | True | G191463 |
| XM_026915586.2 | mRNA | downstream | 142264 | 4837911 ~ 4849678 (-) | True | fam20a |
| XM_034309628.1 | mRNA | downstream | 164590 | 4810652 ~ 4827352 (-) | False | zdhhc16b |
| XM_026915838.2 | mRNA | downstream | 171357 | 4810652 ~ 4820585 (-) | False | zdhhc16b |
| XM_026915839.2 | mRNA | downstream | 174251 | 4810652 ~ 4817691 (-) | True | zdhhc16b |
| XM_026915203.2 | mRNA | downstream | 204366 | 4770544 ~ 4787576 (-) | False | ubtd1b |
| XM_026914518.2 | mRNA | upstream | 61166 | 5059498 ~ 5063418 (-) | True | LOC113527048 |
| XM_026914728.2 | mRNA | upstream | 257932 | 5256264 ~ 5265357 (-) | True | g6pc3 |
| XM_026914669.2 | mRNA | upstream | 291380 | 5289712 ~ 5294398 (-) | True | tmem101 |
| XM_034309110.1 | mRNA | upstream | 313912 | 5312244 ~ 5322475 (-) | True | LOC113527073 |
| XM_026915784.2 | mRNA | upstream | 406850 | 5405182 ~ 5416607 (-) | True | sgca |
| TU226185 | other | downstream | 39083 | 4949163 ~ 4952859 (-) | True | G191056 |
| trnap-cgg_3 | other | downstream | 72970 | 4918901 ~ 4918972 (-) | False | trnap-cgg_3 |
| trnap-agg_4 | other | downstream | 74055 | 4917816 ~ 4917887 (-) | True | trnap-agg_4 |
| trnap-ugg_13 | other | downstream | 76366 | 4915505 ~ 4915576 (-) | True | trnap-ugg_13 |
| trnap-ugg_12 | other | downstream | 77556 | 4914316 ~ 4914386 (-) | True | trnap-ugg_12 |
| TU226226 | other | upstream | 61195 | 5059527 ~ 5063395 (-) | False | LOC113527048 |
| trnai-uau_5 | other | upstream | 303781 | 5302113 ~ 5302205 (-) | True | trnai-uau_5 |
| trnav-uac_7 | other | upstream | 475066 | 5473398 ~ 5473470 (-) | True | trnav-uac_7 |
| TU226617 | other | upstream | 612788 | 5611120 ~ 5613954 (-) | True | G191430 |
| TU226699 | other | upstream | 770196 | 5768528 ~ 5776020 (-) | False | LOC113527291 |
