RNA id: XM_034309120.1


Basic Information

Item Value
RNA id XM_034309120.1
length 3613
RNA type mRNA
GC content 0.44
exon number 16
gene id ttll6
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11528894 ~ 11536124 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGACTCAGCGAGCCGGAATTGTCATCACTAGTGCATCAACTGGAAATACAGAAGATGTTAAAAACTTTTGTATTACAATGTTCGAAATGACAATGttgatatttttacatttaacgTCCAAATACAATCAGCGTGCGAGTTATCTGAGCGCGGAATGTGATTGGATAGCTCTGCGCGCGCCTGATCTAACACACTCGACTCGGAAACACGCTCAGAAATCACGTGAGAAATATTCATGTTTCATTCTCCTTACGCGACTCTTTGTTACTTAAGACAggtgtatattttgtattttgtccaTATTGATCTTCAGTGCATTTGTTATCTACATTAATCTGTATTAGCTAGCTCGTTTCTAATCTGTTTACAATGCGTCGttctgttactatagcaacggtGAATACACCACTATGCGTGGCTGATCACGCTAAGACTCTGAAGCTTTTTGTTATTACATCGCCGAGAATGTGATACAGGGATTATGTGCCAGCTCTGAGACAGACATGTGGCCCAGTATATGTTTCCCCAGCAGGGAAAATGACAGCATAAGCTGATAACCAGAAACTACTGAGTTGTACAGAAGAGTAATTTGCTCCCTGCCTGAAAGGCCTCTGTCTTCCTGTTCCCAAGCACTTGAAAGCATGGGCTCTCCTGCAGAGGGTCCAGATCCCCAGGACTCTTTTCAATACGAGCCCAATGCAGAGGTGGAGGGAGAGGGCTGGGGCAGTGACAGTCATGTTGAAATCTGTACCTCAAACCTTGCAGgaagcaagaagaagaagaaaagaaagaagagATTGTGGATCAATCTCACTAACTGTAAATATGAGAGTGTGCGCCGAGCTGCCCGCAGATACGGTCTGCGAGAGGCTGGGGAAGGAGAAGAGTGGACCTTATTTTGGACTGATTTTTCAGTCTCTTTGGATAGAGTCATGGAAATGAAGCGATATCAGAAAATCAACCATTTTCCAGGAATGAATGAGATATGTAGGAAAGACCTCCTTGCAAGAAACCTGAACCGTATGTTGAAGCTATTTCCAAAAGACTATAACATCTTTCCCCGCACTTGGTGCCTTCCTGCAGATTACAGTGATTTTCAAGCCTACACAAGAGccaaaaagaataaaacctATATTTGCAAACCAGAGTCAGGTTGCCAAGGTCGCGGTATCTTTCTCAGCAAGTCCAGCAAAGACATCCGACCAGGTGAACACATGATTTGCCAGGTGTATATATCCAAGCCATTTATAATAGATGGATTCAAGTTTGACTTGCGCATTTATGTGTTGGTGACTAGCTGTGATCCCTTCCGCATCTTTGTGTACAATGAGGGACTAGCTCGTTTCTGCACCAACCAGTACAGTGAGCCCACCGGTAGCACCATGGATGATGTTTGCATGCACCTGACCAACTATGCCATCAACAAGCACAGTGAGAATTTTGTTCATGACGATGACAGGGGAAGCAAAcgGAAGCTTTCAGCCTTCAACAAGTATCTGGAGTCCATGAGTTATGACTCACAGAAGGTGTGGGCAGATATTGATGATGTGATCATTAAGACCCTCATCTCAGCTCATCCCATTCTCAAGCACAACTACCACACCTGCTTCCCCAATCATACAGCAGGCAATGCCTGCTTTGAGATCCTGGGCTTTGATGTGCTGCTGGACCATCGGCTCAAGCCCTGGCTGCTGGAGGTCAATCATTCTCCTAGCTTCACCACAGACTCTCATTTGGACCGTGAGGTGAAGGACAGCTTGCTGTATGACACTCTGGTGCTGATTAACCTGGGGGCATGTGATCGCAAGAAGATCACAGAAGAGGAGAAGCGTAGGGTGAAAGAGCGACTACAACAGAATCGCTCCAGAGAGGCCAGGAATGAGGAACTTCGCCAGGCCCAGGCTACCAGTATGGAGCAGATGCAGAGATATGAAGCCAATCACCTTGGAGGATTCCGTCCAATCTACCCCacagaggaaggagagagatatgagaaatattttaaacacagcagCTCTCTGTTCCAGGAGACTGCAGCCTCTAAAGCAAGGGAGGAGTGTTCTAGGCAGCAGTTGCAGGAGCTGCGTCTGAAGCAGGAGCAGAAAGAACGAAAACATAAAGGAAATCACAAGGATCTGCAAGGAGAATCTGCAGGAGAAAGAGCCAAACCATGCAAAGTGCAAACTCACCACATACACTCCAAACCAAGCTCTGAACAAGATCTGCAGTCCATGCCCCCTCTTCCAACTTCAGCAGGAAGGACGTCCTTGTTGTTGGACGTGtcaaaagaagaggaagaagaggaggcgGAACGAGTTAATGCACTCCTCCAACGAAAAAACTTGCTGCGGGACTTGGGTGTGGTTGATCAGGTGTATCAGTTGCTACACGCTGCCCAGTCGCAGCCTAATCCCAACAAACACCCACATGAACAATTGGGTTCTCTGACAGACTTTTGGAGGCATAAACCCTGTACTGTGAGACAGCGGAAAGTTCCTCCAGGAGACAAGCCATCCCAGCAGTATTTGCACTCTCGCCTCATGCAGCACTGCACACCGCTGACCATGCATGATTGGAGGCCTCCACGGCTGGTACTGAGTGAGCCAACCAGTTTCCAGCATATCGATCTGGATTTGACAACAGCATCAGATGTTGAGCGACAAGCGCTTCCAGATCACAGGAGGGCTGCTAGTGCACATCGGATACCATGGACAATTTCTAGCCCTCTTGCCAGACAGGGCAGTATTAGATCATGCTTTCTGGAGTCAAGGAACCGGACTCCAATAATGACTATGCAGCAGCTGGTTTCGAGGCAACTGTGTTGTGGTCCCACGTCTTCTGACCGTAAAGCCTTGCAGAATCTGTTCATCGTCTCCACTTCAGCCCCTATTGTCCCACGTCCAGGTCACTCTTACACTCCCCACAAAGGCCACTGCAAAAACTCTCAACAAGGACATAGCCACTGATGTGGGATATCCTGCTGCTCAACGGCCAAGCCTATGGTTCCCTCTGTGCAGTATTTTAATTCCCAGTATGTATATGAAATCCAAATCAGTATGTATATGAAATCcaaatatttttcagtgtaCTTGAGAGTCTGGGATTTTCTTTGTTCAGGTATAAATGCAAAGTCTTGTGTACTTGTTTTTGGCATATAAGAGAGACTGGTTGTAAAAgacctgtttattttttaatttctatttttgctttaaatattatatttattttaatagagTATATATCAATTATAGGTGAGCCATCATATATTCTGAGCcagaaaacaatgaaaaatatttaaataacagtTAATTTTGTAAGTGGAACTGTGGGGCaattgtctgttgtgtttatttatttcttgttctAAAAGTACAAATCAACTAACAAAAGTCTTAGTAGTGACACTCTGTGTAATCAGATAACATTAAGGTTCTTTAGAGCGAtgccatatatattttttggtttCCTGGAACCTTTGAATTAATGAATCTTTTGCCATTTTTGATGGTGGATGTCACCAATATGTGATAAGATCTTTGTGttagaaaataattattcagtttattGTGGCAGCAAACATTAAACGTCTCCAGTTCCTTTCTTTTATCTAAA

Function

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0018095 protein polyglutamylation biological_process
GO:0035082 axoneme assembly biological_process
GO:0036064 ciliary basal body cellular_component
GO:0015631 tubulin binding molecular_function
GO:0070740 tubulin-glutamic acid ligase activity molecular_function

KEGG:

id description
K16582 TTLL6_13; tubulin polyglutamylase TTLL6/13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230438 lncRNA upstream 149704 11378461 ~ 11379190 (+) True G194571
TU230242 lncRNA upstream 280787 11247763 ~ 11248107 (+) False si:ch73-139e5.4
TU230183 lncRNA upstream 321918 11135232 ~ 11206976 (+) True G194360
TU230204 lncRNA upstream 408344 11120318 ~ 11120550 (+) True G194380
TU230113 lncRNA upstream 432716 11093163 ~ 11096178 (+) True G194293
TU230527 lncRNA downstream 56768 11592892 ~ 11593091 (+) True G194627
TU230523 lncRNA downstream 61406 11597530 ~ 11602441 (+) True G194623
TU230532 lncRNA downstream 78265 11614389 ~ 11621269 (+) True tmem106a
TU230688 lncRNA downstream 182773 11718897 ~ 11719113 (+) True G194748
TU230779 lncRNA downstream 502379 12038503 ~ 12038728 (+) True G194828
XM_026914835.2 mRNA upstream 6179 11497318 ~ 11522715 (+) True srcap
XM_026914837.2 mRNA upstream 6179 11497318 ~ 11522715 (+) False srcap
XM_026914836.2 mRNA upstream 6179 11497318 ~ 11522715 (+) False srcap
XM_034309269.1 mRNA upstream 6179 11498505 ~ 11522715 (+) False srcap
XM_026914839.2 mRNA upstream 31829 11486623 ~ 11497065 (+) False fbrs
XM_026915449.2 mRNA downstream 3570 11539694 ~ 11541967 (+) True hoxb8b
XM_026915190.2 mRNA downstream 8677 11544801 ~ 11561935 (+) False hoxb6b
XM_026915191.2 mRNA downstream 8677 11544801 ~ 11561935 (+) False hoxb6b
XM_034309125.1 mRNA downstream 8677 11544801 ~ 11549639 (+) False hoxb6b
XM_034309124.1 mRNA downstream 9026 11545150 ~ 11549639 (+) False hoxb6b
trnaq-cug_16 other upstream 242626 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 1464268 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1893827 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 2015059 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 2016263 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 936559 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 1947177 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 1947177 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5319646 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 6041159 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile