RNA id: XM_034309132.1


Basic Information

Item Value
RNA id XM_034309132.1
length 1760
RNA type mRNA
GC content 0.43
exon number 10
gene id uros
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24047563 ~ 24064984 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCTTGTTGGGTTTTTTAAGATAAGCGTCTCATCcggaagaaaaactatttcatgaaataaaattacGGTTTATTTTAGAACACATTTATATGAtgcttatataataataaatgttgataacttatttaaagaattttaattGCATAAATATATCTTGCAACGTGTAAGTTCACGAAAACCGAGCTTTAATTTTGAAGCACAGGTCATTTGGTGCTCTGTTACTTTACAGAtgggaagaaaataaaaacaaacccagCACTGGagCTACAGGTGACAGAATGAAGGTGCTGGTGCTAAAGGAACCCAGAGAGAATGATAGTGGAGCAGATCCATACATCAAGgagCTGGCAGCGTGTGGACACTCGGCGACACTCGTCCCCGTCCTGGCGTTTCAGTTTGTCTCTCTGGATCGTCTGTCAGATCGGctgtttGATCCGGACAGGCACGGGGGGCTCGTGTTCACCAGTCCTAGAGCGGTCGAGGCTGTGAGACGGTGCATTGAGAGCAGTACACACAGAGaagAGTGGAACACGGTGAAAGAACAGTGGAACGCAAAATCTGTGTATGTGGTGGGGAAAGCGACGGCGTCATTAGttgagGCTCTGGGTCTGAAGCCCCTCGGCGAACACACAGGCACGGCTGACGTTCTGTCTCAACTCGTCATTGagagaGAAAACTCCACGTCTCTGCCTCTGTTCTTTCCCTGCGGCTCTCTGAAGAGAGAAGTGCTGCCTACCACACTGAGACAACACGGTATTTCTCTGGAGACACTAACAGTCTATGAGACGGCTGAACATCCGGACCTGgagaaaaacatcacacactacttCAGCGAGCAGggagtGCCAGCCAGCGTTGCATTCTTCAGTCCTTCTGGAGTGAAGTTTTGTCTGGAGCTGGTAAAGAAGCTGGCTGGAGAAAAACTGGACCAGATCAAGttcGCCGCTATCGGTCCCACCACGGCCGAGGCTCTACAGGAAGCGGGTGTGAGCGTCAGCTGCTCGGCTCAGAAACCCACACCGCAGCATCTCGCCACAGCCATCACACACAGCCTGAGcgatgacctctgaccccaggCACAGTCCGTCCAGACACCTGAGCCATCACGCCCAAAGCTGAAAGatatactataatattaaaCGTTGAAATTGTAGCGTAACACGTCATATTATTCTGTTTACTACAGTGGAATGTGGTttaggacagaaaaaaaatgtatttcaagAGAATTATTAGTCTGTTAAAGCATAAATGAGACACTTTAAAGCCAAGAAAGATCACACAATTTAGACAATATTCAACAAACGTTGCGAATCAGTTGTAAGCTATACCGAACACACACCACTATTTtatttgtgaagtcttgccatttTTTCATCTTAATTTCAGAATTGCactaaatacagaaatgtaacTGGAGGACTGGAAGACAGAGAAACCAATATACAACAttgatttatataaaatttaagaTCACAAAAACAGCCCGAAATTGTTTGTATTTTAGTGCATATTTTActgaacatttttataatttgttaCAGTTGATACCCTGTGATACCTCCATGCATTTTTACAATAGAatgaatgttttctgtatttcattTCTCTGCTGTTAGTTTGATTTTCATCGCGACTCGAGTATTTGATGCACTGAAATGAGTCACTGGGTTACAGCAAATAATtaggaatgtgtgtgaatgagtgttaaGTTCTGTTTGAgatgaaaatgcaaataaaggacagtttatattttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238693 lncRNA upstream 7751 24038938 ~ 24043243 (+) True G201753
TU238523 lncRNA upstream 190018 23775381 ~ 23860976 (+) True G201604
TU238518 lncRNA upstream 287728 23763065 ~ 23763266 (+) True G201600
TU238157 lncRNA upstream 310654 23738357 ~ 23740340 (+) True G201297
TU238144 lncRNA upstream 328055 23719047 ~ 23722939 (+) True G201284
TU238756 lncRNA downstream 91522 24156506 ~ 24156965 (+) True G201793
TU238739 lncRNA downstream 138878 24203862 ~ 24236550 (+) False G201782
TU238779 lncRNA downstream 159894 24224878 ~ 24225626 (+) True G201814
TU238732 lncRNA downstream 170519 24235503 ~ 24236550 (+) False G201782
TU238736 lncRNA downstream 170519 24235503 ~ 24236779 (+) True G201782
XM_034309456.1 mRNA upstream 363893 23604837 ~ 23687101 (+) False afap1
XM_026915393.2 mRNA upstream 363893 23632653 ~ 23687101 (+) True afap1
XM_026915394.2 mRNA upstream 363893 23632653 ~ 23687101 (+) False afap1
XM_026915396.2 mRNA upstream 363894 23632655 ~ 23687100 (+) False afap1
XM_026915397.2 mRNA upstream 363895 23632655 ~ 23687099 (+) False afap1
XM_026914558.2 mRNA downstream 2555 24067539 ~ 24080612 (+) True mmp21
XM_034309376.1 mRNA downstream 67922 24132906 ~ 24235084 (+) False ctbp2l
XM_034309377.1 mRNA downstream 67922 24132906 ~ 24235084 (+) False ctbp2l
XM_034309375.1 mRNA downstream 67922 24132906 ~ 24235084 (+) False ctbp2l
XM_034309378.1 mRNA downstream 67922 24132906 ~ 24235084 (+) False ctbp2l
TU238026 other upstream 652334 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 721423 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 844615 23205666 ~ 23206379 (+) True G201154
TU237829 other upstream 1179710 22798181 ~ 22871284 (+) True mrpl27
XR_003402874.2 other upstream 2038690 22008511 ~ 22012304 (+) False srsf2a
TU238950 other downstream 316803 24381787 ~ 24382287 (+) True G201962
TU239119 other downstream 596241 24661225 ~ 24665525 (+) False LOC113527710
TU239415 other downstream 1264225 25329209 ~ 25354290 (+) False dupd1
TU239521 other downstream 1432731 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 1433196 25498180 ~ 25502628 (+) True G202374

Expression Profile