RNA id: XM_034309133.1


Basic Information

Item Value
RNA id XM_034309133.1
length 1576
RNA type mRNA
GC content 0.46
exon number 10
gene id uros
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24047563 ~ 24064984 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTCACTCGCCCCAGGTCACTGATCCATCAACCCGCAGTCAGATACGTCACGGACTGGCACCAGCACACACCCAGCGGTTAGCTACAGGTGACAGAATGAAGGTGCTGGTGCTAAAGGAACCCAGAGAGAATGATAGTGGAGCAGATCCATACATCAAGgagCTGGCAGCGTGTGGACACTCGGCGACACTCGTCCCCGTCCTGGCGTTTCAGTTTGTCTCTCTGGATCGTCTGTCAGATCGGctgtttGATCCGGACAGGCACGGGGGGCTCGTGTTCACCAGTCCTAGAGCGGTCGAGGCTGTGAGACGGTGCATTGAGAGCAGTACACACAGAGaagAGTGGAACACGGTGAAAGAACAGTGGAACGCAAAATCTGTGTATGTGGTGGGGAAAGCGACGGCGTCATTAGttgagGCTCTGGGTCTGAAGCCCCTCGGCGAACACACAGGCACGGCTGACGTTCTGTCTCAACTCGTCATTGagagaGAAAACTCCACGTCTCTGCCTCTGTTCTTTCCCTGCGGCTCTCTGAAGAGAGAAGTGCTGCCTACCACACTGAGACAACACGGTATTTCTCTGGAGACACTAACAGTCTATGAGACGGCTGAACATCCGGACCTGgagaaaaacatcacacactacttCAGCGAGCAGggagtGCCAGCCAGCGTTGCATTCTTCAGTCCTTCTGGAGTGAAGTTTTGTCTGGAGCTGGTAAAGAAGCTGGCTGGAGAAAAACTGGACCAGATCAAGttcGCCGCTATCGGTCCCACCACGGCCGAGGCTCTACAGGAAGCGGGTGTGAGCGTCAGCTGCTCGGCTCAGAAACCCACACCGCAGCATCTCGCCACAGCCATCACACACAGCCTGAGcgatgacctctgaccccaggCACAGTCCGTCCAGACACCTGAGCCATCACGCCCAAAGCTGAAAGatatactataatattaaaCGTTGAAATTGTAGCGTAACACGTCATATTATTCTGTTTACTACAGTGGAATGTGGTttaggacagaaaaaaaatgtatttcaagAGAATTATTAGTCTGTTAAAGCATAAATGAGACACTTTAAAGCCAAGAAAGATCACACAATTTAGACAATATTCAACAAACGTTGCGAATCAGTTGTAAGCTATACCGAACACACACCACTATTTtatttgtgaagtcttgccatttTTTCATCTTAATTTCAGAATTGCactaaatacagaaatgtaacTGGAGGACTGGAAGACAGAGAAACCAATATACAACAttgatttatataaaatttaagaTCACAAAAACAGCCCGAAATTGTTTGTATTTTAGTGCATATTTTActgaacatttttataatttgttaCAGTTGATACCCTGTGATACCTCCATGCATTTTTACAATAGAatgaatgttttctgtatttcattTCTCTGCTGTTAGTTTGATTTTCATCGCGACTCGAGTATTTGATGCACTGAAATGAGTCACTGGGTTACAGCAAATAATtaggaatgtgtgtgaatgagtgttaaGTTCTGTTTGAgatgaaaatgcaaataaaggacagtttatattttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238693 lncRNA upstream 4320 24038938 ~ 24043243 (+) True G201753
TU238523 lncRNA upstream 186587 23775381 ~ 23860976 (+) True G201604
TU238518 lncRNA upstream 284297 23763065 ~ 23763266 (+) True G201600
TU238157 lncRNA upstream 307223 23738357 ~ 23740340 (+) True G201297
TU238141 lncRNA upstream 318553 23700719 ~ 23729010 (+) True G201281
TU238756 lncRNA downstream 91522 24156506 ~ 24156965 (+) True G201793
TU238739 lncRNA downstream 138878 24203862 ~ 24236550 (+) False G201782
TU238779 lncRNA downstream 159894 24224878 ~ 24225626 (+) True G201814
TU238732 lncRNA downstream 170519 24235503 ~ 24236550 (+) False G201782
TU238736 lncRNA downstream 170519 24235503 ~ 24236779 (+) True G201782
XM_034309456.1 mRNA upstream 360462 23604837 ~ 23687101 (+) False afap1
XM_026915393.2 mRNA upstream 360462 23632653 ~ 23687101 (+) True afap1
XM_026915394.2 mRNA upstream 360462 23632653 ~ 23687101 (+) False afap1
XM_026915396.2 mRNA upstream 360463 23632655 ~ 23687100 (+) False afap1
XM_026915397.2 mRNA upstream 360464 23632655 ~ 23687099 (+) False afap1
XM_026914558.2 mRNA downstream 2555 24067539 ~ 24080612 (+) True mmp21
XM_034309376.1 mRNA downstream 67922 24132906 ~ 24235084 (+) False ctbp2l
XM_034309377.1 mRNA downstream 67922 24132906 ~ 24235084 (+) False ctbp2l
XM_034309375.1 mRNA downstream 67922 24132906 ~ 24235084 (+) False ctbp2l
XM_034309378.1 mRNA downstream 67922 24132906 ~ 24235084 (+) False ctbp2l
TU238026 other upstream 648903 23357511 ~ 23398660 (+) False polr2a
TU238054 other upstream 717992 23324073 ~ 23329571 (+) True G201214
TU237980 other upstream 841184 23205666 ~ 23206379 (+) True G201154
TU237829 other upstream 1176279 22798181 ~ 22871284 (+) True mrpl27
XR_003402874.2 other upstream 2035259 22008511 ~ 22012304 (+) False srsf2a
TU238950 other downstream 316803 24381787 ~ 24382287 (+) True G201962
TU239119 other downstream 596241 24661225 ~ 24665525 (+) False LOC113527710
TU239415 other downstream 1264225 25329209 ~ 25354290 (+) False dupd1
TU239521 other downstream 1432731 25497715 ~ 25498919 (+) True G202397
TU239496 other downstream 1433196 25498180 ~ 25502628 (+) True G202374

Expression Profile