RNA id: XM_034309173.1


Basic Information

Item Value
RNA id XM_034309173.1
length 9108
RNA type mRNA
GC content 0.52
exon number 35
gene id plce1
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6330477 ~ 6416809 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGGTTTAACTATCAAAACTGTATACACTGTACTAACTAGTGTTCGTAAATAAAAGCGGTGACTTTATTATAACATGATTTTTagataatttttattaataagcTGTATCTTTGCTTGTCAGTGAATGTAATATAATGCAATGTAATGTAAGGTAAAGGCACTTAAGGGTAATTCTGTAGTGCACCAAAAACACTGTAGATAAGTGTAGGGAAGTCAGTAGGGTTTTATGGAAAAGAGTgcatggagggaaaaaaaataaacatggcgCAGATAAGCACTGGGCTGGAAGGTGGGTTTGAGGGTAGGCGCGCGCTTGTGAAAGCAGAGCTGTGTGCCTGTTTCCCCGCATTCCTATGATGTGACACCTCAAAGGCTCTGCCTCAGTGTGCAGACTGCTCACAGTGCACGCAGTGTGCTCTCTGCTCACTGCACAGCCTGGGATCTCTCTTTAAAGTCAGAAGAAACCTGAAAGCCTGTTGTGCTGTCTTTAACGTTAACACCACAGAGACGCTTTAAGAGGTCTTGCTGAAGTGAGCTTTTGCAGGCCATCAGATCTTGAGAGAAGAGGTTGGAGAAGACAGTGCTGAGCATTACACAACCTGGGAGTGCCACTCCTTATTTTGGAACTAAATTTTCCTTCTGCTTCCAGCAAAAGTGACTCTTTTGGAACcgaaacagtttttaaaaatccctCTATCCAGCTTTGACAGCCAAAGCTCTGTGATTGAGTGCTTAGTGATATGAGGGTTTGTGTGGAGGAACAGGTGGGAATTGGACTACCTAGCATCTCTGTATCTTCGGAGAAGGCTGCTGTGATTCTGGGAGTCAGAATGGAGGCGAGAGTGGCTTCTTCTTCATTgacaaaatacagaaatcagATGCTGTCTTTTGGTTATGAGGCACATGAGAGAAGAAACTCTGAGCCACTCATCCcttgttcatgttcacatcatcTACATCTAGCAGAGGATTGCTGTGACTCTAAATCATCTGAACAGATACGTATGGACTGTGGTGCAAGAAGCACTTTGGACACCAGATCCAAGAGCTTGGACAGCCTGGACTATGTACACAAAGACTGCTGTTGCAGCACAGTTTTATGCCGCCGGGTGGAGGGATTGTGTTGCAGCCAGCCGTGCAGCACATGTGGGCCAGTGGAAACAGACGGGTACTGCCAAGAGGCCTCCTTTCAAAGTGGAGGCTGGGAAACAGGGTTTCCGAGGAGAACAGAGGGGTTTTCTTCTGCCGCGATGCGGCTCGCTGGAGAGTCGCCAAGCCTGGATGAGGAGAGGCTCGGCACCAGGAGAATCAGCTTACCCACGCCGTTCGTGACGGGCTTCCACTGCACGTGTGCCTATGGTGCAAGGCTGGAAGCAGGAACTCAGGACCGGGTAAATTTGAATTCTGCCCGTTGCCACAACGGTGTCTTCTCAAGCCTGGAGAGGCTCAACAAGAGATCCAAAGTAAGGTGCTTGAAGATGCCCTGCCAGGCTTCCACAACCTCAAAGCCTTCCTTGGCTCACCAACACAGCGATGGTGAGGCTACAGCCTCAGATAGTGAGTTTGCTCACAAGAAGGAGCGGTCCACTGTCCTGGTCCGGAGGTACCTGAAGAACAACCAGAAGGTCTTGAAGAAGGTGTGCACTGGCACCAGAGCGATTGTGAGGACCGGTCACATGTCAGACAGAGCATGGCAGGCTGCTTATGGAAGAAAATGTCGTTTGAGCAAGGACTGTACCTTTGTAGACATGGAATACAGCAGAGTCCTCCAGGCCATCCAGCTGCAGGTCTCCAGGGCTCTTCTCTCCTATATAGGGGTCAGACTGGAGCAGCTCCAGCATGCTTTTCCTGCTCTGAATGCTGAGGTTCACCTCCTGCACCCTTCCAGGAAGCTGCTGGCTCGGGTGGTAGCATGGCTACCAGCCTCTGTGCAGCACACTGAGTACCGCGCCTGCTCCTGTCGGACTAGCTTAGCAGCCCACCTGAGCGGAGCCCTGCTGGAGGCCACGGCTGCCATCACCACCAGCACACCCATGTTCAAAGAACGCCAGCTGTGTGGCTCCATGGCCAGCTCCGGTTCGCTCTCATCTGGCGTGACAGGGATCAGTAAGGAGCTGGCCGACCTGCGGCAGCTCATCCAGTTCCCAGAGGAGATCGCCAGCATCCTGAcggagcaggagcagcagctgtACCGCCGTGTGCTCCCACTCGACTACCTGTGCTTCCTCACACGCGACCTGGCCAGCCCCGAGTGCCACAAGAGCCACCCACATCTCAAGGCCTCGCTATCAGCGCCCGTCATGCCTACCCAGAGTTCCCAGCACAACGTGGTAGAGGACCTAGTTGCGCGCTTCAATGAGgTCAGTTCGTGGGTAACCTGGCTTATCCTGACTGCTGGCTCAatggaggagaagagagaagtCTTTTCATACCTTGTTCATGTAGCCAAATGCTGCTGGAATATGGGCAACTACAATGCCGTGATGGAGTTCTTGGCAGGTCTTAGATCTCGCAAAGTTTTGAAGATGTGGCAGTTCATGGACCAAGCAGACATCGAGACCATGCGAGGCCTGAAGGACGCCATGGCCCAGCACGAATCCTCGTCAGAATACAAGAAGGTGGTGAATCGCGCCCTCAACATCCCCGGCTGTAAAGTAGTGCCCTTTTGTGGAGTGTTCCTCAAGGAGCTTAGCGAGGCTCTCGACGGAGCGGCGAGCTTGATTGGGCTGCGTCCTGCTTTCGATTCTCAAGAGGACTCAATCGAGTTTGTGTCTGATTACAACGGGCAGCAGCATTTCCTGCAGAGAGCGGGAGCTGATGGGCTGCACAGCTCGGAGAAGGAGGCCACCGTCAGCAACATCCTGCAGACCATCCGCAGCTGCAATCGCAGCCTGGAGGCCGACGAGCCAGAGGACGCCTTCAGAGACAGGAGCAAGAACCAGAGAGGCTCTGAGTCAGGCCGTGTCCTATTTCTAGTAGGAGACCTTTCTGATTCAGAAGGGGATTTGACCGAGCAGCCGCGAGAGTCGGACCTGCAGAGCCCAGAGGAACCTGAAGGCGCTTTCAGTCATGGGACCGAGGTGGTGCCCTGGTACGTACTCTCACTATCTGCTGATATGCATCGCTTCCTGCTGCAGGGTGCCACCGTCATCCACTACGAGCAGGAGAGCCACTTCACAGCCCGCTGCCTGCTGCGCCTGCAGCCTGACAACTCCACCCTGACATGGATCAAACCCCCGAGCAGCCGGAGCAGGGGCATCGTACCAGACTCTCTCCTTCAGGGCCAGGCGGTTGTGTGTGGCCTCACTGAGGGAGTCCTCGACCTGAGTGCCGTCAAGGCTGTGTTTATGGGCCATCCGGGGATCGATATCAATGTAGTGCGCATACAGCATAAGCTATGTGGTCTAAGTGCTGAGGAGAATGGAGTCACACTGCTCTACGGGCTGCACACCACCGACAACAGGCTGCTGCACTTCGTGGCACCGCGACACACAGCATCCGTGCTGTACGAGGGCCTGCGGGAGCTGATTAGTGCCATCAGGAAGATGAAGAGGTTCCCGGACCAGAGGTTGCAGTGGCTACGTAGGCAGTACGTCAGCCTCTACCAGGAGGATGGTAAATTTGAAGGACCGACGCTGGCTCAGGCCATCGAGCTGTTCGGGGGTCGGCGCTGGAACATGGGCTCAGCCAGTAGAAGCACGGAGAAGACCACCGCTCAGAAGAACAGCCCACTGGGCATCAGCTCCAAtgccaagaagaagaaaaaagcccTCGTGAGGGGGGACAGTGGGGATGGAACTGATGATGAGATGATCTCACGCAAGACAAAAAGCTGCAAGGAAGCCCTGAGCAGGAGGTCTTCAGATCCATTAGACAGCGTGGAGCAGGAGGAGAATGACGACTCCAGCCCCTTTGGAAACCCTggattctccttctcatctAGCACCAAAACCCAGTCCCCTGGAACTTCTTCCTTCTCCTCCCCCTCGTGCTCATCTTCTGTAAACAGCTCTACCCCCACCCGGCCGCACTCCTCCCCCGTCCTCCCCTGCACCTCCAAAAGCCAACCGGGGGCATGGAGCAGCAGAAGTTGGCACGGGCGGGGAAAAGGCTGCTTCCGTGGTTTCCAGAACCTCATGATCTCAGACAGCATCATGAGCTTCGTCGAGTTTGTGGAGCTCTTCAAGTCATTCAGTATTCGTAGTCGGAAGGATATAAAGGAACTGTTTGACACGTATGCTGTGCCCTGCACTCGCTCAGGCCCGGATTCAGTGCCTCTTTACACCACACTGAGAATCGACGACAAAATAACAGGGCTTCAGCCCGACCTAGACCTGCTGACCCGCAACGGCTCTGACCTCGGCCTGTTCATCCGCACCCGCCAGCAGATGTCAGAGAACCAGAAGCAGATTTCAGACGCCATTGCCGCTGCTAGCATCGTGACCAACGGCACAGGCGTTGAACACTCTTCACTGGGTGTGCTGGGCCTCGCCATCCCGCAGCTCAATGACTTCCTGGTCAACTGCCAGCGAGAACACCTGACCTACGATGAGATCCTGACCATCATCCAGAAATTCGAGCCTTCTTCGAGCATGCGCCAGATGGGCTGGATGTCCTTTGAGGGCTTTGCCAGGTTCCTCATGGACAAGGACAACTTTGCCTCCAAAAACGAAGAGTCTCAAGTGAACTCGGATGAGCTGCAGTACCCGCTTTCATACTACTACATAGAATCATCACACAACACGTACCTCACCGGCCACCAGCTGAAAGGAGAGTCCTCGGTGGAGCTGTACAGTCAGGTGCTGCTGCAGGGATGCAGGAGTGTCGAGCTAGACTGCTGGGATGGCGACGATGGCATGCCGGTTATTTACCATGGGCACACTCTAACCACCAAAATCCCCTTCAAGGATGTGGTGGAAGCCATCAATCGCTCTGCGTTCGTGAACTCCGAGATGCCCGTCATCCTGTCcattgagaaccactgctctcTGCTTCAGCAGCGCAAAATGGCCGAGATCTTCAAGGTGGTGTTCGGAGACAAGCTGGTAACCAAGTTTCTCTTTGAGAGCGATTTCTCTGATGACCCACTGCTCCCCTCACCTTGGCAGCTCAGGGGCAAGATCTTACTCAAGAACAAGAAACTAAAGGCACATCAGGCCCCTGTGGATATCCTAAAGCAAAAGGCACTTCAGCTAGCACACATGCAAGCGCAAGCCAATAACTGCACAGTCGCCGCTGGTTCTCTTGGCAACAacgaagaggaagaggaggaggaagacgaGTATGACTACGACTATGAGTCACTGTCTGATGCTGATGTCCTCAATGCTTCCACTGCCTCTTATAGCCAGGAAGATAACATCCTGGATGACAAGCCGGAGGGGAAGTCGTCGACCGAAAAGCTGCAGTACGAGTCCAACGACGAGATGCCAAAGAGGATTAAGAAAGCAGGGAGTAAGGGAAAGATGTTTGACATGGAGCTGGGGGAGGAGTTCTATCTGCCACAGAACGAGAAAGAAAGCAGGCAGAttgcacaggagctctcagacCTTGTCATCTACTGCCAAGCAATCAAATTCCCAGGCCTCTCCACCCTCTCCCCATCAGGCTCTAGCAGAGGAAAGGAGCGCAAAAGTCGAAAATCCATCTTTGGCAACGCCCCAGTCCGTGGGAGCCCTGGTGAGCCGGTGACGCTGGTGCGCGGCTCAGGGAAAGCTGGTATGGATGGCACAAGGGCAAGCTGGGAGGAGCAGACGATGCCAGCGCCAGGCACGACGCCTTCGTTGAGCGCCATCATCCGCACACCCAAGTGTTATCATATCTCATCGGTGAATGAGAACGCTGCCAAGCGTCTGTGTCGTCGTTACTCTGCCAAACTGATTGGGCACACGGAGCGCCAGCTGCTGCGCACCTACCCTGCTGCCACCCGCATCGATTCTGCCAACCCCAACCCCCTCTGCTTCTGGCTGCATGGCATCCAACTCGTCGCCCTCAACTACCAGACCGACGATCTGCCCATGCAGCTGAATGCTGCTCTGTTCGAGGTGAATGGTCACTGCGGCTTTGTCCTGAAGCCACCTGTGCTATGGGATCGTACCTGCTATCTGTACCAGCAGTTCGGCCCACTGGAGCGAGACCTGGAGCACATGAGCCCTACTTTCTACTCTCTTActGTGGTATCTGGGCAGAACGTGTGCCCGGGGAACAGCAATGGCAGCCCGTGTGTGGAGGTGGAGGTACTTGGCCTGCCAGCTGACGCTTGCCATTTCCGCACTAAGCCCATCCATCGCAACACACTCAACCCCATGTGGAGCGAGAGCTTCTCCTTCCAGGTGCACTTCGAAGACCTGGCATTCCTACGCCTGGCTGTAGTGGAGAATAACAGCTCACAGGTCACGGCGCAGAGGATCCTGCCGCTGAAGGCGCTCAAACCTGGGTACAGACACCTGCAGCTGAGGAATCAGCACAATGAGGCACTGGAGGTCTCCACCCTCTTCCTGTTCAGCCGCAGGACAGAGGAGAGTCCTGATGGTGGAGCACGACCTGCCGCTGTGTTGTTTAGCTCGGAGGAGAGGCGAGTGGCGCAGCAGCACAAGGTGACTGTGCACGGAGCTCCAGGACCTGAACCTTTTACTGTGATCAGCGTGAAAGAACACACCACAGCGAAGCAGTTACTTAACAtgCTGGTTCCAGATGCCTCTGCTGACTACTTCCTGATGGAAGAGAAGATACCACTCTCAAAGGAAAAGTGTGATGCGAAGAAAGTTCCTCAACAGCGCCCTCTAGCGTCCGACGAGAGGGTTCTCAAAGTGCTGCACAGCTGGCAGCCTGAGGACGGCTACATGGGCCGCATATGCCTTAAAGCCAAGGAGGAGAATCTGAATGAGAAGAACGGAGTGATGGAGCGAGTGGAGGAAGTTAACAGTGGAGGAGAGGACGACGTGTTCTTTGTTCAGGTTCATGATGTTTCTCCAGAGCAGCCTCGCACGGTTATTAAAGCTCCACGCTACAGCACTGCACAGGACATCATTCAGCAGGCACTAAGCAAAGCCAAGTACTCGGTCAGCATCCTGAGCAACCCGAACGCCAGCGATTACGTGCTGATGGAGGAGGTGGGCCGCGAAGCACCTGGGAAGAAGGTGTCTTCAGCTAAACCCACTCAACGTGTGCTGCCCgatcatgagtgtgtgttccaggcCCAGAGCAAGTGGAAGGGCCCTGGCAAGTTCATCCTCAAACTCAAGGAGCAGATTGCGCGTGAGGATAAGAGGAAGTGCGTGTCGTTTGCCAGTGAGCTTTGGAAGCTGACGGGCCGCAGTCGCAGCGTGACGATGAACGGGCCCGGCTCGAGCGAGGCAGCACACAGTAAGGAGGAGCGCGGCGCTCCGCCTCCACCCGACGCCTTGGACTGAACGCACGCCTgccgatgtgtgtgtgtttgtgtgtgcagtgcatgGAGTCCTGGCCAGGCTCTGCGTTGGCGCTGGGACTGAAGGCCTGGGTGGCAGAGGCATGTCTGGGTTTTGCCCCTCTGGCACCGCCGGCCCCCTCCGCCTGGTCCTTCCCCCTGCTGTGGAACTGGAAGCTGCACAAATGAGCGTCGAGCCGCAGCTCTCTGACCTTTAATCAACACGATGACCTCTCACACACTAAGTGAAGAGCATCATGGGACAGGTAGCGGTACCCTGTTTGCGGTTAGCTCCAGGCTGTGGAGCGTCAGAGTGTAAGACACGGAGCCCACAGTGACTGAGCAGAACATGGAGAGTGTGAGACGCAGCCGGCAGCAGGGTCAACACTGGTTCTGGGATGTGTGATGATTGATTAAAGCTCACTTCCTTCAGGTCACTTCTGTCTCCATCTTTGCTTTTTCTTGGCTGTTTTAATGCTAGAAGCGAGCAAGTGGTCACCGGAGTAGCTCACTCCTTTACCTTGAAGTTCTGTCTTTTGCAGTACTGTCCTCAAGAACCGCATATTAACGTACTGCATGatgttattttgcacatttttaattatagtACAGTTGGTTTTGGTCACCACCtattcttatttaattaaaagcattttgtatttatttgactttttgGAAATGGACTTCCTGTAGTTGAACAGGCAGAAAAGTAGCGCACTCTGGCGGAACACTAACACCACGTGTAGTTCCTTTACAAGGAAGCTTTTGTTAACGATGTGTagactgtaatttatttattgtttaagtAGCTGCTCCTGTTTAAATTGGTTTAAGAAGTAAATGTGCCCTCATTTGGAAGGTACAATTTTCCtacatctgtttattttaaagaccAACAGAAAAGCACTACAGCTTTCTACTTCACTCTTTGTATttagtgcaattttttttttgcttgtttattttgctCATTAATGATCATGTAAGAAATCTTAAACTTGACATTTAATTTTACAGCACGAGTAAGTACACctgttttactgtaaattttattattattatattgtgagTATTTGAGACTCTAAATGGATTTGCTTGTGGGATCAGTTGGGGAAAATGACACAATTTCCTTAAGGGTTTCCCCACTACATTTTCCTGACAATGTTTGTAAACCATTTTGCATGTTGCACAAGCGTGTCCTTTGCACTTCAGTCCTTGTTTAAGTGTGCTTTCCACACCGTTTAATTAAGTTCTGAATTTGTCCCTGACTACCTCTGCTAACTCGTGGAGCCCTGAAGTggaacacttttctgttctcTACTCTAGCAATGTCCTTAACCGGAGTGCTTATTAAATCTAAAGTGGACCTGTTCTGCATGAAGGTTGGAAACTTTTGCATTTTGCcagttctttttatttctcttccatctttctttcttgtgtCTTTATCctcattactgtttttttatttatttaaaagcataGCCCAGGTCGGCCGTGTGTTTCTTCACTTGTACATATCTTGAATATACAATACAACTATTAAAGCCACGTGTCTAATTTATTGGAGGGTGTAAATATTGCCCAAATAGCTCTTGGTGTATCAGTGTATATTGTTTATACTTTTGTAATTTAGAATTTAAAGTATTCAGTgatgtttggtatttggagacactaattatatatatatatatatat

Function

GO:

id name namespace
GO:0032836 glomerular basement membrane development biological_process
GO:0006629 lipid metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226989 lncRNA upstream 59592 6268524 ~ 6270885 (+) True G191719
TU226978 lncRNA upstream 113383 6215273 ~ 6217094 (+) True G191711
TU226826 lncRNA upstream 275272 6001068 ~ 6055205 (+) True G191595
TU226822 lncRNA upstream 381891 5946225 ~ 5948586 (+) True G191591
TU226819 lncRNA upstream 389630 5940621 ~ 5940847 (+) True G191588
TU227164 lncRNA downstream 44002 6460811 ~ 6461014 (+) True G191866
TU227167 lncRNA downstream 46580 6463389 ~ 6473466 (+) True G191868
TU227354 lncRNA downstream 279923 6696732 ~ 6696970 (+) True G192029
TU227359 lncRNA downstream 309176 6725985 ~ 6728391 (+) True LOC113527389
TU227373 lncRNA downstream 361355 6778164 ~ 6785596 (+) True G192043
XM_026914638.2 mRNA upstream 10371 6310905 ~ 6320106 (+) True slc35g1
XM_026914566.2 mRNA upstream 20091 6302378 ~ 6310386 (+) True lgi1b
XM_026915427.2 mRNA upstream 46562 6273566 ~ 6283915 (+) True pde6c
XM_026915428.2 mRNA upstream 62243 6261670 ~ 6268234 (+) True cep55l
XM_026915208.2 mRNA downstream 109424 6526233 ~ 6546253 (+) True ace
XM_026914756.2 mRNA downstream 201842 6618651 ~ 6622647 (+) True dlx3b
XM_026915161.2 mRNA downstream 308518 6725327 ~ 6728144 (+) False LOC113527389
XM_026915160.2 mRNA downstream 308518 6725327 ~ 6726818 (+) False LOC113527389
XM_026915158.2 mRNA downstream 322944 6739753 ~ 6745801 (+) True ptges3l
trnas-gcu_4 other upstream 100174 6230222 ~ 6230303 (+) True trnas-gcu_4
trnas-gcu_3 other upstream 105292 6225104 ~ 6225185 (+) True trnas-gcu_3
trnal-aag_3 other upstream 106371 6224025 ~ 6224106 (+) True trnal-aag_3
trnas-gcu_2 other upstream 106860 6223536 ~ 6223617 (+) True trnas-gcu_2
trnal-uag other upstream 107679 6222717 ~ 6222798 (+) True trnal-uag
TU227356 other downstream 308512 6725321 ~ 6728391 (+) False LOC113527389
trnap-cgg_4 other downstream 354498 6771307 ~ 6771378 (+) True trnap-cgg_4
trnap-ugg_14 other downstream 355632 6772441 ~ 6772512 (+) True trnap-ugg_14
trnal-uag_1 other downstream 356794 6773603 ~ 6773674 (+) True trnal-uag_1
trnap-ugg_15 other downstream 357947 6774756 ~ 6774827 (+) True trnap-ugg_15

Expression Profile