RNA id: XM_034309229.1


Basic Information

Item Value
RNA id XM_034309229.1
length 4809
RNA type mRNA
GC content 0.51
exon number 16
gene id grid1b
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 339066 ~ 620756 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGCTGTTTGTTAACCGTTCACGTTGATAAACTCGGACCACACTCTCTTGTTGTGCTTTTGTTACAGTAGATTAACAGCATGTTTGGATTTATAATTACAGCAGAGTGTCGTGTGAGCTGATGACACAGGGTATCCTGGCACTGGTGACCTCAACCGGATGCGCCTCAGCGAGCGCCCTGCAGTCCCTCACCGACGCCATGCACATCCCGCACCTGTACATACAGCGAAGCGACGACGGCTCACCTCGCACCGCCTGCCCACTGAAGCCGAGCGCTGACGGAGGACGCTACACGCTGGCCGCCCGGCCTCCCGTGCGCCTCAGCGACGTCATGCTCGCGCTCATCGATGAGCTCCGCTGGCGCAAGTTCCTCGTCTTCTATGACAGTGATTACGATATCCGCGGACTGCAGGGTTTTTTGGACCAGACGGCGAGGCAGGGTCTGGACGTGGCTCTGCAGAGGGTGGACAGGAACATCAGCAGCGTCTTCTCCAATCTGTTCAGCAGCATGCGCACAGAGGAGCTGAACCGCTACAGGGACACGCTGAGACGAGCCATTCTGCTGCTGAGTCCTCGCGGAGCGCAGGTCTTCATCCATCAGgccgTGGAAACCAACCTGGCCTCCAAAGACAGTCACTGGGTGTTTGTGAACGAGgagATCAGCGACACGGAGATCATGGAACTGACCCACAGCGCTTTGGGAAGGATGACGGTCATCCGGCAGATTTTTCCGCTGTGGAGAGACAGTAGTGTGAACTGTATGAGGAACAGCCATCGCATCTCCTCTCTGCTCTGCGACCCTCAGGAGGGATACCTGCAGTCGCTAGAGgtGTCCAACTTGTACCTGTATGACAGCGTGTTGATGCTAGCTAACGCCTTCTACAGGAAGTTAGAGGACAGGAAGTGGCACAGCATGGCCAGCCTGAACTGCATACGGAAGTCAACCAAGCCCTGGAATGGAGGCTGGTCCATGCTGGAGACCATCCAGAAGGGTCGCATCACCGGCCTCACTGGAGTTATGGACTTCATGGACAACGGCTCCAACTCACACGTTCAGTTTGAGATTTTAGGCACCAGCTTCAGTGAGACCTTCGGAAAAGACATAAAATggTTAGCCACCTGGGACTCGGTACACGGCCTCAACGGGAGCTTGAAGGAGAGTCGGATTGAGAACGGCATGCAAGGGGTTACAGTAAAAGTTGTCACACTGCTGGAGGACCCATTTGTCATGGTAGCAGAAAACATTCTCGGGCAGCCCAAAAGGTACAAAGGGTTCTCCATCGACGTTCTCGACGCCTTGGCAAAGATCCTCGGCTTCAAATATGACATCTACCAGGTAGCAGACAGCAAGTATGGCTCTCAGCTTCCCAACGGTTCCTGGAACGGCATGATTGGGGAACTTATTAACAAGAGGGCCGATGTAGCCGTGTCAGCCATCACCATCACACCCGAGCGAGAGAACGTAGTGGACTTCAGCAAACGCTACATGGATTACTCGGTGGGGATCCTGATGCGCAAACCGGAGGAGAAGATCAACATCTTCTCCTTGTTTGCTCCGTTTGACCTCGCTGTGTGGGCCTGCATCGCAGCAGCCATCCCTGTGGTCGGAGTCCTGATCTTCCTGTTGAACCGCATGCAGTCGCTGCGCTGCCAGAATCCTTCAGGAGCTCCGTCCACCATGTCCAACTCCTTACACAGCGCTGTGTGGCTCGTTTACGGCGCCTTCGTACACCAAGGTGGAGACTCGGCGATGAGCTCAGTGGCTTTGCGGATCGTGATGGGAAGCTGGTGGCTCTTCACCCTAATCGTGTGCTCATCGTACACAGCTAACCTGGCAGCATACCTCACAGTGTCGCGCATGGACAACACCATACGGACGTTTCAGGACCTGGCGAGACAGGTTGACTTGGATTACGGTACGGTGCGGGACTCGGCGGTGTATGACTACTTCAGAGCCAAGGGCACGAACCCACTGGAGCAGGACAGCACTTACGCTGAGCTGTGGAGGACCATCAGCAAAAACAACGGCCAGGAATCCTCGGTGTCCAGTCCGTCAGAAGGCATCCGCAAGGCGAAGAAAGGCCCTTACGCGTTCCTCTGGGACATGGCAGTGGTGGAATACGCAGCGCTGACGGACAACGACTGCACCGTCACCGTCTCGGGCAATAGCATGAGCAGTAAGGGTTACGGCATCGCTCTGCAGCACGGCAGCCCTTACAGAGACCTCTTCTCCCAGAAGATCCTGGAGCTGCAGGAGAAGGGAGACCTGGACGTGTTGAAGCAGAAGTGGTGGCCTCGTTCGGGTCGCTGTGACCCGGGCAGCCAGCGGGGGGCGCCGGCCGACGGCCGCTCGTTGAAACTGCACAGCTTCGCCGGCGTCTTCTGCGTGCTGGCCGCCGGGCTCGTGCTGGCCTGCCTGGTGGCCGCCCTCGAGACGttctggagcagcagcagcagccactGCCGGCGAGAGCAGCCCAAAGAGGTTACTAAGGATTACAGAGTGAGAAGGGTTTCAGATCCATTGAGATATAATGATATTGCTACTGCTTCATCGGAGGGGAGCAAGGACAtttggacagacagagagagagactgggatGAAACAGAGGCTATTGACACAGGACAAGGAGGTGAACCTGGAGCAGGTGCATCGGCGCATGAACAGTCTCATAGACGAGGACATGGCACACAAGCAGATCCCCGGGCCGTCTATCGAGATCTCTGCCCTGGACATCGGTGGCATGCAGCCGGGCCAGGCGGCACGGGAAGCTGGCCGGGATTTCGCGGGCACGGCTCTATCCGTGAGCACCTTCCTGCCAGAGCAGGCCCATGGAGTGGGCAGGACACTGGCACCAGGGCCTGGCACTGCACTCCCCCTGCCCCTGGGCAGCTCCACCATGCCCTCCTCCATCCAGTGCAAACACAGGGCCCCCAACGGGGGTCTCTTCCGGCAGAGCCCCGGCAAGACGCCCATGCCAATGCCCTACCCCCCGGTGCCAGGAGGACCCATCCCCGAAGCCATTGAATCCACCCATAGCACGTCCATCTGAGCAGCTCTCTTGTGGGAAGAGGCGGGCCGTGGCAGTGCGATCGGGGTTGTAATgtataaaaagaacaaagaaaaaaaaaaacacacacgtgAGGGTGGAGAAGATTTTTAATatagatacaaaaaaaaacaacaaaaaagatcttttcttgtaaatatttgtaaataacaaAAGAGCGAAGTGAGTTAAAGTGTATTTTGAATATTCTCAATTTTTGGAGTTGagttacaaaaacaaaacgaaaacaaacaaaaaaaaagaaactataaaacggactttaaaaatgactgtttaAATGGCTTTGTAAATTTTGTTCTCTATGGATAAAGACGCAAATTCATTGTGATTGTTTTCTAAGTGCCGAAATAAAAAAGATGTCTCTCCACAGTTTGTTACTAGATTAtcacacatttcagttcattaCGAGTCACAATGAAGATTAATGAATCAATTTCGCACCCCCTTTTTTAACGTTTGTTTACAATCACAGTCATTCTTTAGGCTCTAAGAGCACCGTCTCTGTTTGGATGTTCAgctgttttcatttttgctcTTTAACGAGTTTGATTAGCGATGGCGTAAGCGTCAGCGTCGAGTCTGAGAGCCGTGTTCAGCGTGAGGTCTAGCGAGGCTGGAAGGCCTTGAGCACAAGTTTCCTAAAGGAGAAAGCTAAGAAAAATCTCTCATTTGTtattggatctttttttttttttttttcagcaatgtATGGCTGCTTGATCAATGCAAATTGTGTGACAATAGTgctaacttttatttttcatatttgtgtGATGATATAACATATGTAACATACAGAGATATTTTCCTTCAGAGTAAACTGCAAAGAGATGAAACGGTTTTATCATTCACAAACTCTGTAAAGacaaatctaaaatataaaaggtATGAAACAATACATGCtgtgatatatattttcttttcttttttttttactggaaatGAGCGTACAGTCCTGCAAGCAGAAAATCTGATTGTGTCATgatgaagtatttttttatgaggacgattgtgtgtgtgttcagcaggtCCTGTCCCCGGATGATTAGCACTGTCTCTGCATCACAATACGATTTTCCCCAGAGATATGAATCGTGTAACTGCACTTATAGTCCTTGTCTTTTCTATTACTGTGtaattgtttttgctttgtttccACCTCAGCCTGAGGATCAGTCTGTGTTTCCTTTAAGCGCGCTTTCTCCATGCTCCATATTTAATATCGGTGATCGGTGGCGGTGGAGGACAGGCTGTAGATATGTGTGCTGTTATCCCTAAAGACTCGACTGACTTTCTCACATTCCGGAGTCCGATAAGGACATTCCTGCTTTCGAGTGGAGGGGACGTCCTGGCATCAGCGCTGCACACGATCAGTCAGTAATCACGGTCGTAGCCTGAGTATCTTGTGTACGTTCAAGTAGTTTCCAATGTTAACCAAAGCGACATCATATTACACTGTGTTCCACCCCGAAACGCCGCTCGCTGGCGGAGACGACGATGTGCGACCTTCTCGTAGGGACGGCCGCGTGCTCACTGCTTTTACTGCCCTGACTCCCTCACGCTACTGCAGGAAAAAACCAGATGATGTttgatttaaagctgaaaagaaaggaagaagtcTATCACAGTGCAGATCACAGTGCAGTCTGGAACATTACACCAGAGGGAGACTCTTATTTTGTTTATGAATATGCTGCTTGGAGTTTcttaattctttaataaagaaatatggtTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403575.2 lncRNA downstream 199332 135208 ~ 139734 (-) True LOC113535197
TU223636 lncRNA upstream 9287 545624 ~ 773583 (-) True G188923
TU223672 lncRNA upstream 100178 636515 ~ 636889 (-) False LOC117598518
TU223648 lncRNA upstream 155262 691599 ~ 784981 (-) True G188929
TU223693 lncRNA upstream 212401 748738 ~ 834576 (-) False c12h10orf88
TU223634 lncRNA upstream 234116 770453 ~ 772015 (-) True G188922
XM_034309344.1 mRNA upstream 96666 633003 ~ 636382 (-) True LOC117598555
XM_034309263.1 mRNA upstream 100160 636497 ~ 638042 (-) True LOC117598518
XM_034309226.1 mRNA upstream 156611 692948 ~ 718933 (-) True waplb
XM_034309261.1 mRNA upstream 291860 828197 ~ 834760 (-) True c12h10orf88
XM_034309345.1 mRNA upstream 331700 868037 ~ 879127 (-) True vps35l
TU223922 other upstream 1028553 1564890 ~ 1565260 (-) True G189180
TU223956 other upstream 1031949 1568286 ~ 1571073 (-) True G189199
XR_003404831.2 other upstream 1658650 2194987 ~ 2210979 (-) False LOC113547489
TU224780 other upstream 2256709 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other upstream 2263739 2800076 ~ 2805906 (-) False LOC113547504

Expression Profile