RNA id: XM_034309232.1


Basic Information

Item Value
RNA id XM_034309232.1
length 3106
RNA type mRNA
GC content 0.51
exon number 12
gene id dbf4b
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 998787 ~ 1009835 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTCAAATAGAATCAttaacactcttttttttttttttacattaacgTGTAAATCTGTTTAACATTTCATTCCTGAAACATCGTCCTTTTCCACGAGTCGTCTGTTACAGGTCACCCCTATTAAATATTTGGAACATTCCATAagttacagcagcagttcatcAGGACattgcatcatctgaatttcctgaagatcacgggaagaagaaaagcaaagGTGAAGCGGTGTAATGCAGCGTGTGTTAGCAGTGTGTGAGCCGCTGGGCGCGCTCGTGTCTGGGCCCCGCCCACTGGAGGGGAAGTCGTTTTACCTGGATGAGGTGAAGAGTCACTCGTGCGGCGTCCTCACCAAACTCATCATCCGCCTCGGAGGGAAAGTGGAGAGTTTCCTCTATAAGGACGTGAACGTCGTCATCACGGGAAACAGGGACGCCCTGACCGACATCACGGCCCCATCGggaaaggtcaaaggtcacgaTTCTCCTCGTGAGCAGAGAGCGAGCGGGACCGCCGCGGCTCAGCGGCCAGGAACCCCGAGAGCAGCGGTGTGCGGCAGCCGAGGAAAAGCCTTGCTGGAGAAAGCCATCCGCAATAACGAGCAGGCTCGGGGTGGTGTGTTGTCCAGCGCCGCTCGCTACTGGGGCGTGAAGATCGTGTCTGTAGACCAGTTTATGAAGGTTGTAGAGGAGCTGAGCTCACACCGCTCCGCTCACACACACCGCAGGAGAGAGgAGAAGAATTCGAGTGAATGTTCAAGTGTGCGTGTCATCAAAGCTGGCAGTCTGAAGGTGGACTTTGTGAAGGTGGAGGACTCGGGCAGGAAGTACAGGCCTCTGTATGGCCAGTCTCTGCATTTCCCCATGCTGAGCTACACGAGAAGATTCAGTCCTTTTGAGAATCCTGCCCCAGTGCAGCCTGGGAAGACGAAAGAAGACGAGCTCAGTAAAGATAAATTCAGaaaaagtGAAGAGCCGATCAGTAGTCACGATAAACCATCGGCAACTCCTTCCCCTAAAATATCTCACAAGAAGAAGAGCTTGGGCTACTGCGAGTGCTGCCAGATAAAGTACGAAGATCAGGACGAGCACTTGCAGTCGGACGTTCATCGGCGCTTCGTGGAGAACGTTAATAACTACGCCGTGGTGGATCAGTTAGTGGCTTCCATGGATGCCATTTTCTCGGGATGTAAAGATCCGCAGGATGATGCACTGATGAAGAGgtTGTCAAGCTGCTCTGTAGCTCCTTCTTCTGAAATCGTGCAGCAGCGTACAAGTGAAATAGAAACGTGTCGGACAAATCAAGAGACCCTTGCAGAACCCGCAAGCAATGTGGAAGTCCAACAAGAATGTGTTCGTGACCCCCCAGTTCTCCCTCAGGAGCCTCAGGAACCTCCTGTAGATGCTCCTCCTTACACTTCCTTGGACCCCGAGTTTGAGGATGAAAAACTAAACTCGACAGCAAACTCTGAAACCTGTGTTCCCAGTCCTCGCCCTCAGGACGATGTTATTGTGGACAGTAAACATCTAGAGTGCTCTCCGCCTTCTCCAGGAGCGGGGTCAGATGGTCATAAACCCAATACTCCACAGGAGCTTGGAGAAATCTCTCCGAGACCTTCCCATGGCCTAGAAACGTCACTAAACGAGGACAGAGCTTCATCAACTTGTTTAAAAAGTCCCAAGCAGCGTCAAGAAGATCCCGTGAATGATTTACCTTCATGTGCACGGTTAATGGAAAGGGAACAGACTTCCTTTGTAGATGCCACCTCTTGCTCTCCGGCGTTTCATTCCCTGCCATTTCGGTCATTGTCCACCAGAATTTCAGACGGCCTGAACCCCAGGAAGCgcagcagatcctttattcTCAGCCCAAAGACCTCAAAGATGAGGAGGACTAATCTGTGGTCtgatccaaccaatcagaacagtgATATCAACATCAGATTTGATCGCGTACAGCAGAATGTGATTAACGGACGCACGGAGGCTAATGACGTTACTGAACGCAAGCTGGAAACTGCAGAGCAGGATCCTTTACCAAACGTTTCCCTCAGCAACGTGGCAACTCCAGAGGATCGCTTGTCTTTCCGGAACGATCATCAGGATGAACCGGTCTCTCAAACATACCCAAACAACAAAGCTCGTGATGTCTCCTCAGAACTCAGTCCTCCTCAGCTGTACCCTTTCTTCCACGATGACGTCTACCAAAATCACCCGCCATTTCTTGAGCCTCCTAAACTTGCCCCTAGTGCTCCCTTTCCTTCTACAAGTAAGACCTCCAGCGCTTCTCTCCTGTCTCAGTCCTTTTCGTCCGTCTGCATCGAGCCTGCGCTCGTCCCGGACACTTTTTCCGCCGCTTCTTCCGAATCGGATTGGGATTCCGGCCTCCTGTCGCGGTTAGCACCGCCGCTTCACCTCCAGCCCAAAGGGGGGCGCTGTGAGCTGGACTTAGGGCTGCTTCTGCAAAGTTCCTGCGCCGGGATGCAGGACGGAAGCTACACATCGCGACTGTGTTCCGTGTTGCAGCCCACCGCTTCTTCATCGCACGCTGGTTTTGGAGATCCGAATACCGTGTACCGACCGATCGAGACGATGGACAGGCGGATAATTCAGAGTCTGGGAGTGTAGTAGCAGGACCGAGACTGAAGAGGTCTGTCGATTTCATGCTAGCTCAGTTGAAACTTAGAGGCGGAGTGCATTTGGCTAGCGTGGTGTTTTTCCGCTTAGCAGCACAGTGGGGTCAAAGGATGAAGGATGAACACGATCCCGACTTCTCATTCTGGATATAAAAGTGATATCTGAGCTTGTAACATGAGTTGATGCTAATGTAGTAGCAATAACGCAACATTTGTGTTGGTGTGCTTTAAGATCTTTCACATGTAAGATGTAAGATCCGCTTCGCATTAGCTAGCCTCATCACCAAAGTGACTGGACAGGGAGGACCTTCTGTAATGTGTCTCTGCTTTAGCGGCGCACTGAAACCTGTATGATAGAATAAGGGGGGTGTTCTTCAAGAACCCTGCTTTGGGAGAGGACACGGAAACCATTACGCCAAGAGCGCAATAACAATCCAAATCCCAAGCAGTTTTCTGCTAACGAATTTGCAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223448 lncRNA upstream 22922 974797 ~ 975865 (+) True G188761
TU223449 lncRNA upstream 24928 972755 ~ 973859 (+) False LOC113535146
TU223428 lncRNA upstream 74297 924285 ~ 924490 (+) True G188749
TU223426 lncRNA upstream 75982 922605 ~ 922805 (+) True G188747
TU223423 lncRNA upstream 85414 905466 ~ 913373 (+) True G188744
TU223461 lncRNA downstream 36665 1046500 ~ 1050620 (+) True G188770
TU223911 lncRNA downstream 535963 1545798 ~ 1546582 (+) True G189170
TU223926 lncRNA downstream 557681 1567516 ~ 1665337 (+) False LOC117598477
TU223946 lncRNA downstream 599991 1609826 ~ 1612220 (+) True G189190
XR_004579144.1 lncRNA downstream 653262 1663097 ~ 1665813 (+) True LOC117598477
XM_034309257.1 mRNA upstream 1984 976523 ~ 996803 (+) False LOC113535123
XM_026928297.2 mRNA upstream 1984 981015 ~ 996803 (+) False LOC113535123
XM_034309256.1 mRNA upstream 1984 981716 ~ 996803 (+) False LOC113535123
XM_034309255.1 mRNA upstream 1984 983068 ~ 996803 (+) True LOC113535123
XM_026928328.2 mRNA upstream 24569 957532 ~ 974218 (+) False LOC113535146
XM_034309234.1 mRNA downstream 4094 1013929 ~ 1046212 (+) True adam11
XM_034309233.1 mRNA downstream 4094 1013929 ~ 1043678 (+) False adam11
XM_026928248.2 mRNA downstream 45956 1055791 ~ 1065735 (+) True fkbp10b
XM_034309239.1 mRNA downstream 70128 1079963 ~ 1111182 (+) False LOC113535337
XM_034309238.1 mRNA downstream 70577 1080412 ~ 1111182 (+) True LOC113535337
XR_003403557.2 other upstream 778419 137521 ~ 220368 (+) False ccser2b
TU223925 other downstream 653257 1663092 ~ 1665337 (+) False LOC117598477
TU224759 other downstream 1750858 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 1960290 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 1960290 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 2228609 3238444 ~ 3239216 (+) True G190028

Expression Profile