RNA id: XM_034309233.1


Basic Information

Item Value
RNA id XM_034309233.1
length 3697
RNA type mRNA
GC content 0.48
exon number 26
gene id adam11
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1013929 ~ 1046212 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agcgagcgagcgagcgcGTGCGGGCGGTTTTTCACTGCAGAGCCAGCGCGCGCCGTGAGCTCGGTACCGTGTGCGGCTCCGGTGCGGgattttttccctcctctcGCTCGCGCATCAGTTACAATGGCTTAATAAAGCGTCGCGCGCTGCACGTCTCGGTGCTGAGTGTCatctctttattttgttttgttttatttttttccgtTCTACCGGATTTGTCCTTGTTTTCATGCCCGCGCGCAGTATGTGAACGCCATGCGGGCGGCGCGGTGCCTCCTCCTGTGGGCTGCGGTCTCCGTTACAGGCTGGAGCACCGCATCGCGGCAATGgcgagagagaggaggggggaTCGGGATCGGGAACGGAGACGGGCGCGCGCATCGTGAGGAAGAGATCACGCGGCCGCAGCGGCTCCAGCAGCGCGCGGATGGAGAGGGAGGCGAGCTCGCGCACGGTCGCCTGGATACCAGAGTGAAGAGCGAGGACGCCGACGCGCTTCACccgATTCATCTCGCTCAGCTGTCGTTCCTGGTGAAGGCGTTTGAGACGTCATTCATTCTGGACCTGGAGCTCAACCAtgatCTCTTGTCTTCAGACTACGTGGAGAGACATTTCAATGAAGAAAGAATACCATTTCATAATCAGGGAGGAGAGCACTGTTATTATCACGGCACAGTAAGAGGAGCGAAAGGTTCCTGGGTCGCTCTCTCCACCTGCCATGGCCTCTGgGGGATGTTCTCAGATGGCAACTTTTCTTACGGGATTGAACCCTTACCACACGTCGATGagcagGGACAAAACGCTCATGTTGTGTACAGACTGCCTGACCTTCAGCTCAATGCACCACACTGCCCTGaatgcaatgctaCCAGTGACCCGGACTCAGCTGTGGATGATGTCACACCTGTTTCTGCTGAGAGTGATGGGCCCACTTTCACACACGGCCTGAGACGGGTCAAacgccagATCCGGAGGCCACCACGTACTGTTCAGACCGAGACCAAATATATCGAGCTGCTAGTGGTGAATGACTATGACCTgTTTGTGCAGATGCGCAGGTCGACTGCGCAAACACGCAACTTTGCGAAAGCCATCGTCAATATGGCCGACGCAatttataaaGAACAACTCAACACAAGGCTGGTGCTTGTCGCCATGGAGACGTGGTCATCCCAGAACATGGTTTCCGTGGGCGACGACCCTCTGATGACTCTGCGTGACTTTATGAAATACAGGAGGGAGAACATCAAAGAGAAGAGCGATGCTGCACACTTGTTCTCGGGGCGCACGTTTCAGAGCAGTCGCAGCGGAACGGCGTACATCGGGGGTATCTGTTCTGCTACACGCGGCGGAGGAGTCAACGAGTATGGAAACGTGGGTCCCATGGCCATCACGCTGTGTCAGAGTTTAGGACAGAATCTGGGCATGATGTGGAATAAAGACCGCGCCACCGCAGgaGACTGCAGATGTCCGGACCCTTGGCTCGGCTGTATCATGGAGGACACTGGgtacTACCTGCCCAGGAAATTCTCCCGCTGCAGTGTGGAGGAGTACGTACGCTTCCTGCAGGACGGAGGAGGCAGCTGTCTGTTCAACAAACCCACTAAGTTACTGGATCCTCCTGAATGTGGAAACGGATTCGTGGAGCAAGGAGAGGAGTGTGACTGCGGCTCGCAGGTGgagtGCTCTCGAGCAGGAGGAGCATGCTGTAAGAAGTGCACTCTTACCCATGATGCAATGTGTAGTAACGGACTGTGCTGTAACAGATGTAGGtatgaGCAGAGAGGGGTGGTGTGTCGAGACGCTGTAAATGATTGCGATATTCCAGAAATGTGTCCTGGTGATTCCAGTCAGTGTCCTCCTAACGTACATAAACTGGACGGCTACATGTGTGACACAGGACAGGGTCGCTGTTACGGCGGTCGCTGTAAGACCAGAGACGGCCAGTGTCAGGGGCTGTGGGGTCACAactcaGCAGACCGGGTGTGTTACGAGAGGCTGAACACTGAGGGGACGGAGAAAGGAAACTGTGGACGAGACTCCAGTGGACAGGGATGGATCCAGTGCAGCAAACCtgaTGTACTGTGTGGGTTTCTGTTGTGCTCGAATATGACGATGAAGCCTCGTTACGGTGATTTAGATGGAGAAATCACCAGTCTCACCATCTACCATCAAAACAAGTACCTGGACTgccatggaggacatGCCGTGCTGGAGGATGGCTCAGATCTGGGTTACGTGGAGGACGGAACTCCGTGTGGTCCTAACATGATGTGTTTGGAGCGGCGCTGTGTGCCAGTGATGACCTTTAACCTGTCAGTGTGTCCCGGTTCCTCCACCTCACACATCTGTTCCGATCATGGgacgtGCAGTAACGAGGTGAAGTGTATCTGTGACTCCGACTACACAGGGAAGGACTGCAGTGTGTACGACCCGCTCCCTGATCCACAGCTTCCAGAAGGACCTGAGAAATACAAaggTCCGAGTGGCACAAACATAATCATCGGTTCTTTAGCAGGAGCCATACTGCTGGCAGCTATAGTGCTGGGAGGAACAGGCTGGGGCTTCAAGAATATCCGCAGAGGAAGGTATGACGCTGCTGAACAGGCTATGATgtgacatttattcattcattattttattttattctattttatttaattttagtttagtttacgTGTAGTGGCCTAGGAAGACGCTTCATTCCAGTTAGAAGTTTTAGCTCCATCATTCTCCtcttataaacaaacacatttacacgTAATGACACTATTCTAATAGGAAATCATCTGAAATATATTACGATCTcgttcttatttttttatgatcatCAGCCACGtagttatttttaaacactatCTTTTGAACCGACgtgttttttattgtaatgGCGTGTTTGTAGAGCATCATAATGCAGTAAGTATGCTCCGAGTGTAAGACACACCCCTCTCAATTCTGTCAGCTCACACAAACAGgaggcttttatttttatttttgttgtcgaAAAGAGAAAAGCAGCGGAGAGAAGTCAGGAGAGAGTTATCAGCTGACGTACTGACGCGTTTATATTTGTATCGTGAATTTCCACCACTAAAGAAAGATATTCTGCTCGAGGCTTGGGCTCTTAGatgctctgtgattggatgaagccacacctgctcattaattattcatgaattTTCCCAGTTAAAAAACAAGTAGCACTTTATATTAAGGTTCcactaacattatttaataatttaacagcTTTAATAAACCATAAGTAATGCTCATGAAGTTACAGAGCAAGTTAACACGTGTATTAATTAACAtctatttaaattttaactaaATTCACCTACAAATAATCAacataattttgtaaaaatgaaattacagcATGCTGCTTAAAGTTTAATAATGTACTGAACTcctctttacctctgactgaaaAGTTGCAAAGCACTgcaactggagactccttccataactgtaaACGTAAAAAAGcgttaattaatcaacaccttctgaccaatcagaatccagaattcatcagGATGGTGTTAAATAACATCAGTTAAAGGAACCTTAATGTTTTAAAGTGTTAAgagttctttgtgtgtgtttgtgtttttttttgtactgagtTTTAAATCAGTGAGAGATTTGTGGAAAATAAAGACAAGAGTGATCAGCGAACTGGATTTCTCACATCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223448 lncRNA upstream 38064 974797 ~ 975865 (+) True G188761
TU223449 lncRNA upstream 40070 972755 ~ 973859 (+) False LOC113535146
TU223428 lncRNA upstream 89439 924285 ~ 924490 (+) True G188749
TU223426 lncRNA upstream 91124 922605 ~ 922805 (+) True G188747
TU223423 lncRNA upstream 100556 905466 ~ 913373 (+) True G188744
TU223461 lncRNA downstream 2822 1046500 ~ 1050620 (+) True G188770
TU223911 lncRNA downstream 502120 1545798 ~ 1546582 (+) True G189170
TU223926 lncRNA downstream 523838 1567516 ~ 1665337 (+) False LOC117598477
TU223946 lncRNA downstream 566148 1609826 ~ 1612220 (+) True G189190
XR_004579144.1 lncRNA downstream 619419 1663097 ~ 1665813 (+) True LOC117598477
XM_034309232.1 mRNA upstream 4094 998787 ~ 1009835 (+) False dbf4b
XM_034309231.1 mRNA upstream 4094 999243 ~ 1009835 (+) True dbf4b
XM_026928297.2 mRNA upstream 17126 981015 ~ 996803 (+) False LOC113535123
XM_026928248.2 mRNA downstream 12113 1055791 ~ 1065735 (+) True fkbp10b
XM_034309239.1 mRNA downstream 36285 1079963 ~ 1111182 (+) False LOC113535337
XM_034309238.1 mRNA downstream 36734 1080412 ~ 1111182 (+) True LOC113535337
XM_034309246.1 mRNA downstream 86191 1129869 ~ 1176044 (+) True LOC113536883
XM_034309247.1 mRNA downstream 86191 1129869 ~ 1176044 (+) False LOC113536883
XR_003403557.2 other upstream 793561 137521 ~ 220368 (+) False ccser2b
TU223925 other downstream 619414 1663092 ~ 1665337 (+) False LOC117598477
TU224759 other downstream 1717015 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 1926447 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 1926447 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 2194766 3238444 ~ 3239216 (+) True G190028

Expression Profile