RNA id: XM_034309237.1


Basic Information

Item Value
RNA id XM_034309237.1
length 3283
RNA type mRNA
GC content 0.39
exon number 19
gene id LOC113534962
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1290300 ~ 1340919 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCAGTAAAGTAGTTACCTTTATGATCCGTGATCTGAAAAGTTAAAGTGAAAGTGGAATCGTTCTGCAGTTTTTCTCTTCGCAGACATGGAGACTGCTCTAATGAGGTGCTTTTATGTGTTGCTGTCAGTGGTCATCTGTCACGgGTTCCATCTCCACGGTCCATCTGATCCTCTCATTGTCCAGCTGGGAGGCTCAGTGATGCTGCCCTGCTTTGTAGAAACTCCTCTACCAACGGAAGAACTGGAAGTGGAGTGGAAAAGAACCGACTCTGAAACTCTAGTGCACTTGTGGCAGGAGGGAGAGAGTCGACCAGAGTCTCAGAACCAGCGTTATCATGAAAGAGCTCATTTCTTCACTGAGGAGATCGCTCATGGaaacttctctctcttccttacAAATGTGACCCATGAAGATGCAGGAGTTTATAAGTGTGCTGTTTACACAAACCTGGACTCTGATGAAACTCTGATTGAAATAAAGGAGATTGAGCGATTGATCGTGTCTGGAGGCCACGTCATATCTGCTTATGCCGGTGAAGATGTCACTCTGAATTGCTCTGTAGACTCAAATATCCCACCGGAAAATATAGAAGAGGTGTCATGGAAGAAAATGGATGAAGATATCTTAGTGCTGTTCTATCAGGAGAGTGAGGTCCTGACAGACTCATCCcatgagagatacagagacagagttGAGTTCTTCAGCGCTGAAGAAAGGACCAAAGGAAACTTCTCATTGAGACTGAAGAGTGTTCGAACTGAGGACAAAGGGCTGTATATATGTTTAGCATTTTCTGGGGCATTATCAGACAATACAACTGTGGAAGTGCTGCAGCTGGGTTTTTCCTTTATGCATATTggaatttttgttttatgtgtaCTTGGATTTGTAATTGGATCACTTATCCTAGGCTACCTATCTTttacatcttttaaaaataatgatgACAGCAGAAGAGCCCTAGCTATACAGTGTGCACATGTCCTTTGTCCTAATATTACTATGTCTATTGTCTTCATCCTTTGGGGTTTTACTGAGGGGTTTTTTACTGAAGCAGCAACTTGTTCAGCACTTAATTTTGTTAGGATCCTTTTCCTACTTTGGATTGCTCTCCATCTGAAAACATTTCAAGATTTTCTCCACCAATTAACTAACCGCTTGGCAATTCCACTACAATATGCTGTGATAACTCTTGTTGCTTATTTACCTATTATTGTGGATCTCTGGTATAAAACAGACACTGTAGGGAAAGTGTTGATTGTGGTAGGTCTGCTACTGGGGTTAATTCCGACTCTTCTGTATCTTATCGCTACAGTATGCTGTAGAAGGACTGTACAAACCTACAgaattacagaattacagattacagaaatCATCAATGCTCTCCGAATGCTGGCTATTACATCACTATATAGACTTCATCTCAaaTATTTGACTTTGGCAATATTTCCACTTTTGCCAGTCATTTGGTTTTTTTGTCACGCTGTTCTCAAACGTCTGTttttacTCTGGATATCAGTGATGATGATCCTGGAGGTTGTAAGTGCATCAGGGTCAATCTATTTCCACTATGACTTTGGAAATAATGTGAAAGGACGTGACACATTGACCTGTGTGAATGCTTTCCTCCACATCTTGACTGTGAAGATACTGTTTACAAGTCTATCACCTTTCTCAGAATCTGACTCCAGAAACACTGAGACACAGCGATCTTTATCCCATTTGGTTGTGTTCGTGTTTGGTACAGCGGTGGTTGTTTTTGTGAATGCTGTTGTGTTATTAGTAGAGCTCATCCTAAAATCAAGAAATGGCCAGCGTACAGTGGATCTGCGAGTTATTCTCCTACCAACTGAATGTGTCTTTGCTGTGTGCTGCCTTGCTTTACAACTATCTGCTTTCTGGCAGGAGAACAGAGAaagATTTAGAGAAGACATAAAGAGGCTGCGAGGATTGTGTGGGTGTAAACAGACACCGACGAACTCACCTCCAGAAAATCGTGAACGTGAACTTGAGAATTTAGCTCCTGCATCTCAGCCCTCAGGGTCTTAGCAGcaaaaattCCTCAAACACAAACCCAGAAGATTGCCAAAGTACaaaagtcagtcacctgacttTTTCCCACAGCGCCCACTAGTGACTGTTTTAGTTGATTAGTCTATGCAACACTGAGCATAAAATGATCTGACTTCTGGCTGtgatatacagtcatgggaaaaagaatgtaaaccctccttcaattctgtgttgttttttatttatcagtgcctaaataacaattgtgtggtcctcactaACTTCTGTAAACAAATAACCGCAggttacaaaaaaacaagattgtGCCAGATGTGActaataaaatgcacaaaatgaattaatcatAAAGAAGAACTTTTGAAGTTTGGTGTTCTgtagcactcaggtgtgtgtctacatcatgccacgAAGagaggacatcagccatgacctaaATAGATTGAATACACTGGATACAGAGGTTACTGATCTGggttactgatcggaaggtcaggGATTAAAGCCCCAGAGcagtcaagctgctgctgtatctgagctgtatcatggctgaccctgcgctctgaccccagcttccaaGTACAATCCAAGGGATATgcgaaaaactgcatttcataggctctgtacttgtactctgcacaatgacaataaagttgaatctaatctaatctaatagtGATGCTTGAAAGGTACTATAAGTAAAACAATGTATTTCTATAATTGTGTATAACATTCTGTACAGGAATGCAGgaaaatttaaaagattttgtaTACCTTTAAAACtagacatgagtgtgtgtaataaaagtatttcataaaaaaagaaaaactacaaGTGTATAATGCTGCATTAGTATCAGCAGGACAGCTATctgtattaaatttattttttgttctttttgcatttcaaaagttatgacaGATTGCAGCAAGAGGAAACATGGCATGCTGTGTGTTACAACATTGTGAAATTTTTTACAAgtaaaatgtaacaataaatatgtaaatagatTTGTTTTTGACTCTCTATATGAAGCAAAGCATGGTTACAGAATTGTATTTAGCGTAACAGAGTTAATGTTGCATGTTGCTTGTTTTACTCTGTTAGTGTTGGCACATGTCATGTACTGGTTGTATATTATATTCAGCCATGTGAATGCAGTGCTTCCTGGTTTATTACAATATCAGTGTCACTATAATATAGTGTGTTTGATGTTGGACAACTTAAATTAAACACAGATAAAAATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223461 lncRNA upstream 239680 1046500 ~ 1050620 (+) True G188770
TU223448 lncRNA upstream 314435 974797 ~ 975865 (+) True G188761
TU223449 lncRNA upstream 316441 972755 ~ 973859 (+) False LOC113535146
TU223428 lncRNA upstream 365810 924285 ~ 924490 (+) True G188749
TU223426 lncRNA upstream 367495 922605 ~ 922805 (+) True G188747
TU223911 lncRNA downstream 204879 1545798 ~ 1546582 (+) True G189170
TU223926 lncRNA downstream 226597 1567516 ~ 1665337 (+) False LOC117598477
TU223946 lncRNA downstream 268907 1609826 ~ 1612220 (+) True G189190
XR_004579144.1 lncRNA downstream 322178 1663097 ~ 1665813 (+) True LOC117598477
TU224019 lncRNA downstream 434686 1775605 ~ 1776432 (+) True G189245
XM_034309265.1 mRNA upstream 7670 1237398 ~ 1282630 (+) True LOC117598519
XM_034309266.1 mRNA upstream 7670 1237398 ~ 1282630 (+) False LOC117598519
XM_034309253.1 mRNA upstream 87094 1184093 ~ 1203206 (+) True LOC117598515
XM_034309246.1 mRNA upstream 114256 1129869 ~ 1176044 (+) True LOC113536883
XM_034309347.1 mRNA downstream 3127 1344046 ~ 1352973 (+) True LOC113530124
XM_034309241.1 mRNA downstream 63369 1404288 ~ 1453976 (+) False LOC113535212
XM_034309240.1 mRNA downstream 63384 1404303 ~ 1455520 (+) True LOC113535212
XM_034309243.1 mRNA downstream 63384 1404303 ~ 1453976 (+) False LOC113535212
XM_034309242.1 mRNA downstream 63384 1404303 ~ 1453976 (+) False LOC113535212
XR_003403557.2 other upstream 1069932 137521 ~ 220368 (+) False ccser2b
TU223925 other downstream 322173 1663092 ~ 1665337 (+) False LOC117598477
TU224759 other downstream 1419774 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 1629206 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 1629206 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 1897525 3238444 ~ 3239216 (+) True G190028

Expression Profile