RNA id: XM_034309240.1


Basic Information

Item Value
RNA id XM_034309240.1
length 2894
RNA type mRNA
GC content 0.40
exon number 19
gene id LOC113535212
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1404288 ~ 1455520 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTGTAATGAGTTGCTGTTACCTGCTGCTGTCGGTGGTCATCTGTAACGtgtttttattcactttaggGTTCCATCTCCACGGTCCGTTTGGTCCTCTCATTGTCCAGCTGGGAGGCTCAGTGATGCTGCCCTGCTTTGTAGAACGTCCTCTACCAATGGAAGAACTGAAAGTGGAGTGGAAAAGAAATGACTCTGAAACTCTAGTGCACTTGTGGCAGGACGGAGAGAGTCGACCAGAGTCTCAGAACCAGCGTTATCGTGAAAGAGCTCATTTCTTCACTGAGGAGATCGCCCATGGaaacttctctctcttccttacAAATGTGACCCGTGAAGATGTAGGAGTTTATAAGTGTGCTGTTTACACAAAACTGGACTCTGATGAAACTCTGATTGAGATAAAGGAGACTGAGCGCTTGATCGTGTCTGGAGGCCACGTCATATCTGCTTATGCCGGTGAAGATGTCACTCTGAATTGCTCTGTAGACTCAAATATCCCACTGGAAAATATAGAAGAGGTGTCATGGAAGAAAATGGATGAAGATATCTTAGTGCTGCTTTATCAGGAGAGTGAGGTCCTGACAGACTCATCCcatgagagatacagagacagagtcGAGTTCTTCAGCGCTGAAGAAAGGAACAAAGGAAACTTCTCATTGAGACTGAAGAGTGTTCGAACTGAGGACAAAGGGCTGTATATATGTTTAGCATTCTCTGGGGCATTATCAGATAATACAACTGTGGAAGTGCAGCAGCTGGGTTTTTCCTCTATGCATATTGGAATTTTTGTATTATGTATACTTGGATTTGTAATTGGATCACTTATCCTAGGCTACCTATCTTttacatcttttaaaaataatgaTGACAGCAGAAGAGCCCTAGCTATACAGTGTGCGCATGTCCTTTCTCCTAATATTACTATGTTTATTGTCTTCATCCTTTGGGGTGTTACTGAGGGGATTTTTACTGAAGCAGCAACTTGTTCAGCACTTAATTTTGTTAGGATCTTTTTCCTACTTTGGATTGCTCTCCATCTGAAAACATTTCAAGATTTTCTCCACCAATTAATTAACCGCTTGGCAATTCTACTACAATTTGCTGTGATAACTCTTGTTGCTTATTTACCTGTTGTTGTGGATGTCTGGtataaaacaaacactgtaGGGAAAGCGTTGATTGTGGGAGGTCTGCTACTGGGGTTAATTCTGACTCTTCTGTATGTTATTGCTGCAGTATGCTGTAGAAGAAATCTACAAACCTACAgaattacagaattacagattacagaaatCAACAATTTTCTCCGAATATTTGCTATTGTAATGATATATGGACTTCATCCCAaaAATATCACTGTGGCAGTATTTCCACTTTTGGCATTGATTTGGTTTTTTTGTCATGCTGTCCGCGAACGTCTGTttttactCTGGATATCAGTGATGATGATCCTGGAGGTTGTAAGTGCGTCATGGTCGATTTATTTCCATTATGACTTTGTGAATAATGTGAAAGAACGTGATGCATTGACCTGTGTGACTGCATTCCTTAACACCTTGACCATGATGATACTGTTTACAAGTCTAATGCATTTTTCAGTTACAAAATCTGACTCCAGAAACACTGGGACACAGCGATCTTTATCCCATTTGGTTGTGTTCGTGTTTGGTACAGCGGTGGTTGTTTTTGTGAATGCTGTTGCGTTATTAGTAGAGCTCATCCTAAAATCAAGAAATGGCCAGCGTACAGTGGATCTGCGAGTTATTCTCCTACCAACTGAAAGTGTCTTTGCTGTGTGCTGCCTTGCTTTACAACTGTTTGCTTTCTGGCAGGAGAACAGAGAaagATTTAGAGAAGACATAAACAGGCTGCGAGGATTGTGTGGGTGTAAACAGACTCCGATGAACTCACCTCCAGAAAATCATGAACATGACCTTGAGAATTTAGCTCCTGCTTCTCAGCCCTCAGGGTCTTAGCAGtttggtgttctgtaGCATTCAGGCGTGTGTCTACACCGTGCCAAGAAGagaggacatcagccatgacctgaATAGACTGAATACACTGGATACAGAGGTTACTGATCTGggttactgatcggaaggtAAGGGGTTAAAGCCCCAAGCTGTGCCgctgttgggcacttgagcaaggcccttaaccataTCTGCTCCAGTGgagctgtatcatggctgaccctgtgctctgaccccagcttcctagcaagggATATgcgaaaaactgcatttcatagGCTCTttacttgtactctgcacaatgacaataaagtttagtctaatctaatctaatagtGATGCTTGAAAGGTACTATAAGTAAAACAATGTATTTCTATAATTGTGTATAACATTCTGTACAGGAACGCAGGgaaaattttaaaagattttgtaTACCTTTAAAACtagacatgagtgtgtgtaataaaagtatttcataaaaaaagaaaaactacaaGTGTATAATGCTGCATTAATATCAGCAGGACAGctatctgtattattattattttttgttctttttgcatttcaaaagttatgacaGCTTGCAGCAAGAGGAAACATGGCATGCTGTGTGTTACAacattgtgaaattaaaatgtacaaagtaaatgtaacaataaatctGAAAATAGAGTTGTTTTGACTCTCTGTATGAAGGAAAGCATGGTTACAGAATAGTATTTAGTGTAACAGAGTTAATGTTGCATGTTGCTTTTTTTACTCTGTTAGTGTTGGCACATTTCATGTACTGGTTCTATATTATATTCAGCCATGTGAATGCAGTGCTTCCTGGTTTATTATAATATCAATGTCACTATAATATAGTGTGTTTGATGTTGGATAACTTAAATTAAACACAGATAAAATCCA

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0036094 small molecule binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223461 lncRNA upstream 353683 1046500 ~ 1050620 (+) True G188770
TU223448 lncRNA upstream 428438 974797 ~ 975865 (+) True G188761
TU223449 lncRNA upstream 430444 972755 ~ 973859 (+) False LOC113535146
TU223428 lncRNA upstream 479813 924285 ~ 924490 (+) True G188749
TU223426 lncRNA upstream 481498 922605 ~ 922805 (+) True G188747
TU223911 lncRNA downstream 90278 1545798 ~ 1546582 (+) True G189170
TU223926 lncRNA downstream 111996 1567516 ~ 1665337 (+) False LOC117598477
TU223946 lncRNA downstream 154306 1609826 ~ 1612220 (+) True G189190
XR_004579144.1 lncRNA downstream 207577 1663097 ~ 1665813 (+) True LOC117598477
TU224019 lncRNA downstream 320085 1775605 ~ 1776432 (+) True G189245
XM_034309347.1 mRNA upstream 51330 1344046 ~ 1352973 (+) True LOC113530124
XM_034309235.1 mRNA upstream 63384 1290300 ~ 1340919 (+) True LOC113534962
XM_034309236.1 mRNA upstream 63384 1290300 ~ 1340919 (+) False LOC113534962
XM_034309237.1 mRNA upstream 63384 1290300 ~ 1340919 (+) False LOC113534962
XM_034309266.1 mRNA upstream 121673 1237398 ~ 1282630 (+) False LOC117598519
XM_026928539.2 mRNA downstream 32651 1488171 ~ 1492211 (+) True LOC113535294
XM_034309527.1 mRNA downstream 108525 1564045 ~ 1565763 (+) True LOC117598650
XM_034309349.1 mRNA downstream 123777 1579297 ~ 1602265 (+) True aclyb
XM_026927863.2 mRNA downstream 145021 1600541 ~ 1608897 (+) True klhl11
XM_034309396.1 mRNA downstream 254429 1709949 ~ 1714497 (+) True LOC117598580
XR_003403557.2 other upstream 1183935 137521 ~ 220368 (+) False ccser2b
TU223925 other downstream 207572 1663092 ~ 1665337 (+) False LOC117598477
TU224759 other downstream 1305173 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 1514605 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 1514605 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 1782924 3238444 ~ 3239216 (+) True G190028

Expression Profile