RNA id: XM_034309246.1


Basic Information

Item Value
RNA id XM_034309246.1
length 3578
RNA type mRNA
GC content 0.37
exon number 17
gene id LOC113536883
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1129869 ~ 1176044 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgcagttttttttcttcgcAGACATGGAGACTGCTCTAATGAGGCGCTTTTATCTGTTCCTGTCGGTGGTCATCTGTAACGgGTTCCATCTCCACGGTCCATCTGATCCTCTCATTGTCCAGCTGGGAGGTTCAGTGATGCTGCCCTGCTTTGTAGAAACTCCTCTACCAACGGAAGAACTGGAAGTGGAGTGGAAAAAAACTGACTCCGAAACTCTAGTGCACTTGTGGCAGGATGGAGAGAGTCGACCAGAGTCTCAGAACCAGCGTTATCATGAAAGAGCTCATTTCTTCACTGAGGAGATCTCTCATGGaaacttctctctcttccttacAAATGTGACCCGTGAAGATGTAGGAGTTTATAAGTGTGCTGTTTACACAAAACTGGACTCTGATGAAACTCTGATTGAAATAAAGGAGACTGAGCGCTTGATTGTATCTGGAGGCCACGTCATATCTGCTTATGCTGGTGAAGATGTCACTCTGAATTGCTCTGTAGACTCAAATATCCCACTGGAAAATATAGAAGAGGTGTCATGGAAGAAAATGGATGAAGATATCTTAGTGCTGCTCTATCAAGAGGGTGAGGTCCTGACAGACTCGTCCcatgagagatacagagacagagttGAGTTCTTCAGCGCTGAAGAAAGGAACAAAGGAATCTTCTCAATGAGACTAAGGAATGCCGAACCAGAGGACAAAGGGCTGTATATATGTGAAGTATTCTCTGGGGCATTATCAGCTAACACAACAGTGGAAGTGTTGCTAGGTTTTTCTTCTATGCATATTGGAATTTGTTTTCTCTGTAGTCTTTGTGCATTTGGATCACTTATCCTAAGCTACCCAGCTTTTACATCTATAAAAAATAACGACAACCACAGAAGAGTCAAACCTATACACTGGGTACATGTCCTTTTTCCTAACATTATTATGTCCATTGCCTTCATCCTTTGGGGCATCAATGAGGGGTCTTTACCTGAGGCTGCTACTTGCTTGGCTCTTAATCTTCTAAGAATTCCTTGCCTATTTTTGATTGCTCCATATTTGGAAAAAGTTCCAGagtacttcaaacgatttattaaaatatctgCAATTCCACTGGAATATAGTGTGATAATTGCTGTTGCTTATTCACTTATTATCGCTATGGGCTTTCTTACATTTATTCAATGTTTTTCTGGCCGGATTTTTCGCAAGTGGTACAAGTGTAATCGTAACTTTTTGCGTTGGACATCAGTGATCTTGATCTTCCAGCTCATATATGCATTAGGATCATTCTACACTCATTATGACTTGGTGGATATTGTAAAAGAACGTGAAGCACTTTACTGTGTGATTGCATTTGTCCACATTTTGAGCGTGATGACAGCTTTTGAACATCCAGTTCGTATTTATGAATTTGACACCGGGACAAGATCTTTATCCCATTTGATTGTGTACATGTTTGGTACAGTGGTGGTTGTTTCTGTGAACGCTGTTGCGTTATTAGTAGAACTGATCCTGAAAGCACGAAATGGTCAGCGTACCGTGGATCTGCGAATTATTCTCCTACCAACTGAAAGTGTCTTTGCCCTGTGCTACCTTGCTTTACAACTATCTCCTTTTTGGGAGAAAATTAGAGAaagtacagtgcagtgtgtacGTCAATTGTCCTGCTGTAAACAAACCTCAAGGGACTTACCACCACACAGTCATGAGCAAGAACTCATGAATCTGGCTTCTGCATCTCAGCCGACAGAATCTTTGCAGcaaaaatGCCGAGAAGATTGCCCAGCTGTGTGAGccaaaagataaaaatgatgtTCATGGTGCCATAAATAGGGGTTAATTTTGCACTAGTcaaccagaaataaaaaagaagtcaactagtcatcttttccatagttaaaccAAAATCTTATTCAGGACATGAGTATTTTTAGGCTGTTTTATTAGTGTAGTTAAACGCTGATAAACAGGAAAGAATGCATCGAACCGCATTTCAGTTAACGGTCACACACAAGCTACAAATTAAAGTTCCAGCATCAGTGCATTTctagaaagacaaaaaaacattatatcaaTTAATCAATATGATAATAAACCTGCGTATTATATTACACTGCTTAAGGATGTACCAATTCTTAAAATTCACTCACTGAAAAATTGAAATTTGTTCAGCACAGTAGTTCATGTCCACCTCTTTATACTAGCTCAGTGAGCCACCATGCTTGAATGGAGGATGTGATGTTTATAGCAGTCTCagggattttatttttctgctatGGTCAACTGCATTCTCAGTAGTGTTTGAAAATGAGTCTGGATCAGCCTCTTTGAACTGAAGTGCATCGCAGATATGACTCTAAACTGGCTGAGTGGGATTGGATAGTACCGTGCAACCTGCAGCTCTGAAAGTGCTCTTTCACACAGCCGTGGTCACAACAGGATTCAATCTGCAGATTTTAAATTCCATCTGGAGCATTCAGgaatggaataataataaaagacatGTCCTGTGCACACCTCTACACTTATGTAATACAAAGTAATAAAGTGTTAACATTTCCTTtacatcaaaagaaaaaaaaagacttttcccaGTGTAAACATCCCTAAAGATTACTGTCTGAATCACTGTTTTCTCCACCGTCCACCTAGTCAAAACCCCCACAGCAGCAACTAGTGAGGGCATTAGTTGACTAGTCTGTGCAATGCCTAGAATAAAAAGTTGTAAGATGTGTGACTGAATAAAGTGAATGCACTAAATGTTTGATAACCTATGAGTCAAACAGTGACAAAGACAAAATGAGAGATATTTACCTTTATATGTCAGGAATTTGTTTTTAGAAGATGACTATAATgtgttacattaatatttttcatattttcacttgtgtgttaattaaatgtgaaattCATGTCTTTGTGTTCATCCATGCTGTAGAATAGTTTTTATTATCTAATATTATGACcggattcattcattcattcattcattcattcattcattcatggcCTATTCTGAGATATACTGTGGGTAAAAGATTAGGATTTAAATTCTATCTGGCATTAGAAATACTGTTTTGACATTTGCAAaattcatatatgtatatatgtaatgtgtgtgtgtgtggacatgtgtttgtataaataaaatattttatttgacaaaaaataGCCACATAATTATAATGCTGcattgtttctgtatttttattttattcatttatttgatgttttttgtatctttttgaGAGAATTTTGAGAGTTGACCCATCTTGGAAAAAGAGGCAACATGGCatgtatattaaaacattttgtgacattttttatAAGCAAACTGTGATAAGCAAATATGTAAATAGAGGTGCTTTGTTTCATACAGAAAGTCAAAAGCATGATTGCAGAATTGATATTTAGCATAGTAGTTAGTTTGTTGCATATTTCTTGTTTTACTCTGTTATTTTTTCTCAAATTTCAGGTTCCAGTGCTTCCTGGTTTATTATAATATCAATTTCACTATAACAtgttttctctgagtgtgtttgaTATTGAACAACTTAATTAAACACTGATAAAATCCATTACTA

Function

GO: NA

KEGG:

id description
ko04621 NOD-like receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223461 lncRNA upstream 79249 1046500 ~ 1050620 (+) True G188770
TU223448 lncRNA upstream 154004 974797 ~ 975865 (+) True G188761
TU223449 lncRNA upstream 156010 972755 ~ 973859 (+) False LOC113535146
TU223428 lncRNA upstream 205379 924285 ~ 924490 (+) True G188749
TU223426 lncRNA upstream 207064 922605 ~ 922805 (+) True G188747
TU223911 lncRNA downstream 369754 1545798 ~ 1546582 (+) True G189170
TU223926 lncRNA downstream 391472 1567516 ~ 1665337 (+) False LOC117598477
TU223946 lncRNA downstream 433782 1609826 ~ 1612220 (+) True G189190
XR_004579144.1 lncRNA downstream 487053 1663097 ~ 1665813 (+) True LOC117598477
TU224019 lncRNA downstream 599561 1775605 ~ 1776432 (+) True G189245
XM_034309239.1 mRNA upstream 18687 1079963 ~ 1111182 (+) False LOC113535337
XM_034309238.1 mRNA upstream 18687 1080412 ~ 1111182 (+) True LOC113535337
XM_026928248.2 mRNA upstream 64134 1055791 ~ 1065735 (+) True fkbp10b
XM_034309234.1 mRNA upstream 83657 1013929 ~ 1046212 (+) True adam11
XM_034309233.1 mRNA upstream 86191 1013929 ~ 1043678 (+) False adam11
XM_034309253.1 mRNA downstream 8049 1184093 ~ 1203206 (+) True LOC117598515
XM_034309265.1 mRNA downstream 61354 1237398 ~ 1282630 (+) True LOC117598519
XM_034309266.1 mRNA downstream 61354 1237398 ~ 1282630 (+) False LOC117598519
XM_034309235.1 mRNA downstream 114256 1290300 ~ 1340919 (+) True LOC113534962
XM_034309236.1 mRNA downstream 114256 1290300 ~ 1340919 (+) False LOC113534962
XR_003403557.2 other upstream 909501 137521 ~ 220368 (+) False ccser2b
TU223925 other downstream 487048 1663092 ~ 1665337 (+) False LOC117598477
TU224759 other downstream 1584649 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 1794081 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 1794081 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 2062400 3238444 ~ 3239216 (+) True G190028

Expression Profile