RNA id: XM_034309249.1


Basic Information

Item Value
RNA id XM_034309249.1
length 1604
RNA type mRNA
GC content 0.55
exon number 12
gene id becn1
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 882694 ~ 888949 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaagaaaacaggaagttggTGGCACCATGGAGGGCTCCAAGTCGTCCAGCACCACCATGCAGGTGAGCTTCGTGTGTCAGCGCTGCAACCAGCCGCTCAAACTCGACACCAGCTTCAACGTCCTGGACCGTCTCACCATCCAGGAGCTCATCGCTCCGCTGGTCACCGTGACGCCGAGCAAGCAAGCAGAAAGCGGTGACGCTGACGGTCCGCCTGAGGAGACGTTTGTGGAGAGTAAGCAGGACGGCGTCTCGCGCAAGTACATCCCTCCTGCCAGGATGATGTCCACAGAAAGCGCTAACAGCTTCACGCTAATCGGCGAGGCCTCGGACGGAGGAACCATGGAGAACCTGAGCCGCAGGTTAAAGGTGACGAGCGATCTGTTCGACATCATGTCGGGTCAGAGCGACGTCGATCACCCGCTGTGTGAGGAGTGTACTGACACGCTGCTCGATCACCTGGACACGCAGCTCAACATCACCGAGAACGAGTGTCAGAACTACAAGAAGTGTCTGATTGACAGGAAGTGTCTGGAGCTGCTGTCGCAGCTGCCGGAGGAAGACGAGGACACGTTGCTGAAGGAGCTGCAGCAGCTCAGGCAGGAGGAGGAGACGCTCATCCAGGAGCTGGAGGCCATCGAGCAGCAGCGGGAATCCGTCGCCATGGAGATCACAGAGGCACGACGCCACGCCCAGCAGCTGGACACAGAGGAGCTGCAGTATCAGAAGGAGTACTGTGAGTTTAAACGGCAGCAGCTGGAGCTGGACGATGAACTGAAGAGCGTCGATAATCAGATGCGCTACTGCCAGGCTCAGCTCGACCGCCTGAAGAAAACCAACGTCTTTAACGCCACCTTTCACATCTGGCACAGTGGGCAGTTTGGGACGATAAATAATTTCCGTCTGGGGCGATTACCCAGCGTTCCTGTGGAGTGGAACGAGATTAACGCTGCCTGGGGTCAgactgtgctgctgctgcacgCTCTCGCGAACAAGATGGGCCTGCGCTTCCAGAGaTATCGACTTGTTCCTTACGGAAACCACTCGTACCTGGAGTCCCTTACAGACAAGTCCAAGGAGCTGCCGCTGTACTGCTCGGGAGGACTGCGCTTCTTCTGGGACAACAAGTTTGATCATGCGATGGTGGCGTTCTTAGACTGTGTGCAGCAGTTTAAGGAGGAAGTGGAGAAAGGAGACACGGGATTCTGCCTCCCGTACAGAATGGACGTGGACAAGGGGAAGATCGAGGACACGGGCGGAAGCGGAGGATCCTACTCCATTAAAACACAGTTTAACTCCGAGGAGCAGTGGACCAAAGCGCTCAAGTTTATGCTCACCAACCTGAAATGGGGCCTGGCCTGGGTTTCGTCCCAATTCTACAACcgttaaaagagagagagagagagagagagagagagaaaaccaggCTCGCTAGATCTCTCTGAACGCTGCTGTGGTGAACGTTTCGGTGACATGACGAGAGGTAGCTTAACGAGGACTCTCTCTATCCAAGCTGGCTTTTACTATTTGTTTACTAAACTTGCTTAAATTGTGACACCGTTTTATGGAAACACTTCCTCCAATAAAACTAAAGCACACCAGG

Function

GO:

id name namespace
GO:0006914 autophagy biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223765 lncRNA downstream 2457 879745 ~ 880237 (-) True G189035
TU223693 lncRNA downstream 48118 748738 ~ 834576 (-) False c12h10orf88
TU223735 lncRNA downstream 49879 831820 ~ 832815 (-) True G189010
TU223648 lncRNA downstream 97713 691599 ~ 784981 (-) True G188929
TU223780 lncRNA upstream 36876 925824 ~ 926056 (-) True G189050
TU223808 lncRNA upstream 124969 1013917 ~ 1028653 (-) True G189077
TU223821 lncRNA upstream 151793 1040741 ~ 1041113 (-) True G189090
TU223786 lncRNA upstream 157161 1046109 ~ 1047784 (-) True G189056
TU223797 lncRNA upstream 176222 1065170 ~ 1071217 (-) True G189067
XM_034309345.1 mRNA downstream 3567 868037 ~ 879127 (-) True vps35l
XM_034309261.1 mRNA downstream 47934 828197 ~ 834760 (-) True c12h10orf88
XM_034309226.1 mRNA downstream 163761 692948 ~ 718933 (-) True waplb
XM_034309263.1 mRNA downstream 244652 636497 ~ 638042 (-) True LOC117598518
XM_034309344.1 mRNA downstream 246312 633003 ~ 636382 (-) True LOC117598555
XM_034309268.1 mRNA upstream 37240 926188 ~ 943327 (-) True LOC113535267
XM_034309267.1 mRNA upstream 37244 926192 ~ 943085 (-) False LOC113535267
XM_034309225.1 mRNA upstream 55900 944848 ~ 955841 (-) True LOC113535162
XM_026928249.2 mRNA upstream 176976 1065924 ~ 1073226 (-) True LOC113535098
XM_034309506.1 mRNA upstream 725048 1613996 ~ 1619414 (-) True LOC113535205
TU223922 other upstream 675942 1564890 ~ 1565260 (-) True G189180
TU223956 other upstream 679338 1568286 ~ 1571073 (-) True G189199
XR_003404831.2 other upstream 1306039 2194987 ~ 2210979 (-) False LOC113547489
TU224780 other upstream 1904098 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other upstream 1911128 2800076 ~ 2805906 (-) False LOC113547504

Expression Profile